Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007941

Physical Location & Seq

Genomic Coordinates Forward (+)

17672630 .. 17674694

Gene Structure 2065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g14110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGCCAGAGCCTCATCTTCAATCTTAACATTCCTCCGCCAAAACCCACATGCTCGCCAAAAACCCGACACCCAAATCCGACACCTTTCCGTAGAAACCAAAGATTGTTCTGATCTCACACAAGTTGCCCAACAGATTTGTCATGTTATTAGAACCAAACCCAGATGGGAGAACACTCTGTCCTCCGAGTACCCATCTTCGAATTTCTCTGATCCTCTGTTTATCCGTGAGGTTGTGAAGCAGCAGAGCAATGTCTTCCTATCGGTTCGGTTCTTCTTGTGGTTGGGAACTCGAGAAGGTTTTTCGCCTGACCCCATTTCGTGTAATGCGGTTTTCGGTGCTCTTGTGGAGGGCAATGCCTGCAGTGCAGCCAAGTCTTTTATTAAGCATACGGGTTTTAGCCCCGAGCCGGTTTTGTTGGAGAGTTATGCTCGGTGTCTTTGGGAGGCTGGGAGGGTTAAGGAAGCTAGTAGTGTGTTTAAGAGGTTAAAAGAGGCTGGAGTGTGCCCGGGGATTGGTACTTGGAATGCGGCTTTGTCGGGGTGCATTAAGGCTAGGAGGACGGATATGGTTTGGAAGTTGTACCAAGAAATGATGGAGTATGGTGTTGCAGCTGATGTTGAGACTGTTGAGTGTCTGGTTCGAGGATATTGTGATGATAACGAGGTATTGAAAGGTTATGGACTTCTTAGTCAGGTTCTTGGAGATGGAGTAGTCCCTGGAAAAGCTGTTTTCGATAGGTTGATATCTGAGTTGTGTAAAGAGAAGGAATATGATAAAGTGTCTGAACTCCTCCATGCAATGATAGAGGTGAAATGTGCCCCCGATAATTATACATATCTGGGGGTAATCAATTGGTTGTGCAAGAATGAAAAGCTGGCTGAGGGTTTTCGGATTTTTAATGACCTTAAGGATAGAGGCTATGCTCCTGATTTTGTCATGTACACAACCATGATTCATGGTCTTTGTACCATGGGTTCAATAGGAGAAGCTAGGAAGCTATGGTTTGAGATGATAGATAAGGGATTTTGTCCAAACGAGTACACGTACAATACCATGATTCATGGGTTTAATCAGAGTGGAGAGTTAGAACAGGCCTGGATCTTGTGCAAGGAGATGGGTGGTAAGGGATTTCGTCCACCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

383

Amino Acids

43.07

Weight (kDa)

6.67

Isoelectric Point (pI)

35.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	170 - 219	4e-10	PPR repeat family
PPR_2	PF13041	244 - 289	1.2e-08	PPR repeat family
PPR_2	PF13041	283 - 323	5e-10	PPR repeat family
PPR_1	PF12854	306 - 338	2.9e-08	PPR repeat
PPR_2	PF13041	310 - 357	2.8e-15	PPR repeat family
PPR	PF01535	313 - 343	6.3e-07	PPR repeat
PPR_1	PF12854	341 - 373	2.6e-08	PPR repeat
PPR	PF01535	348 - 378	8.8e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18950
fragaria_vesca	FvH4_4g14110 FvH4_4g14110
malus_domestica	MD02G1277500.v1.1
prunus_persica	Prupe.1G570100_v2.0.a1 Prupe.3G113000_v2.0.a1 Prupe.3G113000_v2.0.a1
pyrus_communis	pycom12g09540
rosa_chinensis	RchiOBHm_Chr4g0419111 RchiOBHm_Chr4g0419121
rosa_laevigata	RLG00000007826
rosa_multiflora	Rmu_sc0000913.1_g000015 Rmu_sc0011831.1_g000001
rosa_roxburghii	Rroxscaffold_5G00362180
rosa_rugosa	Rorug04G0157100
rosa_samantha	Rh4AG218700 Rh4AG218800 Rh4BG220200 Rh4BG220300 Rh4CG230900 Rh4CG231000 Rh4DG217700 Rh4DG217800
rosa_wichuraiana	Rw4G018690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	690
AciI	CCGC	3 cut(s)	37, 329, 530
AclWI	GGATC	2 cut(s)	206, 1109
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	202
AfaI	GTAC	7 cut(s)	191, 520, 584, 944, 970, 1043, 1049
AfiI	CCNNNNNNNGG	2 cut(s)	409, 515
AflII	CTTAAG	1 cut(s)	908
AflIII	ACRYGT	1 cut(s)	1044
AgsI	TTSAA	3 cut(s)	21, 673, 981
AjnI	CCWGG	2 cut(s)	718, 1097
AloI	GAACNNNNNNTCC	2 cut(s)	164, 196
AluBI	AGCT	6 cut(s)	467, 614, 728, 877, 992, 1000
AluI	AGCT	6 cut(s)	467, 614, 728, 877, 992, 1000
Alw21I	GWGCWC	1 cut(s)	343
Alw26I	GTCTC	1 cut(s)	617
AlwI	GGATC	2 cut(s)	206, 1109
Ama87I	CYCGRG	3 cut(s)	291, 404, 508
AoxI	GGCC	2 cut(s)	3, 1095
ApeKI	GCWGC	3 cut(s)	241, 368, 611
ApoI	RAATTY	1 cut(s)	202
AsuC2I	CCSGG	2 cut(s)	509, 510
AsuHPI	GGTGA	1 cut(s)	823
AsuII	TTCGAA	1 cut(s)	200
AvaI	CYCGRG	3 cut(s)	291, 404, 508
BaeGI	GKGCMC	2 cut(s)	509, 823
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	247
Bbv12I	GWGCWC	1 cut(s)	343
BbvCI	CCTCAGC	1 cut(s)	882
BbvI	GCAGC	3 cut(s)	253, 380, 623
BccI	CCATC	5 cut(s)	159, 202, 589, 701, 1111
BciT130I	CCWGG	2 cut(s)	720, 1099
BcnI	CCSGG	2 cut(s)	509, 510
BcoDI	GTCTC	1 cut(s)	617
BfaI	CTAG	3 cut(s)	468, 555, 993
BfmI	CTRYAG	1 cut(s)	361
BfrI	CTTAAG	1 cut(s)	908
BisI	GCNGC	4 cut(s)	242, 369, 531, 612
BlsI	GCNGC	4 cut(s)	243, 370, 532, 613
Bme1390I	CCNGG	4 cut(s)	509, 510, 720, 1099
BmeT110I	CYCGRG	3 cut(s)	291, 404, 508
BmrFI	CCNGG	4 cut(s)	509, 510, 720, 1099
BpiI	GAAGAC	1 cut(s)	247
BplI	GAGNNNNNCTC	2 cut(s)	415, 447
BpmI	CTGGAG	1 cut(s)	519
Bpu10I	CCTNAGC	1 cut(s)	882
Bpu14I	TTCGAA	1 cut(s)	200
BpuMI	CCSGG	2 cut(s)	509, 510
BsaAI	YACGTR	1 cut(s)	1047
BsaJI	CCNNGG	4 cut(s)	508, 509, 718, 972
BsaXI	ACNNNNNCTCC	2 cut(s)	696, 726
Bsc4I	CCNNNNNNNGG	2 cut(s)	409, 515
Bse118I	RCCGGY	1 cut(s)	409
Bse3DI	GCAATG	3 cut(s)	256, 361, 807
BseBI	CCWGG	2 cut(s)	720, 1099
BseDI	CCNNGG	4 cut(s)	508, 509, 718, 972
BseLI	CCNNNNNNNGG	2 cut(s)	409, 515
BseMI	GCAATG	3 cut(s)	256, 361, 807
BseMII	CTCAG	2 cut(s)	741, 873
BseRI	GAGGAG	1 cut(s)	782
BseSI	GKGCMC	2 cut(s)	509, 823
BseXI	GCAGC	3 cut(s)	253, 380, 623
BseYI	CCCAGC	1 cut(s)	449
BsgI	GTGCAG	1 cut(s)	387
BshFI	GGCC	2 cut(s)	5, 1097
BsiHKAI	GWGCWC	1 cut(s)	343
BsiHKCI	CYCGRG	3 cut(s)	291, 404, 508
BsiSI	CCGG	2 cut(s)	410, 509
BslFI	GGGAC	1 cut(s)	701
BslI	CCNNNNNNNGG	2 cut(s)	409, 515
BsmAI	GTCTC	1 cut(s)	617
BsmFI	GGGAC	1 cut(s)	701
BsmI	GAATGC	1 cut(s)	532
BsnI	GGCC	2 cut(s)	5, 1097
BsoBI	CYCGRG	3 cut(s)	291, 404, 508
Bsp119I	TTCGAA	1 cut(s)	200
Bsp1286I	GDGCHC	3 cut(s)	343, 509, 823
Bsp1407I	TGTACA	1 cut(s)	942
Bsp143I	GATC	3 cut(s)	112, 211, 1101
Bsp19I	CCATGG	1 cut(s)	972
BspACI	CCGC	3 cut(s)	37, 329, 530
BspANI	GGCC	2 cut(s)	5, 1097
BspCNI	CTCAG	2 cut(s)	742, 874
BspMAI	CTGCAG	1 cut(s)	365
BspPI	GGATC	2 cut(s)	206, 1109
BspT104I	TTCGAA	1 cut(s)	200
BspTI	CTTAAG	1 cut(s)	908
BsrDI	GCAATG	3 cut(s)	256, 361, 807
BsrFI	RCCGGY	1 cut(s)	409
BsrGI	TGTACA	1 cut(s)	942
BssAI	RCCGGY	1 cut(s)	409
BssECI	CCNNGG	4 cut(s)	508, 509, 718, 972
BssMI	GATC	3 cut(s)	112, 211, 1101
BssT1I	CCWWGG	1 cut(s)	972
Bst2UI	CCWGG	2 cut(s)	720, 1099
Bst4CI	ACNGT	1 cut(s)	628
BstAFI	CTTAAG	1 cut(s)	908
BstAPI	GCANNNNNTGC	1 cut(s)	360
BstAUI	TGTACA	1 cut(s)	942
BstBAI	YACGTR	1 cut(s)	1047
BstBI	TTCGAA	1 cut(s)	200
BstC8I	GCNNGC	3 cut(s)	55, 361, 879
BstDEI	CTNAG	3 cut(s)	689, 750, 882
BstDSI	CCRYGG	1 cut(s)	972
BstKTI	GATC	3 cut(s)	115, 214, 1104
BstMAI	GTCTC	1 cut(s)	617
BstMBI	GATC	3 cut(s)	112, 211, 1101
BstMWI	GCNNNNNNNGC	2 cut(s)	360, 365
BstNI	CCWGG	2 cut(s)	720, 1099
BstNSI	RCATGY	1 cut(s)	53
BstSCI	CCNGG	4 cut(s)	507, 508, 718, 1097
BstSFI	CTRYAG	1 cut(s)	361
BstSLI	GKGCMC	2 cut(s)	509, 823
BstV1I	GCAGC	3 cut(s)	253, 380, 623
BstV2I	GAAGAC	1 cut(s)	247
BstX2I	RGATCY	1 cut(s)	1101
BstYI	RGATCY	1 cut(s)	1101
BsuRI	GGCC	2 cut(s)	5, 1097
BtgI	CCRYGG	1 cut(s)	972
BtsI	GCAGTG	1 cut(s)	370
BtsIMutI	CAGTG	1 cut(s)	370
Cac8I	GCNNGC	3 cut(s)	55, 361, 879
Cfr10I	RCCGGY	1 cut(s)	409
Cfr9I	CCCGGG	1 cut(s)	508
Csp6I	GTAC	7 cut(s)	190, 519, 583, 943, 969, 1042, 1048
CviAII	CATG	9 cut(s)	50, 143, 797, 940, 952, 959, 973, 1057, 1064
CviQI	GTAC	7 cut(s)	190, 519, 583, 943, 969, 1042, 1048
DdeI	CTNAG	3 cut(s)	689, 750, 882
DpnI	GATC	3 cut(s)	114, 213, 1103
DpnII	GATC	3 cut(s)	112, 211, 1101
DrdI	GACNNNNNNGTC	1 cut(s)	690
DseDI	GACNNNNNNGTC	1 cut(s)	690
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	26
Eco130I	CCWWGG	1 cut(s)	972
Eco147I	AGGCCT	1 cut(s)	1097
Eco32I	GATATC	1 cut(s)	747
Eco88I	CYCGRG	3 cut(s)	291, 404, 508
EcoRII	CCWGG	2 cut(s)	718, 1097
EcoRV	GATATC	1 cut(s)	747
EcoT14I	CCWWGG	1 cut(s)	972
ErhI	CCWWGG	1 cut(s)	972
FaeI	CATG	9 cut(s)	53, 146, 800, 943, 955, 962, 976, 1060, 1067
FaqI	GGGAC	1 cut(s)	701
FatI	CATG	9 cut(s)	49, 142, 796, 939, 951, 958, 972, 1056, 1063
Fnu4HI	GCNGC	4 cut(s)	242, 369, 531, 612
Fsp4HI	GCNGC	4 cut(s)	242, 369, 531, 612
FspBI	CTAG	3 cut(s)	468, 555, 993
GluI	GCNGC	4 cut(s)	242, 369, 531, 612
GsaI	CCCAGC	1 cut(s)	453
GsuI	CTGGAG	1 cut(s)	519
HaeIII	GGCC	2 cut(s)	5, 1097
HapII	CCGG	2 cut(s)	410, 509
Hin1II	CATG	9 cut(s)	53, 146, 800, 943, 955, 962, 976, 1060, 1067
HinfI	GANTC	2 cut(s)	955, 1060
HpaII	CCGG	2 cut(s)	410, 509
HphI	GGTGA	1 cut(s)	823
Hpy166II	GTNNAC	3 cut(s)	945, 1044, 1139
Hpy188I	TCNGA	8 cut(s)	80, 112, 187, 211, 751, 787, 894, 1077
Hpy188III	TCNNGA	2 cut(s)	293, 929
Hpy8I	GTNNAC	3 cut(s)	945, 1044, 1139
HpyAV	CCTTC	2 cut(s)	290, 760
HpyCH4III	ACNGT	1 cut(s)	628
HpyCH4IV	ACGT	1 cut(s)	1046
HpyCH4V	TGCA	7 cut(s)	363, 368, 546, 611, 800, 864, 1110
HpyF10VI	GCNNNNNNNGC	2 cut(s)	360, 365
HpyF3I	CTNAG	3 cut(s)	689, 750, 882
HpySE526I	ACGT	1 cut(s)	1046
Hsp92II	CATG	9 cut(s)	53, 146, 800, 943, 955, 962, 976, 1060, 1067
Kzo9I	GATC	3 cut(s)	112, 211, 1101
LmnI	GCTCC	1 cut(s)	931
Lsp1109I	GCAGC	3 cut(s)	253, 380, 623
MaeI	CTAG	3 cut(s)	468, 555, 993
MaeII	ACGT	1 cut(s)	1046
MalI	GATC	3 cut(s)	114, 213, 1103
MboI	GATC	3 cut(s)	112, 211, 1101
MboII	GAAGA	4 cut(s)	9, 189, 247, 265
MfeI	CAATTG	1 cut(s)	853
MflI	RGATCY	1 cut(s)	1101
MhlI	GDGCHC	3 cut(s)	343, 509, 823
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	202, 829, 853
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	103, 399
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	9 cut(s)	26, 384, 459, 480, 488, 549, 900, 909, 1071
MslI	CAYNNNNRTG	1 cut(s)	950
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	614
MspCI	CTTAAG	1 cut(s)	908
MspI	CCGG	2 cut(s)	410, 509
MspR9I	CCNGG	4 cut(s)	509, 510, 720, 1099
MunI	CAATTG	1 cut(s)	853
Mva1269I	GAATGC	1 cut(s)	532
MvaI	CCWGG	2 cut(s)	720, 1099
MwoI	GCNNNNNNNGC	2 cut(s)	360, 365
NciI	CCSGG	2 cut(s)	509, 510
NcoI	CCATGG	1 cut(s)	972
NdeII	GATC	3 cut(s)	112, 211, 1101
NlaIII	CATG	9 cut(s)	53, 146, 800, 943, 955, 962, 976, 1060, 1067
NspI	RCATGY	1 cut(s)	53
NspV	TTCGAA	1 cut(s)	200
PaeR7I	CTCGAG	1 cut(s)	291
PceI	AGGCCT	1 cut(s)	1097
PctI	GAATGC	1 cut(s)	532
PfeI	GAWTC	2 cut(s)	955, 1060
PkrI	GCNGC	4 cut(s)	243, 370, 532, 613
Ppu21I	YACGTR	1 cut(s)	1047
Psp6I	CCWGG	2 cut(s)	718, 1097
PspFI	CCCAGC	1 cut(s)	449
PspGI	CCWGG	2 cut(s)	718, 1097
PsrI	GAACNNNNNNTAC	2 cut(s)	961, 993
PstI	CTGCAG	1 cut(s)	365
PsuI	RGATCY	1 cut(s)	1101
PvuII	CAGCTG	1 cut(s)	614
RsaI	GTAC	7 cut(s)	191, 520, 584, 944, 970, 1043, 1049
RsaNI	GTAC	7 cut(s)	190, 519, 583, 943, 969, 1042, 1048
RseI	CAYNNNNRTG	1 cut(s)	950
SaqAI	TTAA	9 cut(s)	26, 384, 459, 480, 488, 549, 900, 909, 1071
SatI	GCNGC	4 cut(s)	242, 369, 531, 612
Sau3AI	GATC	3 cut(s)	112, 211, 1101
ScrFI	CCNGG	4 cut(s)	509, 510, 720, 1099
SduI	GDGCHC	3 cut(s)	343, 509, 823
SfcI	CTRYAG	1 cut(s)	361
Sfr274I	CTCGAG	1 cut(s)	291
SfuI	TTCGAA	1 cut(s)	200
SlaI	CTCGAG	1 cut(s)	291
SmaI	CCCGGG	1 cut(s)	510
SmiMI	CAYNNNNRTG	1 cut(s)	950
SmlI	CTYRAG	2 cut(s)	291, 908
SmoI	CTYRAG	2 cut(s)	291, 908
Sse9I	AATT	3 cut(s)	202, 829, 853
SseBI	AGGCCT	1 cut(s)	1097
SsiI	CCGC	3 cut(s)	37, 329, 530
SspMI	CTAG	3 cut(s)	468, 555, 993
StuI	AGGCCT	1 cut(s)	1097
StyD4I	CCNGG	4 cut(s)	507, 508, 718, 1097
StyI	CCWWGG	1 cut(s)	972
TaaI	ACNGT	1 cut(s)	628
TaiI	ACGT	1 cut(s)	1049
TaqI	TCGA	4 cut(s)	200, 292, 643, 735
TasI	AATT	3 cut(s)	202, 829, 853
TatI	WGTACW	2 cut(s)	942, 1041
TauI	GCSGC	1 cut(s)	533
TfiI	GAWTC	2 cut(s)	955, 1060
Tru1I	TTAA	9 cut(s)	26, 384, 459, 480, 488, 549, 900, 909, 1071
Tru9I	TTAA	9 cut(s)	26, 384, 459, 480, 488, 549, 900, 909, 1071
TscAI	CASTG	1 cut(s)	370
TseI	GCWGC	3 cut(s)	241, 368, 611
TspDTI	ATGAA	3 cut(s)	885, 947, 1052
TspGWI	ACGGA	3 cut(s)	79, 215, 578
TspMI	CCCGGG	1 cut(s)	508
TspRI	CASTG	1 cut(s)	370
Vha464I	CTTAAG	1 cut(s)	908
XapI	RAATTY	1 cut(s)	202
XceI	RCATGY	1 cut(s)	53
XhoI	CTCGAG	1 cut(s)	291
XmaI	CCCGGG	1 cut(s)	508
XspI	CTAG	3 cut(s)	468, 555, 993

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.