Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000913.1

Orthogroup ID

OG0007941

Physical Location & Seq

Genomic Coordinates Reverse (-)

83742 .. 85040

Gene Structure 1299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000913.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

atggccagagcttcaacttcaatcttaatattcctccgccaaaaccctcgtgctctcaaaaaacccaaaacccaaatccgataccttaccgtagaaaccaaagattgtgactttacacaagttgcccaacagatttgtaagatcatcagaacaaaacccagatgggagaacactctgtcctctgagtacccttctttaaatttctctgatcctcggtttgtccgtgaggttttgaagcagcagaacagtgtgctcctttcggttcggttcttcttgtggttgagctctcgaaaagggttttcgccggaccccatttcgtgtaatgcggttttcaatgctcttgtggaggctaaggcctgcagtgcagcgcaatcttttcttaagtctacgggttttagccccgagccggtttcattggaaagttatgctcggtgtctttgggaggctgggaggattaaggaagcctgtgatgtgtttgagaggttgaaaggggctggagtgtgcccgtcgattgggacttggaatgcggctttgtcagggtgcctgaaggctaagaggacaggtatggtttggaagttgtatcaagaaatgatggaatatggtgttgtagctgatgttgagactgttgggtgtctcattcgaggattttgtgatgataatgaggtattcaaaggttatggacttcttagtcaggttttggaagatggagtagtccctggaaaagctgctttcaatcggttgatatctgagttttgtaaggagaaggaatatactaaagtgtctgaactcctccatacaatgatggtgatgaactgtgctcccgataattttacttatcaggaggtaatcaattggttgtgcaagaaaggaaggccatatgagggttttcggattttcaatgatcttaagtatagaggctatgctcctgatattgtcatgtacacaaccatgattcatggtctttgtacgatgggttggcttggagaagctaggaagctatggtttgagatgattgataagggatttcatccaagcaagtacacttacaacaccctaattcatgggttttgtaagagtggaattttagaacaggcccagatgtgcagggagatgtgtgataagggatttcgtccaagcaagtacactaacaataccatgattcatgggttttgtaagagtggaaatttcgaacaggccaggatcatttgcaaggagatgtgtgataaaggttatatggaaaccacaatcaatcaaaacgcaatgatgacagggctttgtttacatggaaggaccggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

432

Amino Acids

49.16

Weight (kDa)

8.86

Isoelectric Point (pI)

28.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18950
fragaria_vesca	FvH4_4g14110 FvH4_4g14110
malus_domestica	MD02G1277500.v1.1
prunus_persica	Prupe.1G570100_v2.0.a1 Prupe.3G113000_v2.0.a1 Prupe.3G113000_v2.0.a1
pyrus_communis	pycom12g09540
rosa_chinensis	RchiOBHm_Chr4g0419111 RchiOBHm_Chr4g0419121
rosa_laevigata	RLG00000007826
rosa_multiflora	Rmu_sc0000913.1_g000015 Rmu_sc0011831.1_g000001
rosa_roxburghii	Rroxscaffold_5G00362180
rosa_rugosa	Rorug04G0157100
rosa_samantha	Rh4AG218700 Rh4AG218800 Rh4BG220200 Rh4BG220300 Rh4CG230900 Rh4CG231000 Rh4DG217700 Rh4DG217800
rosa_wichuraiana	Rw4G018690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	687
AccB1I	GGYRCC	1 cut(s)	540
AccI	GTMKAC	1 cut(s)	386
AciI	CCGC	3 cut(s)	37, 326, 527
AclWI	GGATC	2 cut(s)	203, 1208
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	199, 1080, 1183
AcuI	CTGAAG	1 cut(s)	566
AfaI	GTAC	5 cut(s)	188, 941, 967, 1040, 1142
AfiI	CCNNNNNNNGG	3 cut(s)	406, 512, 881
AflII	CTTAAG	2 cut(s)	380, 905
AgeI	ACCGGT	1 cut(s)	1292
AgsI	TTSAA	8 cut(s)	15, 21, 235, 334, 487, 670, 733, 898
AjnI	CCWGG	2 cut(s)	715, 1196
AloI	GAACNNNNNNTCC	2 cut(s)	161, 193
AluBI	AGCT	6 cut(s)	11, 285, 611, 725, 989, 997
AluI	AGCT	6 cut(s)	11, 285, 611, 725, 989, 997
Alw21I	GWGCWC	4 cut(s)	55, 255, 287, 820
Alw26I	GTCTC	2 cut(s)	614, 638
AlwI	GGATC	2 cut(s)	203, 1208
Ama87I	CYCGRG	1 cut(s)	401
AoxI	GGCC	5 cut(s)	3, 354, 872, 1092, 1194
ApeKI	GCWGC	3 cut(s)	238, 365, 725
ApoI	RAATTY	3 cut(s)	199, 1080, 1183
AsiGI	ACCGGT	1 cut(s)	1292
AspLEI	GCGC	1 cut(s)	370
AspS9I	GGNCC	3 cut(s)	307, 1093, 1290
AsuHPI	GGTGA	1 cut(s)	817
AsuII	TTCGAA	1 cut(s)	1188
AvaI	CYCGRG	1 cut(s)	401
AvaII	GGWCC	2 cut(s)	307, 1290
BaeGI	GKGCMC	1 cut(s)	506
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	540
BanII	GRGCYC	1 cut(s)	287
BauI	CACGAG	1 cut(s)	48
Bbv12I	GWGCWC	4 cut(s)	55, 255, 287, 820
BbvI	GCAGC	3 cut(s)	250, 377, 712
BccI	CCATC	5 cut(s)	156, 586, 698, 796, 964
BciT130I	CCWGG	2 cut(s)	717, 1198
BcoDI	GTCTC	2 cut(s)	614, 638
BfaI	CTAG	1 cut(s)	990
BfmI	CTRYAG	1 cut(s)	358
BfrI	CTTAAG	2 cut(s)	380, 905
BisI	GCNGC	4 cut(s)	239, 366, 528, 726
BlsI	GCNGC	4 cut(s)	240, 367, 529, 727
Bme1390I	CCNGG	2 cut(s)	717, 1198
Bme18I	GGWCC	2 cut(s)	307, 1290
BmeT110I	CYCGRG	1 cut(s)	401
BmgT120I	GGNCC	3 cut(s)	307, 1093, 1290
BmiI	GGNNCC	2 cut(s)	309, 542
BmrFI	CCNGG	2 cut(s)	717, 1198
BpmI	CTGGAG	1 cut(s)	516
Bpu10I	CCTNAGC	1 cut(s)	351
Bpu14I	TTCGAA	1 cut(s)	1188
BsaJI	CCNNGG	2 cut(s)	212, 715
BsaWI	WCCGGW	1 cut(s)	1292
Bsc4I	CCNNNNNNNGG	3 cut(s)	406, 512, 881
Bse118I	RCCGGY	2 cut(s)	406, 1292
Bse3DI	GCAATG	1 cut(s)	1266
BseBI	CCWGG	2 cut(s)	717, 1198
BseDI	CCNNGG	2 cut(s)	212, 715
BseGI	GGATG	1 cut(s)	1027
BseLI	CCNNNNNNNGG	3 cut(s)	406, 512, 881
BseMI	GCAATG	1 cut(s)	1266
BseMII	CTCAG	2 cut(s)	174, 738
BseRI	GAGGAG	1 cut(s)	779
BseSI	GKGCMC	1 cut(s)	506
BseXI	GCAGC	3 cut(s)	250, 377, 712
BseYI	CCCAGC	1 cut(s)	446
BsgI	GTGCAG	2 cut(s)	384, 1123
BshFI	GGCC	5 cut(s)	5, 356, 874, 1094, 1196
BshNI	GGYRCC	1 cut(s)	540
BshTI	ACCGGT	1 cut(s)	1292
BsiHKAI	GWGCWC	4 cut(s)	55, 255, 287, 820
BsiHKCI	CYCGRG	1 cut(s)	401
BsiSI	CCGG	3 cut(s)	305, 407, 1293
BslFI	GGGAC	2 cut(s)	529, 698
BslI	CCNNNNNNNGG	3 cut(s)	406, 512, 881
BsmAI	GTCTC	2 cut(s)	614, 638
BsmFI	GGGAC	2 cut(s)	529, 698
BsmI	GAATGC	1 cut(s)	529
BsnI	GGCC	5 cut(s)	5, 356, 874, 1094, 1196
BsoBI	CYCGRG	1 cut(s)	401
Bsp119I	TTCGAA	1 cut(s)	1188
Bsp1286I	GDGCHC	5 cut(s)	55, 255, 287, 506, 820
Bsp1407I	TGTACA	1 cut(s)	939
Bsp143I	GATC	4 cut(s)	141, 208, 901, 1200
BspACI	CCGC	3 cut(s)	37, 326, 527
BspANI	GGCC	5 cut(s)	5, 356, 874, 1094, 1196
BspCNI	CTCAG	2 cut(s)	175, 739
BspLI	GGNNCC	2 cut(s)	309, 542
BspMAI	CTGCAG	1 cut(s)	362
BspPI	GGATC	2 cut(s)	203, 1208
BspT104I	TTCGAA	1 cut(s)	1188
BspT107I	GGYRCC	1 cut(s)	540
BspTI	CTTAAG	2 cut(s)	380, 905
BsrDI	GCAATG	1 cut(s)	1266
BsrFI	RCCGGY	2 cut(s)	406, 1292
BsrGI	TGTACA	1 cut(s)	939
BssAI	RCCGGY	2 cut(s)	406, 1292
BssECI	CCNNGG	2 cut(s)	212, 715
BssMI	GATC	4 cut(s)	141, 208, 901, 1200
BssSI	CACGAG	1 cut(s)	48
Bst2BI	CACGAG	1 cut(s)	48
Bst2UI	CCWGG	2 cut(s)	717, 1198
Bst4CI	ACNGT	4 cut(s)	91, 248, 625, 815
BstAFI	CTTAAG	2 cut(s)	380, 905
BstAUI	TGTACA	1 cut(s)	939
BstBI	TTCGAA	1 cut(s)	1188
BstC8I	GCNNGC	1 cut(s)	358
BstDEI	CTNAG	5 cut(s)	183, 351, 552, 686, 747
BstF5I	GGATG	1 cut(s)	1027
BstHHI	GCGC	1 cut(s)	370
BstKTI	GATC	4 cut(s)	144, 211, 904, 1203
BstMAI	GTCTC	2 cut(s)	614, 638
BstMBI	GATC	4 cut(s)	141, 208, 901, 1200
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstNI	CCWGG	2 cut(s)	717, 1198
BstSCI	CCNGG	2 cut(s)	715, 1196
BstSFI	CTRYAG	1 cut(s)	358
BstSLI	GKGCMC	1 cut(s)	506
BstV1I	GCAGC	3 cut(s)	250, 377, 712
BsuRI	GGCC	5 cut(s)	5, 356, 874, 1094, 1196
BtsCI	GGATG	1 cut(s)	1027
BtsI	GCAGTG	1 cut(s)	367
BtsIMutI	CAGTG	2 cut(s)	253, 367
Cac8I	GCNNGC	1 cut(s)	358
CfoI	GCGC	1 cut(s)	370
Cfr10I	RCCGGY	2 cut(s)	406, 1292
Cfr13I	GGNCC	3 cut(s)	307, 1093, 1290
Csp6I	GTAC	5 cut(s)	187, 940, 966, 1039, 1141
CspAI	ACCGGT	1 cut(s)	1292
CviAII	CATG	7 cut(s)	937, 949, 956, 1061, 1156, 1163, 1283
CviQI	GTAC	5 cut(s)	187, 940, 966, 1039, 1141
DdeI	CTNAG	5 cut(s)	183, 351, 552, 686, 747
DpnI	GATC	4 cut(s)	143, 210, 903, 1202
DpnII	GATC	4 cut(s)	141, 208, 901, 1200
DraI	TTTAAA	1 cut(s)	198
DrdI	GACNNNNNNGTC	1 cut(s)	687
DseDI	GACNNNNNNGTC	1 cut(s)	687
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	26
Ecl136II	GAGCTC	1 cut(s)	285
Eco147I	AGGCCT	1 cut(s)	356
Eco24I	GRGCYC	1 cut(s)	287
Eco32I	GATATC	1 cut(s)	744
Eco47I	GGWCC	2 cut(s)	307, 1290
Eco53kI	GAGCTC	1 cut(s)	285
Eco57I	CTGAAG	1 cut(s)	566
Eco88I	CYCGRG	1 cut(s)	401
EcoICRI	GAGCTC	1 cut(s)	285
EcoRII	CCWGG	2 cut(s)	715, 1196
EcoRV	GATATC	1 cut(s)	744
EcoT38I	GRGCYC	1 cut(s)	287
FaeI	CATG	7 cut(s)	940, 952, 959, 1064, 1159, 1166, 1286
FaqI	GGGAC	2 cut(s)	529, 698
FatI	CATG	7 cut(s)	936, 948, 955, 1060, 1155, 1162, 1282
FauNDI	CATATG	1 cut(s)	877
FblI	GTMKAC	1 cut(s)	386
Fnu4HI	GCNGC	4 cut(s)	239, 366, 528, 726
FokI	GGATG	1 cut(s)	1014
FriOI	GRGCYC	1 cut(s)	287
Fsp4HI	GCNGC	4 cut(s)	239, 366, 528, 726
FspBI	CTAG	1 cut(s)	990
GlaI	GCGC	1 cut(s)	369
GluI	GCNGC	4 cut(s)	239, 366, 528, 726
GsaI	CCCAGC	1 cut(s)	450
GsuI	CTGGAG	1 cut(s)	516
HaeIII	GGCC	5 cut(s)	5, 356, 874, 1094, 1196
HapII	CCGG	3 cut(s)	305, 407, 1293
HhaI	GCGC	1 cut(s)	370
Hin1II	CATG	7 cut(s)	940, 952, 959, 1064, 1159, 1166, 1286
Hin6I	GCGC	1 cut(s)	368
HinP1I	GCGC	1 cut(s)	368
HinfI	GANTC	2 cut(s)	952, 1159
HpaII	CCGG	3 cut(s)	305, 407, 1293
HphI	GGTGA	1 cut(s)	817
Hpy166II	GTNNAC	5 cut(s)	387, 942, 1041, 1143, 1280
Hpy188I	TCNGA	7 cut(s)	80, 149, 184, 208, 748, 784, 891
Hpy188III	TCNNGA	5 cut(s)	288, 584, 821, 839, 926
Hpy8I	GTNNAC	5 cut(s)	387, 942, 1041, 1143, 1280
Hpy99I	CGWCG	1 cut(s)	511
HpyAV	CCTTC	5 cut(s)	201, 541, 757, 864, 1281
HpyCH4III	ACNGT	4 cut(s)	91, 248, 625, 815
HpyCH4V	TGCA	5 cut(s)	360, 365, 861, 1104, 1209
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpyF3I	CTNAG	5 cut(s)	183, 351, 552, 686, 747
Hsp92II	CATG	7 cut(s)	940, 952, 959, 1064, 1159, 1166, 1286
HspAI	GCGC	1 cut(s)	368
Kzo9I	GATC	4 cut(s)	141, 208, 901, 1200
LmnI	GCTCC	3 cut(s)	258, 823, 928
Lsp1109I	GCAGC	3 cut(s)	250, 377, 712
MaeI	CTAG	1 cut(s)	990
MaeIII	GTNAC	1 cut(s)	107
MalI	GATC	4 cut(s)	143, 210, 903, 1202
MboI	GATC	4 cut(s)	141, 208, 901, 1200
MboII	GAAGA	2 cut(s)	262, 713
MfeI	CAATTG	1 cut(s)	850
MhlI	GDGCHC	5 cut(s)	55, 255, 287, 506, 820
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	199, 826, 850, 1056, 1080, 1183
MluNI	TGGCCA	1 cut(s)	5
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	5 cut(s)	26, 197, 381, 456, 906
MslI	CAYNNNNRTG	1 cut(s)	947
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	2 cut(s)	380, 905
MspI	CCGG	3 cut(s)	305, 407, 1293
MspR9I	CCNGG	2 cut(s)	717, 1198
MunI	CAATTG	1 cut(s)	850
Mva1269I	GAATGC	1 cut(s)	529
MvaI	CCWGG	2 cut(s)	717, 1198
MwoI	GCNNNNNNNGC	1 cut(s)	362
NdeI	CATATG	1 cut(s)	877
NdeII	GATC	4 cut(s)	141, 208, 901, 1200
NlaIII	CATG	7 cut(s)	940, 952, 959, 1064, 1159, 1166, 1286
NlaIV	GGNNCC	2 cut(s)	309, 542
NmuCI	GTSAC	1 cut(s)	107
NspV	TTCGAA	1 cut(s)	1188
PceI	AGGCCT	1 cut(s)	356
PcsI	WCGNNNNNNNCGW	1 cut(s)	220
PctI	GAATGC	1 cut(s)	529
PfeI	GAWTC	2 cut(s)	952, 1159
PinAI	ACCGGT	1 cut(s)	1292
PkrI	GCNGC	4 cut(s)	240, 367, 529, 727
Psp124BI	GAGCTC	1 cut(s)	287
Psp6I	CCWGG	2 cut(s)	715, 1196
PspFI	CCCAGC	1 cut(s)	446
PspGI	CCWGG	2 cut(s)	715, 1196
PspN4I	GGNNCC	2 cut(s)	309, 542
PspPI	GGNCC	3 cut(s)	307, 1093, 1290
PstI	CTGCAG	1 cut(s)	362
RsaI	GTAC	5 cut(s)	188, 941, 967, 1040, 1142
RsaNI	GTAC	5 cut(s)	187, 940, 966, 1039, 1141
RseI	CAYNNNNRTG	1 cut(s)	947
SacI	GAGCTC	1 cut(s)	287
SaqAI	TTAA	5 cut(s)	26, 197, 381, 456, 906
SatI	GCNGC	4 cut(s)	239, 366, 528, 726
Sau3AI	GATC	4 cut(s)	141, 208, 901, 1200
Sau96I	GGNCC	3 cut(s)	307, 1093, 1290
ScrFI	CCNGG	2 cut(s)	717, 1198
SduI	GDGCHC	5 cut(s)	55, 255, 287, 506, 820
SfcI	CTRYAG	1 cut(s)	358
SfuI	TTCGAA	1 cut(s)	1188
SinI	GGWCC	2 cut(s)	307, 1290
SmiMI	CAYNNNNRTG	1 cut(s)	947
SmlI	CTYRAG	2 cut(s)	380, 905
SmoI	CTYRAG	2 cut(s)	380, 905
Sse9I	AATT	6 cut(s)	199, 826, 850, 1056, 1080, 1183
SseBI	AGGCCT	1 cut(s)	356
SsiI	CCGC	3 cut(s)	37, 326, 527
SspI	AATATT	1 cut(s)	30
SspMI	CTAG	1 cut(s)	990
SstI	GAGCTC	1 cut(s)	287
StuI	AGGCCT	1 cut(s)	356
StyD4I	CCNGG	2 cut(s)	715, 1196
TaaI	ACNGT	4 cut(s)	91, 248, 625, 815
TaqI	TCGA	4 cut(s)	289, 509, 640, 1188
TasI	AATT	6 cut(s)	199, 826, 850, 1056, 1080, 1183
TatI	WGTACW	3 cut(s)	939, 1038, 1140
TauI	GCSGC	1 cut(s)	530
TfiI	GAWTC	2 cut(s)	952, 1159
Tru1I	TTAA	5 cut(s)	26, 197, 381, 456, 906
Tru9I	TTAA	5 cut(s)	26, 197, 381, 456, 906
TscAI	CASTG	2 cut(s)	253, 367
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	3 cut(s)	238, 365, 725
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	6 cut(s)	402, 824, 944, 1016, 1049, 1151
TspGWI	ACGGA	1 cut(s)	212
TspRI	CASTG	2 cut(s)	253, 367
Vha464I	CTTAAG	2 cut(s)	380, 905
VpaK11BI	GGWCC	2 cut(s)	307, 1290
XapI	RAATTY	3 cut(s)	199, 1080, 1183
XmiI	GTMKAC	1 cut(s)	386
XspI	CTAG	1 cut(s)	990

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.