Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G18950 |
| fragaria_vesca | FvH4_4g14110 FvH4_4g14110 |
| malus_domestica | MD02G1277500.v1.1 |
| prunus_persica | Prupe.1G570100_v2.0.a1 Prupe.3G113000_v2.0.a1 Prupe.3G113000_v2.0.a1 |
| pyrus_communis | pycom12g09540 |
| rosa_chinensis | RchiOBHm_Chr4g0419111 RchiOBHm_Chr4g0419121 |
| rosa_laevigata | RLG00000007826 |
| rosa_multiflora | Rmu_sc0000913.1_g000015 Rmu_sc0011831.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00362180 |
| rosa_rugosa | Rorug04G0157100 |
| rosa_samantha | Rh4AG218700 Rh4AG218800 Rh4BG220200 Rh4BG220300 Rh4CG230900 Rh4CG231000 Rh4DG217700 Rh4DG217800 |
| rosa_wichuraiana | Rw4G018690 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 99 |
| AflIII | ACRYGT | 1 cut(s) | 299 |
| AgsI | TTSAA | 4 cut(s) | 20, 147, 296, 336 |
| AluBI | AGCT | 1 cut(s) | 121 |
| AluI | AGCT | 1 cut(s) | 121 |
| Alw26I | GTCTC | 1 cut(s) | 167 |
| AlwI | GGATC | 1 cut(s) | 99 |
| AseI | ATTAAT | 1 cut(s) | 51 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 142 |
| BbsI | GAAGAC | 1 cut(s) | 8 |
| BbvCI | CCTCAGC | 1 cut(s) | 81 |
| BclI | TGATCA | 1 cut(s) | 64 |
| BcoDI | GTCTC | 1 cut(s) | 167 |
| BfaI | CTAG | 1 cut(s) | 305 |
| BglII | AGATCT | 1 cut(s) | 312 |
| BpiI | GAAGAC | 1 cut(s) | 8 |
| Bpu10I | CCTNAGC | 1 cut(s) | 81 |
| Bse3DI | GCAATG | 1 cut(s) | 111 |
| BseGI | GGATG | 1 cut(s) | 190 |
| BseMI | GCAATG | 1 cut(s) | 111 |
| BseMII | CTCAG | 2 cut(s) | 72, 247 |
| BsmAI | GTCTC | 1 cut(s) | 167 |
| BsmI | GAATGC | 1 cut(s) | 286 |
| Bsp143I | GATC | 3 cut(s) | 64, 91, 312 |
| BspCNI | CTCAG | 2 cut(s) | 73, 246 |
| BspHI | TCATGA | 1 cut(s) | 37 |
| BspPI | GGATC | 1 cut(s) | 99 |
| BsrDI | GCAATG | 1 cut(s) | 111 |
| BssMI | GATC | 3 cut(s) | 64, 91, 312 |
| BstDEI | CTNAG | 2 cut(s) | 81, 233 |
| BstF5I | GGATG | 1 cut(s) | 190 |
| BstKTI | GATC | 3 cut(s) | 67, 94, 315 |
| BstMAI | GTCTC | 1 cut(s) | 167 |
| BstMBI | GATC | 3 cut(s) | 64, 91, 312 |
| BstNSI | RCATGY | 1 cut(s) | 303 |
| BstV2I | GAAGAC | 1 cut(s) | 8 |
| BstX2I | RGATCY | 1 cut(s) | 312 |
| BstYI | RGATCY | 1 cut(s) | 312 |
| BtsCI | GGATG | 1 cut(s) | 190 |
| BtsI | GCAGTG | 1 cut(s) | 331 |
| BtsIMutI | CAGTG | 1 cut(s) | 331 |
| CciI | TCATGA | 1 cut(s) | 37 |
| CviAII | CATG | 2 cut(s) | 38, 300 |
| CviJI | RGCY | 1 cut(s) | 121 |
| CviKI_1 | RGCY | 1 cut(s) | 121 |
| DdeI | CTNAG | 2 cut(s) | 81, 233 |
| DpnI | GATC | 3 cut(s) | 66, 93, 314 |
| DpnII | GATC | 3 cut(s) | 64, 91, 312 |
| FaeI | CATG | 2 cut(s) | 41, 303 |
| FaiI | YATR | 7 cut(s) | 39, 45, 228, 245, 247, 252, 301 |
| FatI | CATG | 2 cut(s) | 37, 299 |
| FbaI | TGATCA | 1 cut(s) | 64 |
| FokI | GGATG | 1 cut(s) | 197 |
| FspBI | CTAG | 1 cut(s) | 305 |
| Hin1II | CATG | 2 cut(s) | 41, 303 |
| HinfI | GANTC | 2 cut(s) | 188, 231 |
| Hpy166II | GTNNAC | 1 cut(s) | 216 |
| Hpy188III | TCNNGA | 2 cut(s) | 38, 235 |
| Hpy8I | GTNNAC | 1 cut(s) | 216 |
| HpyAV | CCTTC | 1 cut(s) | 314 |
| HpyCH4IV | ACGT | 1 cut(s) | 218 |
| HpyCH4V | TGCA | 1 cut(s) | 104 |
| HpyF3I | CTNAG | 2 cut(s) | 81, 233 |
| HpySE526I | ACGT | 1 cut(s) | 218 |
| Hsp92II | CATG | 2 cut(s) | 41, 303 |
| Ksp22I | TGATCA | 1 cut(s) | 64 |
| Kzo9I | GATC | 3 cut(s) | 64, 91, 312 |
| LpnPI | CCDG | 2 cut(s) | 43, 220 |
| MaeI | CTAG | 1 cut(s) | 305 |
| MaeII | ACGT | 1 cut(s) | 218 |
| MalI | GATC | 3 cut(s) | 66, 93, 314 |
| MboI | GATC | 3 cut(s) | 64, 91, 312 |
| MboII | GAAGA | 3 cut(s) | 8, 16, 322 |
| MflI | RGATCY | 1 cut(s) | 312 |
| MluCI | AATT | 1 cut(s) | 24 |
| MlyI | GAGTC | 1 cut(s) | 225 |
| MmeI | TCCRAC | 1 cut(s) | 162 |
| MnlI | CCTC | 1 cut(s) | 76 |
| MroXI | GAANNNNTTC | 1 cut(s) | 142 |
| MseI | TTAA | 1 cut(s) | 51 |
| Mva1269I | GAATGC | 1 cut(s) | 286 |
| NdeII | GATC | 3 cut(s) | 64, 91, 312 |
| NlaIII | CATG | 2 cut(s) | 41, 303 |
| NspI | RCATGY | 1 cut(s) | 303 |
| PagI | TCATGA | 1 cut(s) | 37 |
| PciI | ACATGT | 1 cut(s) | 299 |
| PctI | GAATGC | 1 cut(s) | 286 |
| PdmI | GAANNNNTTC | 1 cut(s) | 142 |
| PfeI | GAWTC | 1 cut(s) | 188 |
| PleI | GAGTC | 1 cut(s) | 225 |
| PpsI | GAGTC | 1 cut(s) | 225 |
| PscI | ACATGT | 1 cut(s) | 299 |
| PshBI | ATTAAT | 1 cut(s) | 51 |
| PsuI | RGATCY | 1 cut(s) | 312 |
| SaqAI | TTAA | 1 cut(s) | 51 |
| Sau3AI | GATC | 3 cut(s) | 64, 91, 312 |
| SchI | GAGTC | 1 cut(s) | 225 |
| SetI | ASST | 7 cut(s) | 16, 123, 143, 182, 221, 226, 341 |
| SgeI | CNNG | 9 cut(s) | 42, 50, 80, 163, 209, 247, 312, 317, 328 |
| Sse9I | AATT | 1 cut(s) | 24 |
| SspMI | CTAG | 1 cut(s) | 305 |
| TaiI | ACGT | 1 cut(s) | 221 |
| TasI | AATT | 1 cut(s) | 24 |
| TfiI | GAWTC | 1 cut(s) | 188 |
| Tru1I | TTAA | 1 cut(s) | 51 |
| Tru9I | TTAA | 1 cut(s) | 51 |
| TscAI | CASTG | 1 cut(s) | 331 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspRI | CASTG | 1 cut(s) | 331 |
| VspI | ATTAAT | 1 cut(s) | 51 |
| XceI | RCATGY | 1 cut(s) | 303 |
| XmnI | GAANNNNTTC | 1 cut(s) | 142 |
| XspI | CTAG | 1 cut(s) | 305 |