Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007941

Physical Location & Seq

Genomic Coordinates Reverse (-)

46459513 .. 46460808

Gene Structure 1296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G570100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGTTATGTTTATGGACACGTGTCATGTGTTTAAAGGGATTGGAGTGTGCCCGTCGATAATGACTTGGAATGCGGCTTTGTCAGAAATGATAGAATGTGGTGTTGTAGCTGATGTTGATGTTGATGTTGATACTGATGGGTATCTCATTCAAGCTTTTTGTGATGATAACAAGGTTTCGAAAGGTTATGAACTTCTTCGACGGGTTTTGGTAGATGGATTAGTCCCTGGAAAGGCTGCTTTCAATAAATTGATAAGGAGAACCAATATACTAGAAAAGGAAAGGGGCTATAGGGGTTTACGGGTTTTTAATGATCTTAAGGATAGAGGCTATGCTCCAGATATTGCCATGTCTACGACCATGATTCATGGTCTTTGTACAATGGGTTGTCTTGGGGAAGCTAGGAAGCTTTGGTTTGAGATGATTGAGAAGGGATATCGTCCAAACAAGTTCACATACAATACAATGATTCATGGGTTTTGTAAGATTGGTAATTTTGAAAGGGCCAAGATCTTGTACAAGGAGATGTGTGGTGGAGGTCATAAAGAAACCAGAGTCAGTTACAATGCAAAGATGACAGGGCTGTGTTTACATGGAAGGACCGATGAGGCATATCGATTGGAGGGCAAGATAGTAGAAAGTATGAACTTACTCCGAGAGCTCCTGACTCAATGTTTACAGCCATCAGCTTGCTCGTACACCCCACTTATTAAAGGGCTTTGCCAGGTTGTGGCTGTACAAGAAGCAAAAACTTTGTTGAATTATATGAAGAATAGAGATTTAGAACCAAGTGTTGGTACTCATGATGATATCATCATTGGATTGTGTGATCAAGGAGATGCTGCAGACGGATTCAAATGGTTGATAGAAATGTTAAAGAGTAAGCGAAAACCAAAGCGGGAAACTTTTGAGAGACTGGTTGATTCTCTCTCACAAAGAGAGAGGATGGACAGGTTATGCACTGGAAAAAGGCATAGCTGTTCTCTGGTTAATAAGCTTTGTGGGGAGAGTATCCATTTTGTTGAAACATGTCTAGGGAAGATCTTAGAAGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

353

Amino Acids

39.78

Weight (kDa)

8.48

Isoelectric Point (pI)

34.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18950
fragaria_vesca	FvH4_4g14110 FvH4_4g14110
malus_domestica	MD02G1277500.v1.1
prunus_persica	Prupe.1G570100_v2.0.a1 Prupe.3G113000_v2.0.a1 Prupe.3G113000_v2.0.a1
pyrus_communis	pycom12g09540
rosa_chinensis	RchiOBHm_Chr4g0419111 RchiOBHm_Chr4g0419121
rosa_laevigata	RLG00000007826
rosa_multiflora	Rmu_sc0000913.1_g000015 Rmu_sc0011831.1_g000001
rosa_roxburghii	Rroxscaffold_5G00362180
rosa_rugosa	Rorug04G0157100
rosa_samantha	Rh4AG218700 Rh4AG218800 Rh4BG220200 Rh4BG220300 Rh4CG230900 Rh4CG231000 Rh4DG217700 Rh4DG217800
rosa_wichuraiana	Rw4G018690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	730, 794
AccI	GTMKAC	1 cut(s)	353
AciI	CCGC	2 cut(s)	74, 898
AcvI	CACGTG	1 cut(s)	21
AfaI	GTAC	5 cut(s)	379, 518, 698, 738, 799
AfiI	CCNNNNNNNGG	3 cut(s)	232, 730, 794
AflII	CTTAAG	1 cut(s)	317
AflIII	ACRYGT	3 cut(s)	18, 20, 1028
AgsI	TTSAA	6 cut(s)	152, 244, 500, 760, 856, 1025
AjnI	CCWGG	2 cut(s)	226, 723
AjuI	GAANNNNNNNTTGG	2 cut(s)	777, 809
AluBI	AGCT	8 cut(s)	110, 155, 401, 409, 661, 689, 978, 997
AluI	AGCT	8 cut(s)	110, 155, 401, 409, 661, 689, 978, 997
Alw21I	GWGCWC	1 cut(s)	663
Alw26I	GTCTC	1 cut(s)	907
AoxI	GGCC	1 cut(s)	504
ApeKI	GCWGC	2 cut(s)	236, 842
Asp700I	GAANNNNTTC	1 cut(s)	195
AspS9I	GGNCC	2 cut(s)	504, 600
AsuII	TTCGAA	1 cut(s)	179
AvaII	GGWCC	1 cut(s)	600
BaeGI	GKGCMC	1 cut(s)	53
BanII	GRGCYC	1 cut(s)	663
BbrPI	CACGTG	1 cut(s)	21
Bbv12I	GWGCWC	1 cut(s)	663
BbvI	GCAGC	2 cut(s)	223, 829
BccI	CCATC	4 cut(s)	131, 209, 691, 940
BciT130I	CCWGG	2 cut(s)	228, 725
BciVI	GTATCC	1 cut(s)	1022
BclI	TGATCA	1 cut(s)	829
BcoDI	GTCTC	1 cut(s)	907
BfaI	CTAG	3 cut(s)	272, 402, 1034
BfmI	CTRYAG	2 cut(s)	289, 843
BfrI	CTTAAG	1 cut(s)	317
BfuI	GTATCC	1 cut(s)	1022
BglII	AGATCT	2 cut(s)	510, 1041
BisI	GCNGC	3 cut(s)	75, 237, 843
BlsI	GCNGC	3 cut(s)	76, 238, 844
Bme1390I	CCNGG	2 cut(s)	228, 725
Bme18I	GGWCC	1 cut(s)	600
BmgT120I	GGNCC	2 cut(s)	504, 600
BmrFI	CCNGG	2 cut(s)	228, 725
BmsI	GCATC	1 cut(s)	829
BoxI	GACNNNNGTC	1 cut(s)	21
BpmI	CTGGAG	1 cut(s)	321
Bpu14I	TTCGAA	1 cut(s)	179
Bsa29I	ATCGAT	1 cut(s)	616
BsaAI	YACGTR	1 cut(s)	21
BsaBI	GATNNNNATC	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	3 cut(s)	232, 730, 794
Bse1I	ACTGG	2 cut(s)	921, 967
Bse8I	GATNNNNATC	1 cut(s)	141
BseBI	CCWGG	2 cut(s)	228, 725
BseCI	ATCGAT	1 cut(s)	616
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	1 cut(s)	951
BseJI	GATNNNNATC	1 cut(s)	141
BseLI	CCNNNNNNNGG	3 cut(s)	232, 730, 794
BseNI	ACTGG	2 cut(s)	921, 967
BseSI	GKGCMC	1 cut(s)	53
BseXI	GCAGC	2 cut(s)	223, 829
BshFI	GGCC	1 cut(s)	506
BshVI	ATCGAT	1 cut(s)	616
BsiHKAI	GWGCWC	1 cut(s)	663
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	3 cut(s)	232, 730, 794
BsmAI	GTCTC	1 cut(s)	907
BsmFI	GGGAC	1 cut(s)	209
BsmI	GAATGC	1 cut(s)	76
BsnI	GGCC	1 cut(s)	506
Bsp119I	TTCGAA	1 cut(s)	179
Bsp1286I	GDGCHC	2 cut(s)	53, 663
Bsp1407I	TGTACA	3 cut(s)	377, 516, 736
Bsp143I	GATC	4 cut(s)	313, 510, 829, 1041
BspACI	CCGC	2 cut(s)	74, 898
BspANI	GGCC	1 cut(s)	506
BspDI	ATCGAT	1 cut(s)	616
BspHI	TCATGA	1 cut(s)	802
BspMAI	CTGCAG	1 cut(s)	847
BspT104I	TTCGAA	1 cut(s)	179
BspTI	CTTAAG	1 cut(s)	317
BsrGI	TGTACA	3 cut(s)	377, 516, 736
BsrI	ACTGG	2 cut(s)	921, 967
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	4 cut(s)	313, 510, 829, 1041
Bst2UI	CCWGG	2 cut(s)	228, 725
BstAFI	CTTAAG	1 cut(s)	317
BstAUI	TGTACA	3 cut(s)	377, 516, 736
BstBAI	YACGTR	1 cut(s)	21
BstBI	TTCGAA	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	691
BstDEI	CTNAG	1 cut(s)	1045
BstF5I	GGATG	1 cut(s)	951
BstKTI	GATC	4 cut(s)	316, 513, 832, 1044
BstMAI	GTCTC	1 cut(s)	907
BstMBI	GATC	4 cut(s)	313, 510, 829, 1041
BstNI	CCWGG	2 cut(s)	228, 725
BstNSI	RCATGY	1 cut(s)	1032
BstPAI	GACNNNNGTC	1 cut(s)	21
BstSCI	CCNGG	2 cut(s)	226, 723
BstSFI	CTRYAG	2 cut(s)	289, 843
BstSLI	GKGCMC	1 cut(s)	53
BstV1I	GCAGC	2 cut(s)	223, 829
BstX2I	RGATCY	2 cut(s)	510, 1041
BstYI	RGATCY	2 cut(s)	510, 1041
Bsu15I	ATCGAT	1 cut(s)	616
BsuI	GTATCC	1 cut(s)	1022
BsuRI	GGCC	1 cut(s)	506
BsuTUI	ATCGAT	1 cut(s)	616
BtsCI	GGATG	1 cut(s)	951
BtsIMutI	CAGTG	1 cut(s)	960
Cac8I	GCNNGC	1 cut(s)	691
CciI	TCATGA	1 cut(s)	802
Cfr13I	GGNCC	2 cut(s)	504, 600
ClaI	ATCGAT	1 cut(s)	616
Csp6I	GTAC	5 cut(s)	378, 517, 697, 737, 798
CviAII	CATG	8 cut(s)	26, 349, 361, 368, 473, 593, 803, 1029
CviQI	GTAC	5 cut(s)	378, 517, 697, 737, 798
DdeI	CTNAG	1 cut(s)	1045
DpnI	GATC	4 cut(s)	315, 512, 831, 1043
DpnII	GATC	4 cut(s)	313, 510, 829, 1041
DraI	TTTAAA	1 cut(s)	34
Ecl136II	GAGCTC	1 cut(s)	661
Eco24I	GRGCYC	1 cut(s)	663
Eco32I	GATATC	2 cut(s)	437, 811
Eco47I	GGWCC	1 cut(s)	600
Eco53kI	GAGCTC	1 cut(s)	661
Eco72I	CACGTG	1 cut(s)	21
EcoICRI	GAGCTC	1 cut(s)	661
EcoRII	CCWGG	2 cut(s)	226, 723
EcoRV	GATATC	2 cut(s)	437, 811
EcoT38I	GRGCYC	1 cut(s)	663
FaeI	CATG	8 cut(s)	29, 352, 364, 371, 476, 596, 806, 1032
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	8 cut(s)	25, 348, 360, 367, 472, 592, 802, 1028
FauI	CCCGC	1 cut(s)	891
FbaI	TGATCA	1 cut(s)	829
FblI	GTMKAC	1 cut(s)	353
Fnu4HI	GCNGC	3 cut(s)	75, 237, 843
FokI	GGATG	1 cut(s)	958
FriOI	GRGCYC	1 cut(s)	663
Fsp4HI	GCNGC	3 cut(s)	75, 237, 843
FspBI	CTAG	3 cut(s)	272, 402, 1034
GluI	GCNGC	3 cut(s)	75, 237, 843
GsuI	CTGGAG	1 cut(s)	321
HaeIII	GGCC	1 cut(s)	506
Hin1II	CATG	8 cut(s)	29, 352, 364, 371, 476, 596, 806, 1032
HindIII	AAGCTT	3 cut(s)	153, 407, 995
HinfI	GANTC	6 cut(s)	364, 469, 555, 667, 852, 923
Hpy166II	GTNNAC	6 cut(s)	299, 354, 453, 590, 677, 699
Hpy188I	TCNGA	2 cut(s)	85, 656
Hpy188III	TCNNGA	3 cut(s)	338, 664, 803
Hpy8I	GTNNAC	6 cut(s)	299, 354, 453, 590, 677, 699
Hpy99I	CGWCG	2 cut(s)	58, 204
HpyAV	CCTTC	3 cut(s)	424, 591, 1043
HpyCH4IV	ACGT	1 cut(s)	20
HpyCH4V	TGCA	3 cut(s)	569, 845, 960
HpyF3I	CTNAG	1 cut(s)	1045
HpySE526I	ACGT	1 cut(s)	20
Hsp92II	CATG	8 cut(s)	29, 352, 364, 371, 476, 596, 806, 1032
Ksp22I	TGATCA	1 cut(s)	829
Kzo9I	GATC	4 cut(s)	313, 510, 829, 1041
LmnI	GCTCC	2 cut(s)	340, 666
Lsp1109I	GCAGC	2 cut(s)	223, 829
LweI	GCATC	1 cut(s)	829
MaeI	CTAG	3 cut(s)	272, 402, 1034
MaeII	ACGT	1 cut(s)	20
MaeIII	GTNAC	1 cut(s)	560
MalI	GATC	4 cut(s)	315, 512, 831, 1043
MboI	GATC	4 cut(s)	313, 510, 829, 1041
MboII	GAAGA	3 cut(s)	188, 781, 1051
MflI	RGATCY	2 cut(s)	510, 1041
MhlI	GDGCHC	2 cut(s)	53, 663
MluCI	AATT	3 cut(s)	248, 493, 760
MlyI	GAGTC	2 cut(s)	564, 661
MnlI	CCTC	5 cut(s)	320, 530, 601, 616, 936
MroXI	GAANNNNTTC	1 cut(s)	195
MseI	TTAA	6 cut(s)	33, 309, 318, 711, 875, 990
MspCI	CTTAAG	1 cut(s)	317
MspR9I	CCNGG	2 cut(s)	228, 725
Mva1269I	GAATGC	1 cut(s)	76
MvaI	CCWGG	2 cut(s)	228, 725
NdeII	GATC	4 cut(s)	313, 510, 829, 1041
NlaIII	CATG	8 cut(s)	29, 352, 364, 371, 476, 596, 806, 1032
NspI	RCATGY	1 cut(s)	1032
NspV	TTCGAA	1 cut(s)	179
PagI	TCATGA	1 cut(s)	802
PciI	ACATGT	1 cut(s)	1028
PctI	GAATGC	1 cut(s)	76
PdmI	GAANNNNTTC	1 cut(s)	195
PfeI	GAWTC	4 cut(s)	364, 469, 852, 923
PflMI	CCANNNNNTGG	2 cut(s)	730, 794
PkrI	GCNGC	3 cut(s)	76, 238, 844
PleI	GAGTC	2 cut(s)	563, 661
PmaCI	CACGTG	1 cut(s)	21
PmlI	CACGTG	1 cut(s)	21
PpsI	GAGTC	2 cut(s)	563, 661
Ppu21I	YACGTR	1 cut(s)	21
PscI	ACATGT	1 cut(s)	1028
PshAI	GACNNNNGTC	1 cut(s)	21
Psp124BI	GAGCTC	1 cut(s)	663
Psp6I	CCWGG	2 cut(s)	226, 723
PspCI	CACGTG	1 cut(s)	21
PspGI	CCWGG	2 cut(s)	226, 723
PspPI	GGNCC	2 cut(s)	504, 600
PstI	CTGCAG	1 cut(s)	847
PsuI	RGATCY	2 cut(s)	510, 1041
RsaI	GTAC	5 cut(s)	379, 518, 698, 738, 799
RsaNI	GTAC	5 cut(s)	378, 517, 697, 737, 798
SacI	GAGCTC	1 cut(s)	663
SaqAI	TTAA	6 cut(s)	33, 309, 318, 711, 875, 990
SatI	GCNGC	3 cut(s)	75, 237, 843
Sau3AI	GATC	4 cut(s)	313, 510, 829, 1041
Sau96I	GGNCC	2 cut(s)	504, 600
SchI	GAGTC	2 cut(s)	564, 661
ScrFI	CCNGG	2 cut(s)	228, 725
SduI	GDGCHC	2 cut(s)	53, 663
SfaNI	GCATC	1 cut(s)	829
SfcI	CTRYAG	2 cut(s)	289, 843
SfuI	TTCGAA	1 cut(s)	179
SinI	GGWCC	1 cut(s)	600
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	3 cut(s)	248, 493, 760
SsiI	CCGC	2 cut(s)	74, 898
SspMI	CTAG	3 cut(s)	272, 402, 1034
SstI	GAGCTC	1 cut(s)	663
StyD4I	CCNGG	2 cut(s)	226, 723
TaiI	ACGT	1 cut(s)	23
TaqI	TCGA	4 cut(s)	56, 179, 199, 616
TaqII	GACCGA	1 cut(s)	617
TasI	AATT	3 cut(s)	248, 493, 760
TatI	WGTACW	3 cut(s)	377, 516, 736
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	4 cut(s)	364, 469, 852, 923
Tru1I	TTAA	6 cut(s)	33, 309, 318, 711, 875, 990
Tru9I	TTAA	6 cut(s)	33, 309, 318, 711, 875, 990
TscAI	CASTG	1 cut(s)	967
TseI	GCWGC	2 cut(s)	236, 842
TspDTI	ATGAA	5 cut(s)	204, 356, 461, 659, 782
TspGWI	ACGGA	1 cut(s)	864
TspRI	CASTG	1 cut(s)	967
Van91I	CCANNNNNTGG	2 cut(s)	730, 794
Vha464I	CTTAAG	1 cut(s)	317
VpaK11BI	GGWCC	1 cut(s)	600
XceI	RCATGY	1 cut(s)	1032
XmiI	GTMKAC	1 cut(s)	353
XmnI	GAANNNNTTC	1 cut(s)	195
XspI	CTAG	3 cut(s)	272, 402, 1034

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.