Rroxscaffold_5G00362180

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
43046647 .. 43048886
2240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00362180.1

Sequence Viewer

Length: 1428 bp
ATGGCCAGAGCTTCATCTTCAATCTTAATATTCCTCCGCCAAAACCCTTGTGCTCTCACAAAACCCAATACCCAAATCCGATACCTTACCGTAGAAACCAAAGATTGTGACTTTACACAAGTTGCCCAACAGATTTGTGAGATCATAAGAACAAAACCCAGATGGGAGAACACTCTGTCCTCTGAGTACCCTTCTTTAAATTTCTCTGATCCTCGGTTTATCCGTGAGGTTTTGAAGCAGCAGAGCAGCGTGCTACTTTCGGTTCGGTTCTTCTTGTGGTTGAGCTCTCGAAAAGGGTTTTCGCCTGACCCCATTTCGTGTAATGCGGTTTTCAATGCTCTTGTGGAGGCTAAGGCCTGCAGTGCAGCACAATCTTTTCTTAAGTCTACGGGTTTTAGCCCCGAGCCGGTTTCATTGGAAAGTTATGCTCGGTGTCTTTGGGAGGCTGGGAGGATTAAGGAAGCCTGTGATGTGTTTGAGAGGTTGAAAGGGGCTGGAGTGTGTCCGTCGATTGGGACTTGGAATGCGGCTTTGTCAGGGTGCCTGAAGGCTAAGAGGACAGATATGGTTTGGAAGTTGTATCAAGAAATGATGGAATATGGTGTTGTAGCTGATGTTGAGACTGTTGGGTGTCTCATTCGAGGATTTTGTGATGATAATGAGGTATTCAAAGGTTATGGACTTCTTAGTCAGGTTTTGGAAGATGGAGTAGTCCCTGGAAAAGCTGCTTTCAATCGGTTGATATCTGAGTTTTGTAAGGAGAAGGAATATACTAAAGTGTCTGAACTCCTCCATACAATGATAGTGATGAACTGTGCTCCCGATAATTTTACTTATCAGGAGGTAATCAATTGGTTGTGCAAGAAAGGAAGGCCATATGAGGGTTTTCGGATTTTCAATGATCTTAAGTATAGAGGCTATGCTCCTGATATTGTCATGTACACAACCATGATTCATGGTCTTTGTACGATGGGTTGGCTTGGAGAAGCTAGGAAGCTATGGTTTGAGATGATTGATAAGGGATTTCATCCAAGCAAGTACACTTACAACACCCTAATTCATGGGTTTTGCAAGCGTGGAATTTTAGAACAGGCCCAGATGTGCAGGGAGATGTGTGATAAGGGATTTCATCCAAGCAAGTACACTAACAATACCATGATTCATGGGTTTTGTAAGAGTGGAAATTTAGAACAGGCCTGGATCTTGTGCAAGGAGATGGGTGATAAGGGATTTCGTCCAACCAAGTACATTTACGATATCATGATTCATGGGTTTTGTAAGAGTGGAAATTTCGAACAGGCCAGGATCATTTGCAAGGAGATGTGTGATAAAGGTTATATGGAAACCACAATCAATCGCAACGCAATGATGACAGGGCTTTGTTTACATGGAAGGACCGGTCAGGCATATAAGCTGTTTAAAAAATAG

Protein Analysis

475

Amino Acids

54.24

Weight (kDa)

8.72

Isoelectric Point (pI)

30.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 169 - 218 3.2e-11 PPR repeat family
PPR_2 PF13041 242 - 288 2.2e-09 PPR repeat family
PPR_2 PF13041 282 - 322 5.3e-10 PPR repeat family
PPR_3 PF13812 297 - 356 1.2e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 305 - 337 8.4e-09 PPR repeat
PPR_2 PF13041 309 - 358 1.7e-16 PPR repeat family
PPR PF01535 312 - 342 2.6e-07 PPR repeat
PPR_1 PF12854 340 - 366 1.6e-08 PPR repeat
PPR_2 PF13041 348 - 392 1.5e-11 PPR repeat family
PPR_1 PF12854 374 - 406 9.8e-08 PPR repeat
PPR_2 PF13041 382 - 427 1.6e-13 PPR repeat family
PPR PF01535 384 - 411 9.5e-06 PPR repeat
PPR_1 PF12854 409 - 441 3.5e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 687
AccB1I GGYRCC 1 cut(s) 540
AccI GTMKAC 1 cut(s) 386
AciI CCGC 3 cut(s) 37, 326, 527
AclWI GGATC 3 cut(s) 203, 1208, 1313
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 4 cut(s) 199, 1080, 1183, 1288
AcuI CTGAAG 1 cut(s) 566
AfaI GTAC 6 cut(s) 188, 941, 967, 1040, 1142, 1247
AfiI CCNNNNNNNGG 3 cut(s) 406, 512, 881
AflII CTTAAG 2 cut(s) 380, 905
AgeI ACCGGT 1 cut(s) 1397
AgsI TTSAA 7 cut(s) 21, 235, 334, 487, 670, 733, 898
AjnI CCWGG 3 cut(s) 715, 1196, 1301
AloI GAACNNNNNNTCC 2 cut(s) 161, 193
AluBI AGCT 7 cut(s) 11, 285, 611, 725, 989, 997, 1414
AluI AGCT 7 cut(s) 11, 285, 611, 725, 989, 997, 1414
Alw21I GWGCWC 3 cut(s) 55, 287, 820
Alw26I GTCTC 2 cut(s) 614, 638
AlwI GGATC 3 cut(s) 203, 1208, 1313
Ama87I CYCGRG 1 cut(s) 401
AoxI GGCC 6 cut(s) 3, 354, 872, 1092, 1194, 1299
ApeKI GCWGC 4 cut(s) 238, 246, 365, 725
ApoI RAATTY 4 cut(s) 199, 1080, 1183, 1288
AsiGI ACCGGT 1 cut(s) 1397
AspS9I GGNCC 2 cut(s) 1093, 1395
AsuHPI GGTGA 1 cut(s) 1232
AsuII TTCGAA 1 cut(s) 1293
AvaI CYCGRG 1 cut(s) 401
AvaII GGWCC 1 cut(s) 1395
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 540
BanII GRGCYC 1 cut(s) 287
Bbv12I GWGCWC 3 cut(s) 55, 287, 820
BbvI GCAGC 4 cut(s) 250, 258, 377, 712
BccI CCATC 5 cut(s) 156, 586, 698, 964, 1210
BciT130I CCWGG 3 cut(s) 717, 1198, 1303
BcoDI GTCTC 2 cut(s) 614, 638
BfaI CTAG 1 cut(s) 990
BfmI CTRYAG 1 cut(s) 358
BfrI CTTAAG 2 cut(s) 380, 905
BisI GCNGC 5 cut(s) 239, 247, 366, 528, 726
BlsI GCNGC 5 cut(s) 240, 248, 367, 529, 727
Bme1390I CCNGG 3 cut(s) 717, 1198, 1303
Bme18I GGWCC 1 cut(s) 1395
BmeT110I CYCGRG 1 cut(s) 401
BmgT120I GGNCC 2 cut(s) 1093, 1395
BmiI GGNNCC 1 cut(s) 542
BmrFI CCNGG 3 cut(s) 717, 1198, 1303
BpmI CTGGAG 1 cut(s) 516
Bpu10I CCTNAGC 1 cut(s) 351
Bpu14I TTCGAA 1 cut(s) 1293
BsaJI CCNNGG 2 cut(s) 212, 715
BsaWI WCCGGW 1 cut(s) 1397
Bsc4I CCNNNNNNNGG 3 cut(s) 406, 512, 881
Bse118I RCCGGY 2 cut(s) 406, 1397
Bse3DI GCAATG 1 cut(s) 1371
BseBI CCWGG 3 cut(s) 717, 1198, 1303
BseDI CCNNGG 2 cut(s) 212, 715
BseGI GGATG 2 cut(s) 1027, 1129
BseLI CCNNNNNNNGG 3 cut(s) 406, 512, 881
BseMI GCAATG 1 cut(s) 1371
BseMII CTCAG 2 cut(s) 174, 738
BseRI GAGGAG 1 cut(s) 779
BseXI GCAGC 4 cut(s) 250, 258, 377, 712
BseYI CCCAGC 1 cut(s) 446
BsgI GTGCAG 2 cut(s) 384, 1123
BshFI GGCC 6 cut(s) 5, 356, 874, 1094, 1196, 1301
BshNI GGYRCC 1 cut(s) 540
BshTI ACCGGT 1 cut(s) 1397
BsiHKAI GWGCWC 3 cut(s) 55, 287, 820
BsiHKCI CYCGRG 1 cut(s) 401
BsiSI CCGG 2 cut(s) 407, 1398
BslFI GGGAC 2 cut(s) 529, 698
BslI CCNNNNNNNGG 3 cut(s) 406, 512, 881
BsmAI GTCTC 2 cut(s) 614, 638
BsmFI GGGAC 2 cut(s) 529, 698
BsmI GAATGC 1 cut(s) 529
BsnI GGCC 6 cut(s) 5, 356, 874, 1094, 1196, 1301
BsoBI CYCGRG 1 cut(s) 401
Bsp119I TTCGAA 1 cut(s) 1293
Bsp1286I GDGCHC 3 cut(s) 55, 287, 820
Bsp1407I TGTACA 1 cut(s) 939
Bsp143I GATC 5 cut(s) 141, 208, 901, 1200, 1305
BspACI CCGC 3 cut(s) 37, 326, 527
BspANI GGCC 6 cut(s) 5, 356, 874, 1094, 1196, 1301
BspCNI CTCAG 2 cut(s) 175, 739
BspHI TCATGA 1 cut(s) 1260
BspLI GGNNCC 1 cut(s) 542
BspMAI CTGCAG 1 cut(s) 362
BspPI GGATC 3 cut(s) 203, 1208, 1313
BspT104I TTCGAA 1 cut(s) 1293
BspT107I GGYRCC 1 cut(s) 540
BspTI CTTAAG 2 cut(s) 380, 905
BsrDI GCAATG 1 cut(s) 1371
BsrFI RCCGGY 2 cut(s) 406, 1397
BsrGI TGTACA 1 cut(s) 939
BssAI RCCGGY 2 cut(s) 406, 1397
BssECI CCNNGG 2 cut(s) 212, 715
BssMI GATC 5 cut(s) 141, 208, 901, 1200, 1305
Bst2UI CCWGG 3 cut(s) 717, 1198, 1303
Bst4CI ACNGT 3 cut(s) 91, 625, 815
BstAFI CTTAAG 2 cut(s) 380, 905
BstAUI TGTACA 1 cut(s) 939
BstBI TTCGAA 1 cut(s) 1293
BstC8I GCNNGC 3 cut(s) 251, 358, 1073
BstDEI CTNAG 5 cut(s) 183, 351, 552, 686, 747
BstF5I GGATG 2 cut(s) 1027, 1129
BstKTI GATC 5 cut(s) 144, 211, 904, 1203, 1308
BstMAI GTCTC 2 cut(s) 614, 638
BstMBI GATC 5 cut(s) 141, 208, 901, 1200, 1305
BstMWI GCNNNNNNNGC 1 cut(s) 362
BstNI CCWGG 3 cut(s) 717, 1198, 1303
BstSCI CCNGG 3 cut(s) 715, 1196, 1301
BstSFI CTRYAG 1 cut(s) 358
BstV1I GCAGC 4 cut(s) 250, 258, 377, 712
BstX2I RGATCY 1 cut(s) 1200
BstYI RGATCY 1 cut(s) 1200
BsuRI GGCC 6 cut(s) 5, 356, 874, 1094, 1196, 1301
BtsCI GGATG 2 cut(s) 1027, 1129
BtsI GCAGTG 1 cut(s) 367
BtsIMutI CAGTG 1 cut(s) 367
Cac8I GCNNGC 3 cut(s) 251, 358, 1073
CciI TCATGA 1 cut(s) 1260
Cfr10I RCCGGY 2 cut(s) 406, 1397
Cfr13I GGNCC 2 cut(s) 1093, 1395
Csp6I GTAC 6 cut(s) 187, 940, 966, 1039, 1141, 1246
CspAI ACCGGT 1 cut(s) 1397
CviAII CATG 9 cut(s) 937, 949, 956, 1061, 1156, 1163, 1261, 1268, 1388
CviQI GTAC 6 cut(s) 187, 940, 966, 1039, 1141, 1246
DdeI CTNAG 5 cut(s) 183, 351, 552, 686, 747
DpnI GATC 5 cut(s) 143, 210, 903, 1202, 1307
DpnII GATC 5 cut(s) 141, 208, 901, 1200, 1305
DraI TTTAAA 2 cut(s) 198, 1420
DrdI GACNNNNNNGTC 1 cut(s) 687
DseDI GACNNNNNNGTC 1 cut(s) 687
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 26
Ecl136II GAGCTC 1 cut(s) 285
Eco147I AGGCCT 2 cut(s) 356, 1196
Eco24I GRGCYC 1 cut(s) 287
Eco32I GATATC 2 cut(s) 744, 1258
Eco47I GGWCC 1 cut(s) 1395
Eco53kI GAGCTC 1 cut(s) 285
Eco57I CTGAAG 1 cut(s) 566
Eco88I CYCGRG 1 cut(s) 401
EcoICRI GAGCTC 1 cut(s) 285
EcoRII CCWGG 3 cut(s) 715, 1196, 1301
EcoRV GATATC 2 cut(s) 744, 1258
EcoT38I GRGCYC 1 cut(s) 287
FaeI CATG 9 cut(s) 940, 952, 959, 1064, 1159, 1166, 1264, 1271, 1391
FaqI GGGAC 2 cut(s) 529, 698
FatI CATG 9 cut(s) 936, 948, 955, 1060, 1155, 1162, 1260, 1267, 1387
FauNDI CATATG 1 cut(s) 877
FblI GTMKAC 1 cut(s) 386
Fnu4HI GCNGC 5 cut(s) 239, 247, 366, 528, 726
FokI GGATG 2 cut(s) 1014, 1116
FriOI GRGCYC 1 cut(s) 287
Fsp4HI GCNGC 5 cut(s) 239, 247, 366, 528, 726
FspBI CTAG 1 cut(s) 990
GluI GCNGC 5 cut(s) 239, 247, 366, 528, 726
GsaI CCCAGC 1 cut(s) 450
GsuI CTGGAG 1 cut(s) 516
HaeIII GGCC 6 cut(s) 5, 356, 874, 1094, 1196, 1301
HapII CCGG 2 cut(s) 407, 1398
Hin1II CATG 9 cut(s) 940, 952, 959, 1064, 1159, 1166, 1264, 1271, 1391
HinfI GANTC 3 cut(s) 952, 1159, 1264
HpaII CCGG 2 cut(s) 407, 1398
HphI GGTGA 1 cut(s) 1232
Hpy166II GTNNAC 5 cut(s) 387, 942, 1041, 1143, 1385
Hpy188I TCNGA 6 cut(s) 80, 184, 208, 748, 784, 891
Hpy188III TCNNGA 6 cut(s) 288, 584, 821, 839, 926, 1261
Hpy8I GTNNAC 5 cut(s) 387, 942, 1041, 1143, 1385
Hpy99I CGWCG 1 cut(s) 511
HpyAV CCTTC 5 cut(s) 201, 541, 757, 864, 1386
HpyCH4III ACNGT 3 cut(s) 91, 625, 815
HpyCH4V TGCA 7 cut(s) 360, 365, 861, 1071, 1104, 1209, 1314
HpyF10VI GCNNNNNNNGC 1 cut(s) 362
HpyF3I CTNAG 5 cut(s) 183, 351, 552, 686, 747
Hsp92II CATG 9 cut(s) 940, 952, 959, 1064, 1159, 1166, 1264, 1271, 1391
Kzo9I GATC 5 cut(s) 141, 208, 901, 1200, 1305
LmnI GCTCC 2 cut(s) 823, 928
Lsp1109I GCAGC 4 cut(s) 250, 258, 377, 712
MaeI CTAG 1 cut(s) 990
MaeIII GTNAC 1 cut(s) 107
MalI GATC 5 cut(s) 143, 210, 903, 1202, 1307
MboI GATC 5 cut(s) 141, 208, 901, 1200, 1305
MboII GAAGA 3 cut(s) 9, 262, 713
MfeI CAATTG 1 cut(s) 850
MflI RGATCY 1 cut(s) 1200
MhlI GDGCHC 3 cut(s) 55, 287, 820
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 7 cut(s) 199, 826, 850, 1056, 1080, 1183, 1288
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 1262
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 6 cut(s) 26, 197, 381, 456, 906, 1419
MslI CAYNNNNRTG 1 cut(s) 947
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 2 cut(s) 380, 905
MspI CCGG 2 cut(s) 407, 1398
MspR9I CCNGG 3 cut(s) 717, 1198, 1303
MunI CAATTG 1 cut(s) 850
Mva1269I GAATGC 1 cut(s) 529
MvaI CCWGG 3 cut(s) 717, 1198, 1303
MwoI GCNNNNNNNGC 1 cut(s) 362
NdeI CATATG 1 cut(s) 877
NdeII GATC 5 cut(s) 141, 208, 901, 1200, 1305
NlaIII CATG 9 cut(s) 940, 952, 959, 1064, 1159, 1166, 1264, 1271, 1391
NlaIV GGNNCC 1 cut(s) 542
NmuCI GTSAC 1 cut(s) 107
NspV TTCGAA 1 cut(s) 1293
PagI TCATGA 1 cut(s) 1260
PceI AGGCCT 2 cut(s) 356, 1196
PcsI WCGNNNNNNNCGW 1 cut(s) 220
PctI GAATGC 1 cut(s) 529
PfeI GAWTC 3 cut(s) 952, 1159, 1264
PinAI ACCGGT 1 cut(s) 1397
PkrI GCNGC 5 cut(s) 240, 248, 367, 529, 727
Psp124BI GAGCTC 1 cut(s) 287
Psp6I CCWGG 3 cut(s) 715, 1196, 1301
PspFI CCCAGC 1 cut(s) 446
PspGI CCWGG 3 cut(s) 715, 1196, 1301
PspN4I GGNNCC 1 cut(s) 542
PspPI GGNCC 2 cut(s) 1093, 1395
PstI CTGCAG 1 cut(s) 362
PsuI RGATCY 1 cut(s) 1200
RsaI GTAC 6 cut(s) 188, 941, 967, 1040, 1142, 1247
RsaNI GTAC 6 cut(s) 187, 940, 966, 1039, 1141, 1246
RseI CAYNNNNRTG 1 cut(s) 947
SacI GAGCTC 1 cut(s) 287
SaqAI TTAA 6 cut(s) 26, 197, 381, 456, 906, 1419
SatI GCNGC 5 cut(s) 239, 247, 366, 528, 726
Sau3AI GATC 5 cut(s) 141, 208, 901, 1200, 1305
Sau96I GGNCC 2 cut(s) 1093, 1395
ScrFI CCNGG 3 cut(s) 717, 1198, 1303
SduI GDGCHC 3 cut(s) 55, 287, 820
SfcI CTRYAG 1 cut(s) 358
SfuI TTCGAA 1 cut(s) 1293
SinI GGWCC 1 cut(s) 1395
SmiMI CAYNNNNRTG 1 cut(s) 947
SmlI CTYRAG 2 cut(s) 380, 905
SmoI CTYRAG 2 cut(s) 380, 905
Sse9I AATT 7 cut(s) 199, 826, 850, 1056, 1080, 1183, 1288
SseBI AGGCCT 2 cut(s) 356, 1196
SsiI CCGC 3 cut(s) 37, 326, 527
SspI AATATT 1 cut(s) 30
SspMI CTAG 1 cut(s) 990
SstI GAGCTC 1 cut(s) 287
StuI AGGCCT 2 cut(s) 356, 1196
StyD4I CCNGG 3 cut(s) 715, 1196, 1301
TaaI ACNGT 3 cut(s) 91, 625, 815
TaqI TCGA 4 cut(s) 289, 509, 640, 1293
TasI AATT 7 cut(s) 199, 826, 850, 1056, 1080, 1183, 1288
TatI WGTACW 4 cut(s) 939, 1038, 1140, 1245
TauI GCSGC 1 cut(s) 530
TfiI GAWTC 3 cut(s) 952, 1159, 1264
Tru1I TTAA 6 cut(s) 26, 197, 381, 456, 906, 1419
Tru9I TTAA 6 cut(s) 26, 197, 381, 456, 906, 1419
TscAI CASTG 1 cut(s) 367
TseFI GTSAC 1 cut(s) 107
TseI GCWGC 4 cut(s) 238, 246, 365, 725
Tsp45I GTSAC 1 cut(s) 107
TspDTI ATGAA 8 cut(s) 402, 824, 944, 1016, 1049, 1118, 1151, 1256
TspGWI ACGGA 2 cut(s) 212, 495
TspRI CASTG 1 cut(s) 367
Vha464I CTTAAG 2 cut(s) 380, 905
VpaK11BI GGWCC 1 cut(s) 1395
XapI RAATTY 4 cut(s) 199, 1080, 1183, 1288
XmiI GTMKAC 1 cut(s) 386
XspI CTAG 1 cut(s) 990
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.