FvH4_4g14720

Staphylococcal nuclease domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0018417
Physical Location & Seq
Reverse (-)
18381112 .. 18383742
2631 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g14720.t1

Sequence Viewer

Length: 2631 bp
ATGGCATCACAATCTTGGTATAGAGGCAGAGTCAAGGCTGTTCCTTCAGGTGATTGCCTTGTCATCCAGGCCCTTCGGCCAAACAATACCGGAATCCCATCGGAAAGAGTTATAACTTTGTCATCGGTTCGTGCTCCCAAACTAGCCGGTAAAGATCGCAGCGCTGACGAGCCTTTTGCATGGGACAGCAGAGAGTATCTGAGGAAGCTCTGCCTCGGAAAGGAGGTGGTTTACTGCATTGATTCCGTTGAAGAACCGCTGGGATTGGTCGGTACTGTCTTCCTTGGTAACGATAATGTTGCAGCCCTTGTTGTTCAAAAAGGGTGGGCATCTGTAACGTTGCCGAGCACAACTCCTTACTATGTTGAGCTGCAGTTTCACATGGACCAAGCCTTTAATAAAGGTCTCGGTCTCTGGAGCAAGGCTCCTGGTGCGGCGGAGGCATCCATTAGAACTCTACCTCCCCAACTCAACTTAGAGACCACCAAGACTCTTTTGGCTGCAAACAAGGGCAAGCGTGTAGAAGCTATCGTCGAGCATGTTTGTGATGGCAGTACAGTTCTGGCTCATTTGCTTCCGGAGTTTCAGTTTGTCCTAGTAATTGTTTCAGGAACTCAGGCGCCCTACGTTGGACGTAATGCTTATCCTTTTGCATCAGAAGCGAAGCTTTTCACAGAGTCTCGTGTGTTGAATAGAGATGTGCATATTGTCTTGGAGGGTGTCGACAAATTCAGCCGTCTGATTGGTTCTGTGTATTACGGAGACTCTGAGAGGGACTTGGGGCTGGAGCTTGTGGAGAATGGTTATGCTAAATTTGTACAATGGAGCGCAAAAGTTATGGATGAAGATGCAAAGCAGCAGCTCAAGACTGCAGAGCTTGAAGCTAAGAAGAGCAAGCGGAGGATTTGGACAAACTTTGTACCCCCAGCTACAAATTCCAAGCCAATTCATGACCAGAATTTCACTGGAACAGTTGTGGAGGTTGTAAGTGGGGAATGTGTCATTGTGGCGGATGATTCTAGAGAGCGGAGAGTTAGCCTTTCGAGTATTCAGTGTCCGAAGATGGGACGGAGAGGTGATGAGCCGGCGGCCTATGCACGTGAAGCCAAGGAGATGCTGAGGACACGCCTTATTGGACGCCAAGTGAATGTTCAAATGGAGTATTCCAGGAAGTTCGGCCAAGCAGATTTGGAGTCTTCTAGAGTAATAGATTTCGGATCAGTCTTTGTTAAGGCTGACGGAGAAGATGAAAGAAACCAGGCTGAGGTAAACGTTGCTGAGCTTCTGGTTGAATGTGGTTTCGGTACCGTTATCAAACATAAAGAGTATGATGAGAGATCAAGATACTATGATGCCCTACTTGCTGCCGAAACATGTGCTATTGCTGAAAAGAAAGGACTCCATTCTTCAAAGAAGGCCCCCGTTGTGCACATGACAGACTTGACAATGGCAACGGCCTACGAAGCAGGAGACGTCTTGCCGTCCTTGCAGCGAACTAGGAGAGTGTCTGCAGTTGTGGAATATGTCTTCAGCGGTCATCGTTTTAAACTCTACATTCCCAAGGAGACGTGCATCATCTTCTTTTCTCTCTCCGGTGTGAGATGTCCTAGTCGTGGTGAGCCCTATTCGGACGAAGCAATTGCCGTCATGAGGCGAAGATTAATGCAGAGAGATGTTGAGATTGAAGTGGAGACTATTGATAGAAACGGAACTTTCGTGGGAAGTATATGGGAATCTGGGACCAATGTGTCAGTTGCCCTCGTTGAAGCTGGCCTTGCAAAGTATATTCCATTTGGTGGTAGCGATAAGATCCAAGATGGCCATCTCCTAGAACGAGCTATGAAAGATGCAAAAACGAAGAAGCTGAAAATTTGGGAGAATTTTGACGAACAGAAAGAACTAAAGGTAGTGGTCACAGAAGTTCTGGACAGCGGTAAATTTTATGTGAGGACAGTTGGGGACGAGAAGAGTGCCTCTATTCAGCAACAGCTTGCTTCGTTGAACCTTGAAGAAGCTCCTTCTGTAAGTGATGCTTTTAATCCTAAGCAGGGTGACATTGTCCTTGCTCAATATAGTGCAGATAATTCTTGGAACAGAGCTAGGATTGTCAATATGCGAAGGGGCAATTTTAAAGTGTTCTACATTGACTATGGTAATCAAGAGGTTGTCCCTTACAGTCAGTTACGGCCTCTTATTCCTTCTGCTGCCGCTGTACCTGGTCTCGCTCAGCTATGCAGCCTGGCACATGTTATTGTCCCGAGCTTGGAGGAGGAGTTTGGTCAAGAAGCAGGTGAGTATTTGAGCGAGTGCATATTGGACAAAGAGTTCACCGCCGTGATTGAGGGAAGAGATATTTCTGAAGGAAAATTTGCCAAAGGCCAAGGAACCGGACCAGCTCTTATGGTAACTCTTGTCACATCAGATGATGTTGACAGTATAAATGCTACCATGATTCGTAATGGACTTGCTTCTCTAGATAACCAGAAGAAGAGGTCATGGAAGTCTCGTACCTTGAGAGAGTTCCAGCAAGACGCAAAAACCTTCCGCCGAGGGATGTGGCATGATTATTACGAGTCTGATCATCATGAGAAAAAAGCTCCTCCTGCAAGAAAGGCTGCTGGCAGTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000932 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006139 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009057 GO:0009058 GO:0009266 GO:0009408 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009685 GO:0009686 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010035 GO:0010038 GO:0010371 GO:0010372 GO:0010467 GO:0010468 GO:0010494 GO:0010565 GO:0010605 GO:0010629 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016070 GO:0016071 GO:0016101 GO:0016102 GO:0016114 GO:0016787 GO:0016788 GO:0019216 GO:0019222 GO:0019439 GO:0019747 GO:0019752 GO:0030054 GO:0030312 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031967 GO:0031975 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034605 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0043455 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044265 GO:0044270 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046394 GO:0046483 GO:0046686 GO:0046700 GO:0046885 GO:0046886 GO:0046889 GO:0046890 GO:0048518 GO:0048519 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0080090 GO:0090304 GO:0090305 GO:0090351 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko05169 ko05203 map05169 map05203
Pfam Domains
Protein Families
SNase TUDOR

Protein Analysis

877

Amino Acids

97.44

Weight (kDa)

6.47

Isoelectric Point (pI)

39.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNase PF00565 38 - 141 1.4e-09 Staphylococcal nuclease homologue
SNase PF00565 212 - 304 2.1e-15 Staphylococcal nuclease homologue
SNase PF00565 344 - 468 6.9e-08 Staphylococcal nuclease homologue
SNase PF00565 529 - 627 5.4e-15 Staphylococcal nuclease homologue
TUDOR PF00567 630 - 749 4.7e-22 Tudor domain
SNase PF00565 755 - 855 1e-07 Staphylococcal nuclease homologue
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g14720
rosa_chinensis RchiOBHm_Chr6g0309151
rosa_laevigata RLG00000010586
rosa_multiflora Rmu_sc0020102.1_g000004
rosa_rugosa Rorug06G0370100
rosa_samantha Rh6AG482900 Rh6BG492000 Rh6CG496700 Rh6DG483600
rosa_wichuraiana Rw6G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 113
AarI CACCTGC 1 cut(s) 2279
AasI GACNNNNNNGTC 1 cut(s) 1747
AatII GACGTC 1 cut(s) 1476
Acc36I ACCTGC 1 cut(s) 2279
Acc65I GGTACC 1 cut(s) 1304
AccB1I GGYRCC 2 cut(s) 619, 1304
AccB7I CCANNNNNTGG 1 cut(s) 1796
AccBSI CCGCTC 1 cut(s) 1027
AccI GTMKAC 1 cut(s) 723
AccIII TCCGGA 1 cut(s) 577
AclI AACGTT 2 cut(s) 338, 1272
AclWI GGATC 2 cut(s) 1225, 1804
AcoI YGGCCR 3 cut(s) 77, 1177, 1819
AcsI RAATTY 8 cut(s) 728, 812, 934, 958, 1869, 1879, 1937, 2366
AcuI CTGAAG 3 cut(s) 30, 1513, 2379
AcvI CACGTG 1 cut(s) 1100
AcyI GRCGYC 3 cut(s) 620, 1138, 1473
AfaI GTAC 7 cut(s) 274, 556, 819, 921, 1306, 2214, 2509
AfeI AGCGCT 1 cut(s) 163
AfiI CCNNNNNNNGG 9 cut(s) 220, 629, 1064, 1264, 1613, 1650, 1796, 2048, 2263
AflIII ACRYGT 2 cut(s) 1373, 2245
AjiI CACGTC 1 cut(s) 1569
AjnI CCWGG 6 cut(s) 66, 427, 1166, 1257, 2215, 2238
AjuI GAANNNNNNNTTGG 2 cut(s) 1134, 1166
AleI CACNNNNGTG 1 cut(s) 2333
AloI GAACNNNNNNTCC 4 cut(s) 445, 477, 2309, 2341
Alw21I GWGCWC 3 cut(s) 136, 350, 1431
Alw44I GTGCAC 1 cut(s) 1427
AlwI GGATC 2 cut(s) 1225, 1804
Ama87I CYCGRG 1 cut(s) 2257
Aor13HI TCCGGA 1 cut(s) 577
Aor51HI AGCGCT 1 cut(s) 163
ApaLI GTGCAC 1 cut(s) 1427
ApoI RAATTY 8 cut(s) 728, 812, 934, 958, 1869, 1879, 1937, 2366
ArsI GACNNNNNNTTYG 2 cut(s) 158, 190
AseI ATTAAT 1 cut(s) 1661
Asp700I GAANNNNTTC 1 cut(s) 668
Asp718I GGTACC 1 cut(s) 1304
AspLEI GCGC 3 cut(s) 164, 622, 830
AspS9I GGNCC 5 cut(s) 70, 385, 1417, 1740, 2390
AsuHPI GGTGA 6 cut(s) 62, 1088, 1628, 2063, 2303, 2320
AvaI CYCGRG 1 cut(s) 2257
AvaII GGWCC 3 cut(s) 385, 1740, 2390
BaeGI GKGCMC 1 cut(s) 1431
BalI TGGCCA 1 cut(s) 1821
BanI GGYRCC 2 cut(s) 619, 1304
BanII GRGCYC 1 cut(s) 1623
BauI CACGAG 1 cut(s) 681
BbrPI CACGTG 1 cut(s) 1100
BbsI GAAGAC 3 cut(s) 271, 1188, 1519
Bbv12I GWGCWC 3 cut(s) 136, 350, 1431
BbvCI CCTCAGC 2 cut(s) 1118, 1263
BccI CCATC 5 cut(s) 106, 542, 1057, 1811, 1830
BceAI ACGGC 6 cut(s) 720, 1465, 1470, 1628, 2201, 2318
BciT130I CCWGG 6 cut(s) 68, 429, 1168, 1259, 2217, 2240
BclI TGATCA 1 cut(s) 2578
BfaI CTAG 9 cut(s) 143, 596, 1020, 1200, 1497, 1608, 1829, 2100, 2474
BfmI CTRYAG 3 cut(s) 371, 870, 1509
BfoI RGCGCY 2 cut(s) 165, 623
BfuAI ACCTGC 1 cut(s) 2279
BlpI GCTNAGC 2 cut(s) 1278, 2226
Bme1390I CCNGG 6 cut(s) 68, 429, 1168, 1259, 2217, 2240
Bme18I GGWCC 3 cut(s) 385, 1740, 2390
BmeT110I CYCGRG 1 cut(s) 2257
BmgBI CACGTC 1 cut(s) 1569
BmgT120I GGNCC 5 cut(s) 70, 385, 1417, 1740, 2390
BmiI GGNNCC 6 cut(s) 426, 621, 1306, 1419, 1741, 2386
BmrFI CCNGG 6 cut(s) 68, 429, 1168, 1259, 2217, 2240
BpiI GAAGAC 3 cut(s) 271, 1188, 1519
BplI GAGNNNNNCTC 4 cut(s) 337, 369, 409, 441
BpmI CTGGAG 2 cut(s) 436, 806
Bpu10I CCTNAGC 3 cut(s) 1118, 1263, 2043
Bpu1102I GCTNAGC 2 cut(s) 1278, 2226
BpuEI CTTGAG 2 cut(s) 848, 2533
BsaAI YACGTR 1 cut(s) 1100
BsaBI GATNNNNATC 1 cut(s) 1821
BsaHI GRCGYC 3 cut(s) 620, 1138, 1473
BsaI GGTCTC 4 cut(s) 410, 416, 473, 2225
BsaJI CCNNGG 6 cut(s) 214, 283, 1107, 1560, 2380, 2548
BsaWI WCCGGW 4 cut(s) 89, 577, 1592, 2387
BsaXI ACNNNNNCTCC 6 cut(s) 445, 475, 572, 602, 2258, 2288
Bsc4I CCNNNNNNNGG 9 cut(s) 220, 629, 1064, 1264, 1613, 1650, 1796, 2048, 2263
Bse118I RCCGGY 2 cut(s) 146, 1084
Bse1I ACTGG 1 cut(s) 970
Bse8I GATNNNNATC 1 cut(s) 1821
BseAI TCCGGA 1 cut(s) 577
BseBI CCWGG 6 cut(s) 68, 429, 1168, 1259, 2217, 2240
BseDI CCNNGG 6 cut(s) 214, 283, 1107, 1560, 2380, 2548
BseGI GGATG 5 cut(s) 63, 443, 847, 1018, 2559
BseJI GATNNNNATC 1 cut(s) 1821
BseLI CCNNNNNNNGG 9 cut(s) 220, 629, 1064, 1264, 1613, 1650, 1796, 2048, 2263
BseMII CTCAG 7 cut(s) 191, 629, 759, 1109, 1254, 1269, 2240
BseNI ACTGG 1 cut(s) 970
BseRI GAGGAG 3 cut(s) 2282, 2285, 2589
BseSI GKGCMC 1 cut(s) 1431
BseYI CCCAGC 2 cut(s) 259, 925
BsgI GTGCAG 1 cut(s) 2097
BshNI GGYRCC 2 cut(s) 619, 1304
BsiHKAI GWGCWC 3 cut(s) 136, 350, 1431
BsiHKCI CYCGRG 1 cut(s) 2257
BsiSI CCGG 6 cut(s) 90, 147, 578, 1085, 1593, 2388
BslFI GGGAC 7 cut(s) 197, 788, 1080, 1753, 1973, 2153, 2240
BslI CCNNNNNNNGG 9 cut(s) 220, 629, 1064, 1264, 1613, 1650, 1796, 2048, 2263
BsmBI CGTCTC 2 cut(s) 1464, 1559
BsmFI GGGAC 7 cut(s) 197, 788, 1080, 1753, 1973, 2153, 2240
Bso31I GGTCTC 4 cut(s) 410, 416, 473, 2225
BsoBI CYCGRG 1 cut(s) 2257
Bsp1286I GDGCHC 4 cut(s) 136, 350, 1431, 1623
Bsp13I TCCGGA 1 cut(s) 577
Bsp1407I TGTACA 1 cut(s) 817
Bsp143I GATC 5 cut(s) 154, 1217, 1337, 1809, 2578
Bsp1720I GCTNAGC 2 cut(s) 1278, 2226
BspCNI CTCAG 7 cut(s) 192, 628, 760, 1110, 1255, 1270, 2239
BspEI TCCGGA 1 cut(s) 577
BspHI TCATGA 3 cut(s) 949, 1647, 2584
BspLI GGNNCC 6 cut(s) 426, 621, 1306, 1419, 1741, 2386
BspMAI CTGCAG 3 cut(s) 375, 874, 1513
BspMI ACCTGC 1 cut(s) 2279
BspPI GGATC 2 cut(s) 1225, 1804
BspQI GCTCTTC 1 cut(s) 884
BspT107I GGYRCC 2 cut(s) 619, 1304
BspTNI GGTCTC 4 cut(s) 410, 416, 473, 2225
BsrBI CCGCTC 1 cut(s) 1027
BsrFI RCCGGY 2 cut(s) 146, 1084
BsrGI TGTACA 1 cut(s) 817
BsrI ACTGG 1 cut(s) 970
BssAI RCCGGY 2 cut(s) 146, 1084
BssECI CCNNGG 6 cut(s) 214, 283, 1107, 1560, 2380, 2548
BssMI GATC 5 cut(s) 154, 1217, 1337, 1809, 2578
BssNI GRCGYC 3 cut(s) 620, 1138, 1473
BssSI CACGAG 1 cut(s) 681
BssT1I CCWWGG 4 cut(s) 283, 1107, 1560, 2380
Bst2BI CACGAG 1 cut(s) 681
Bst2UI CCWGG 6 cut(s) 68, 429, 1168, 1259, 2217, 2240
Bst4CI ACNGT 7 cut(s) 277, 559, 973, 1309, 1954, 2177, 2435
Bst6I CTCTTC 4 cut(s) 884, 1961, 2341, 2483
BstACI GRCGYC 3 cut(s) 620, 1138, 1473
BstAUI TGTACA 1 cut(s) 817
BstBAI YACGTR 1 cut(s) 1100
BstC8I GCNNGC 6 cut(s) 515, 896, 1086, 1771, 1992, 2620
BstENI CCTNNNNNAGG 1 cut(s) 218
BstF5I GGATG 5 cut(s) 63, 443, 847, 1018, 2559
BstH2I RGCGCY 2 cut(s) 165, 623
BstHHI GCGC 3 cut(s) 164, 622, 830
BstKTI GATC 5 cut(s) 157, 1220, 1340, 1812, 2581
BstMBI GATC 5 cut(s) 154, 1217, 1337, 1809, 2578
BstNI CCWGG 6 cut(s) 68, 429, 1168, 1259, 2217, 2240
BstNSI RCATGY 3 cut(s) 542, 1377, 2249
BstSCI CCNGG 6 cut(s) 66, 427, 1166, 1257, 2215, 2238
BstSFI CTRYAG 3 cut(s) 371, 870, 1509
BstSLI GKGCMC 1 cut(s) 1431
BstV2I GAAGAC 3 cut(s) 271, 1188, 1519
BstX2I RGATCY 1 cut(s) 1809
BstYI RGATCY 1 cut(s) 1809
BtrI CACGTC 1 cut(s) 1569
BtsCI GGATG 5 cut(s) 63, 443, 847, 1018, 2559
BtsIMutI CAGTG 2 cut(s) 963, 1058
BveI ACCTGC 1 cut(s) 2279
Cac8I GCNNGC 6 cut(s) 515, 896, 1086, 1771, 1992, 2620
CciI TCATGA 3 cut(s) 949, 1647, 2584
CfoI GCGC 3 cut(s) 164, 622, 830
Cfr10I RCCGGY 2 cut(s) 146, 1084
Cfr13I GGNCC 5 cut(s) 70, 385, 1417, 1740, 2390
CseI GACGC 2 cut(s) 1146, 2540
CsiI ACCWGGT 1 cut(s) 2215
Csp6I GTAC 7 cut(s) 273, 555, 818, 920, 1305, 2213, 2508
CspCI CAANNNNNGTGG 2 cut(s) 305, 340
CviQI GTAC 7 cut(s) 273, 555, 818, 920, 1305, 2213, 2508
DinI GGCGCC 1 cut(s) 621
DpnI GATC 5 cut(s) 156, 1219, 1339, 1811, 2580
DpnII GATC 5 cut(s) 154, 1217, 1337, 1809, 2578
DraI TTTAAA 2 cut(s) 1546, 2131
DrdI GACNNNNNNGTC 1 cut(s) 1747
DseDI GACNNNNNNGTC 1 cut(s) 1747
EaeI YGGCCR 3 cut(s) 77, 1177, 1819
Eam1104I CTCTTC 4 cut(s) 884, 1961, 2341, 2483
EarI CTCTTC 4 cut(s) 884, 1961, 2341, 2483
EciI GGCGGA 3 cut(s) 452, 1025, 2534
Eco130I CCWWGG 4 cut(s) 283, 1107, 1560, 2380
Eco24I GRGCYC 1 cut(s) 1623
Eco31I GGTCTC 4 cut(s) 410, 416, 473, 2225
Eco47I GGWCC 3 cut(s) 385, 1740, 2390
Eco47III AGCGCT 1 cut(s) 163
Eco57I CTGAAG 3 cut(s) 30, 1513, 2379
Eco72I CACGTG 1 cut(s) 1100
Eco88I CYCGRG 1 cut(s) 2257
EcoNI CCTNNNNNAGG 1 cut(s) 218
EcoO109I RGGNCCY 2 cut(s) 70, 1417
EcoRII CCWGG 6 cut(s) 66, 427, 1166, 1257, 2215, 2238
EcoT14I CCWWGG 4 cut(s) 283, 1107, 1560, 2380
EcoT38I GRGCYC 1 cut(s) 1623
EgeI GGCGCC 1 cut(s) 621
EheI GGCGCC 1 cut(s) 621
ErhI CCWWGG 4 cut(s) 283, 1107, 1560, 2380
Esp3I CGTCTC 2 cut(s) 1464, 1559
FalI AAGNNNNNCTT 6 cut(s) 651, 683, 1758, 1790, 2017, 2049
FaqI GGGAC 7 cut(s) 197, 788, 1080, 1753, 1973, 2153, 2240
FbaI TGATCA 1 cut(s) 2578
FblI GTMKAC 1 cut(s) 723
FokI GGATG 5 cut(s) 50, 430, 854, 1025, 2566
FriOI GRGCYC 1 cut(s) 1623
FspBI CTAG 9 cut(s) 143, 596, 1020, 1200, 1497, 1608, 1829, 2100, 2474
GlaI GCGC 3 cut(s) 163, 621, 829
GsaI CCCAGC 2 cut(s) 263, 929
GsuI CTGGAG 2 cut(s) 436, 806
HaeII RGCGCY 2 cut(s) 165, 623
HapII CCGG 6 cut(s) 90, 147, 578, 1085, 1593, 2388
HgaI GACGC 2 cut(s) 1146, 2540
HhaI GCGC 3 cut(s) 164, 622, 830
Hin1I GRCGYC 3 cut(s) 620, 1138, 1473
Hin6I GCGC 3 cut(s) 162, 620, 828
HinP1I GCGC 3 cut(s) 162, 620, 828
HincII GTYRAC 2 cut(s) 724, 2431
HindII GTYRAC 2 cut(s) 724, 2431
HindIII AAGCTT 1 cut(s) 665
HpaII CCGG 6 cut(s) 90, 147, 578, 1085, 1593, 2388
HphI GGTGA 6 cut(s) 62, 1088, 1628, 2063, 2303, 2320
Hpy166II GTNNAC 6 cut(s) 232, 724, 1270, 1429, 2328, 2431
Hpy8I GTNNAC 6 cut(s) 232, 724, 1270, 1429, 2328, 2431
Hpy99I CGWCG 1 cut(s) 536
HpyAV CCTTC 8 cut(s) 54, 83, 1408, 2028, 2112, 2208, 2354, 2551
HpyCH4III ACNGT 7 cut(s) 277, 559, 973, 1309, 1954, 2177, 2435
HpyCH4IV ACGT 7 cut(s) 338, 627, 634, 1099, 1272, 1473, 1568
HpySE526I ACGT 7 cut(s) 338, 627, 634, 1099, 1272, 1473, 1568
Hsp92I GRCGYC 3 cut(s) 620, 1138, 1473
HspAI GCGC 3 cut(s) 162, 620, 828
KasI GGCGCC 1 cut(s) 619
Kpn2I TCCGGA 1 cut(s) 577
KpnI GGTACC 1 cut(s) 1308
KroI GCCGGC 1 cut(s) 1084
KroNI GCCGGC 1 cut(s) 1086
Ksp22I TGATCA 1 cut(s) 2578
Kzo9I GATC 5 cut(s) 154, 1217, 1337, 1809, 2578
LguI GCTCTTC 1 cut(s) 884
LmnI GCTCC 7 cut(s) 139, 417, 430, 787, 825, 2020, 2602
MabI ACCWGGT 1 cut(s) 2215
MaeI CTAG 9 cut(s) 143, 596, 1020, 1200, 1497, 1608, 1829, 2100, 2474
MaeII ACGT 7 cut(s) 338, 627, 634, 1099, 1272, 1473, 1568
MaeIII GTNAC 7 cut(s) 287, 334, 1912, 2051, 2181, 2404, 2413
MalI GATC 5 cut(s) 156, 1219, 1339, 1811, 2580
MbiI CCGCTC 1 cut(s) 1027
MboI GATC 5 cut(s) 154, 1217, 1337, 1809, 2578
MfeI CAATTG 1 cut(s) 1638
MflI RGATCY 1 cut(s) 1809
MhlI GDGCHC 4 cut(s) 136, 350, 1431, 1623
MlsI TGGCCA 1 cut(s) 1821
MluNI TGGCCA 1 cut(s) 1821
Mly113I GGCGCC 1 cut(s) 620
MlyI GAGTC 7 cut(s) 39, 484, 686, 758, 1202, 1392, 2582
MmeI TCCRAC 1 cut(s) 610
Mox20I TGGCCA 1 cut(s) 1821
MroI TCCGGA 1 cut(s) 577
MroNI GCCGGC 1 cut(s) 1084
MroXI GAANNNNTTC 1 cut(s) 668
MscI TGGCCA 1 cut(s) 1821
MseI TTAA 6 cut(s) 396, 1230, 1545, 1661, 2037, 2130
MslI CAYNNNNRTG 2 cut(s) 543, 2333
Msp20I TGGCCA 1 cut(s) 1821
MspA1I CMGCKG 4 cut(s) 259, 1533, 1932, 2210
MspI CCGG 6 cut(s) 90, 147, 578, 1085, 1593, 2388
MspR9I CCNGG 6 cut(s) 68, 429, 1168, 1259, 2217, 2240
MunI CAATTG 1 cut(s) 1638
MvaI CCWGG 6 cut(s) 68, 429, 1168, 1259, 2217, 2240
NaeI GCCGGC 1 cut(s) 1086
NarI GGCGCC 1 cut(s) 620
NdeII GATC 5 cut(s) 154, 1217, 1337, 1809, 2578
NgoMIV GCCGGC 1 cut(s) 1084
NlaIV GGNNCC 6 cut(s) 426, 621, 1306, 1419, 1741, 2386
NmeAIII GCCGAG 2 cut(s) 369, 2573
NmuCI GTSAC 3 cut(s) 1912, 2051, 2413
NspI RCATGY 3 cut(s) 542, 1377, 2249
OliI CACNNNNGTG 1 cut(s) 2333
PagI TCATGA 3 cut(s) 949, 1647, 2584
PaqCI CACCTGC 1 cut(s) 2279
PciI ACATGT 2 cut(s) 1373, 2245
PciSI GCTCTTC 1 cut(s) 884
PcsI WCGNNNNNNNCGW 1 cut(s) 1713
PdiI GCCGGC 1 cut(s) 1086
PdmI GAANNNNTTC 1 cut(s) 668
PfeI GAWTC 5 cut(s) 93, 242, 1016, 1733, 2452
PflFI GACNNNGTC 1 cut(s) 2057
PflMI CCANNNNNTGG 1 cut(s) 1796
PfoI TCCNGGA 1 cut(s) 1166
PleI GAGTC 7 cut(s) 38, 484, 685, 758, 1201, 1392, 2581
PluTI GGCGCC 1 cut(s) 623
PmaCI CACGTG 1 cut(s) 1100
PmlI CACGTG 1 cut(s) 1100
PpsI GAGTC 7 cut(s) 38, 484, 685, 758, 1201, 1392, 2581
Ppu21I YACGTR 1 cut(s) 1100
PscI ACATGT 2 cut(s) 1373, 2245
PshBI ATTAAT 1 cut(s) 1661
PsiI TTATAA 1 cut(s) 113
Psp1406I AACGTT 2 cut(s) 338, 1272
Psp6I CCWGG 6 cut(s) 66, 427, 1166, 1257, 2215, 2238
PspCI CACGTG 1 cut(s) 1100
PspFI CCCAGC 2 cut(s) 259, 925
PspGI CCWGG 6 cut(s) 66, 427, 1166, 1257, 2215, 2238
PspN4I GGNNCC 6 cut(s) 426, 621, 1306, 1419, 1741, 2386
PspPI GGNCC 5 cut(s) 70, 385, 1417, 1740, 2390
PstI CTGCAG 3 cut(s) 375, 874, 1513
PsuI RGATCY 1 cut(s) 1809
PsyI GACNNNGTC 1 cut(s) 2057
RsaI GTAC 7 cut(s) 274, 556, 819, 921, 1306, 2214, 2509
RsaNI GTAC 7 cut(s) 273, 555, 818, 920, 1305, 2213, 2508
RseI CAYNNNNRTG 2 cut(s) 543, 2333
SalI GTCGAC 1 cut(s) 722
SapI GCTCTTC 1 cut(s) 884
SaqAI TTAA 6 cut(s) 396, 1230, 1545, 1661, 2037, 2130
Sau3AI GATC 5 cut(s) 154, 1217, 1337, 1809, 2578
Sau96I GGNCC 5 cut(s) 70, 385, 1417, 1740, 2390
SchI GAGTC 7 cut(s) 39, 484, 686, 758, 1202, 1392, 2582
ScrFI CCNGG 6 cut(s) 68, 429, 1168, 1259, 2217, 2240
SduI GDGCHC 4 cut(s) 136, 350, 1431, 1623
SexAI ACCWGGT 1 cut(s) 2215
SfcI CTRYAG 3 cut(s) 371, 870, 1509
SfoI GGCGCC 1 cut(s) 621
SinI GGWCC 3 cut(s) 385, 1740, 2390
SmiMI CAYNNNNRTG 2 cut(s) 543, 2333
SmlI CTYRAG 2 cut(s) 863, 2512
SmoI CTYRAG 2 cut(s) 863, 2512
SspDI GGCGCC 1 cut(s) 619
SspMI CTAG 9 cut(s) 143, 596, 1020, 1200, 1497, 1608, 1829, 2100, 2474
StyD4I CCNGG 6 cut(s) 66, 427, 1166, 1257, 2215, 2238
StyI CCWWGG 4 cut(s) 283, 1107, 1560, 2380
TaaI ACNGT 7 cut(s) 277, 559, 973, 1309, 1954, 2177, 2435
TaiI ACGT 7 cut(s) 341, 630, 637, 1102, 1275, 1476, 1571
TaqI TCGA 3 cut(s) 534, 723, 1043
TaqII GACCGA 1 cut(s) 398
TatI WGTACW 2 cut(s) 554, 817
TauI GCSGC 3 cut(s) 437, 1091, 2210
TfiI GAWTC 5 cut(s) 93, 242, 1016, 1733, 2452
Tru1I TTAA 6 cut(s) 396, 1230, 1545, 1661, 2037, 2130
Tru9I TTAA 6 cut(s) 396, 1230, 1545, 1661, 2037, 2130
TscAI CASTG 2 cut(s) 970, 1058
TseFI GTSAC 3 cut(s) 1912, 2051, 2413
Tsp45I GTSAC 3 cut(s) 1912, 2051, 2413
TspDTI ATGAA 4 cut(s) 858, 938, 1263, 1856
TspGWI ACGGA 5 cut(s) 235, 774, 1084, 1254, 1722
TspRI CASTG 2 cut(s) 970, 1058
Tth111I GACNNNGTC 1 cut(s) 2057
Van91I CCANNNNNTGG 1 cut(s) 1796
VneI GTGCAC 1 cut(s) 1427
VpaK11BI GGWCC 3 cut(s) 385, 1740, 2390
VspI ATTAAT 1 cut(s) 1661
XagI CCTNNNNNAGG 1 cut(s) 218
XapI RAATTY 8 cut(s) 728, 812, 934, 958, 1869, 1879, 1937, 2366
XbaI TCTAGA 3 cut(s) 1019, 1199, 2473
XceI RCATGY 3 cut(s) 542, 1377, 2249
XcmI CCANNNNNNNNNTGG 2 cut(s) 493, 962
XmiI GTMKAC 1 cut(s) 723
XmnI GAANNNNTTC 1 cut(s) 668
XspI CTAG 9 cut(s) 143, 596, 1020, 1200, 1497, 1608, 1829, 2100, 2474
ZraI GACGTC 1 cut(s) 1474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.