RchiOBHm_Chr6g0309151

Staphylococcal nuclease domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
67019198 .. 67021831
2634 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27799

Sequence Viewer

Length: 2634 bp
ATGGCATCACAATGGTATAGGGGCAGAGTCAAGGCTGTTCCTTCAGGCGATTCCCTTGTCATCCAGGCCCTTCAGTCAGACAAGACCGGAATCCTACAGGAAAGAAGTATTACTTTGTTATCAGTTCGTGCTCCCAAACTGGCCAGTAAAGATCGCAGTACTGATGATGAGCCTTTTGCATGGGACAGCAGAGAGTATCTGAGGAAGCTCTGCATCGGAAAGGAGGTGGTTTTCAGCATTGAGCAGGGCGTTGGCTCTGTTTTCCTTGAAAACAATAATGTTGCAGCCCTTGTTGTTCAAAAAGGGTGGGCAGCTGTCACGTCACCGAGCACAACTCCTTACAATTGTGAGCTGCAGTTTCACATGGATCAAGCCTTTAATAAAGGTCTTGGTCGCTGGAGCACGGTTCCAGGTGCGGCGGAGGCATCCATTAGGACTCTACCTCCCCAACTCAACTTAGAGACCATGAAGACTCTGTTGGCTGCAAACAAGGGCAAGCCCATAGAAGCTATTGTCGAGCAGGTTGATGAGGGCAGTATTGTTCAGGCTCACTTGCTTCCGGAGTTTCAGTTTGTCCGTGTCATTGTTGCAGGAACTCAGGCGCCCTACATTGGACCTAATGCTTATCCTTTCGCACTAGAAGCCAAGTTTTTCACGGAGTCTCGTGTGTTGAATAGAGATGTGCATATTGTTCTGGAAGGTGTTGATAAGTTCAGCCGTCTGATAGGCTCTGTGTATTACCCCGATGGAGACTCCGAAAAGGACTTGGGCCTGGAGCTTGTGGAGAATGGTTATGCTAAATATGTACCATGGAGCGCGAAAGTGATGGATGAAGATGCAAGCCGGCGGCTCAAGACTGCAGAGCTTGAAGCTAAGAAAAACAAGCTGGGGATTTGGACACACTTTGTACCCCCAGCTACAAATTCCAAGCCAATTCATGACCAGAATTTCACAGGAATAGTTGTGGAGGTTGTAAGTGGGGAATGTGTCATTGTGGCTAATGATTCTGGAGAGCGGAGAGTCAATCTTTCGAGTATTTGGTGTCCGAAGATGGGAAATCCTCGTAGAGGTGATGAGCCTGCTGCATATGCACGTGAAGCCAAGGAGTTGCTGAGGACACGCCTTATTGGACGCCAAGTGAATGTTCAAATGGAGTATTCAAGGAAGGTCAGCCAAGCAGATGCAGATTCTTCCAGAGTAATAGATTTCGGATCAGTCTTTATTAAGGCTGAGGGGGAAGATAAAAGCAACCAGGCTAAGGAAAACGTTGCTGAGCTTGTGGTTGCATCTGGCTTCGGCACTGTTATCAAACACCGAGATTTTGAGGAGAGATCAAGATACTATGATGCCCTTCTTGCTGCCGAATCAGGCGCTATTGCTGGAAAGAAAGGACTACATTCTTCCAAGGAGGCCCCCGTTGTGCACATGACAGACTTGACAATGGCAACGGCCAAGAAAGCAAGAGACGTCTTGCCATCCTTGCAGCGAAGTAGGAGAGTTTCTGCAGTTGTGGAATATGTCCTCAGCGGTCATCGTTTTAAACTATACATTCCCAAGGAGACGTGCAGCATTTCCTTCTCTCTCTCCGGTGTGAGATGTCCCGGTCGCGATGAGCCCTATTCGGATGAAGCAATTGCAGTAATGAGGCGAAGATTAATGCAGAGGGATGTTGAGATTGAAGTGGAGACTGTTGATAGAAACGGAACTTTCTTGGGAACTCTATGGGAGTCGGGGACCAATGTGTCAATTACCCTCGTTGAAGCTGGCCTTGCCAAATATATTCCCTTTGGTGGCAGTGACAAGGTCCAAGATGGCCACCTTCTTGAACGAGCTATGAAAAATGCAAAAACGAAGAAGCTGAAAATTTGGGAAAATTTTGAAGGAAAACCCAACAAACAGAAAGAACTAAAGGTAGTGATTACAGAAGTTTTGGATAGAGGTAAATTTTATGTGCAGACAGTTGGGGACGAGAAGAGTGCCTCTATTCAGCAACAGCTTACTTCTTTGAACCTTGAAGAAGCTCCTTCTGGAAGTGACGCTTTTAATCCTAGGGAGGGTGACATTGTCCTTGCTCAGTTTAGTGCAGATAATTCTTGGAACCGAGCTAGGATTGTCAATGCGCGAAAAGACAAGTTTGAAGTGTTCTACATTGACTATGGTAATCAAGAGGCTGTCCCTTACAGTCAGTTACGGCCTCTTAACACTTCTGCTGCCTCTGCACCTGGTCTTGCTCAGCTATGCAGCCTTGCACATGTTACTGTCCCAAGCTTGGAGGATGAGTTTGGTCAAGAAGCAGGAGAGTATTTGAGTGAGTGCACATTGGACAAAGAGTTCACGGCCGTGATTGAGGGAAGGGATATTTCCGGAGGAAAATTTGCTAAAGGCCAGGGAACCGGACCAGCTCTTATGGTAACTCTCTTCGCGGTAGAAGATAATGATGACAGTATAAATGCTGCCATGCTTCAGAATGGACTTGCTAGTCTAGATAACCAGAAGAGGTCTTGGAAGTCTCGTACCTTGAGAGAGTTCCAGGAAAAAGCACAAACCTTCCGCCAGGGAATGTGGCATGATTATTACGAGTCTGATCATCATGAGAACAGAGCTCCTCCTGCAAGAAAGGCTGCTGGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000932 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006139 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009057 GO:0009058 GO:0009266 GO:0009408 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009685 GO:0009686 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010035 GO:0010038 GO:0010371 GO:0010372 GO:0010467 GO:0010468 GO:0010494 GO:0010565 GO:0010605 GO:0010629 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016070 GO:0016071 GO:0016101 GO:0016102 GO:0016114 GO:0016787 GO:0016788 GO:0019216 GO:0019222 GO:0019439 GO:0019747 GO:0019752 GO:0030054 GO:0030312 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031967 GO:0031975 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034605 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0043455 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044265 GO:0044270 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046394 GO:0046483 GO:0046686 GO:0046700 GO:0046885 GO:0046886 GO:0046889 GO:0046890 GO:0048518 GO:0048519 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0080090 GO:0090304 GO:0090305 GO:0090351 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

877

Amino Acids

97.18

Weight (kDa)

6.36

Isoelectric Point (pI)

37.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNase PF00565 207 - 300 5.8e-15 Staphylococcal nuclease homologue
SNase PF00565 526 - 625 1e-14 Staphylococcal nuclease homologue
TUDOR PF00567 632 - 751 2.2e-23 Tudor domain
SNase PF00565 757 - 857 3.2e-07 Staphylococcal nuclease homologue
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g14720
rosa_chinensis RchiOBHm_Chr6g0309151
rosa_laevigata RLG00000010586
rosa_multiflora Rmu_sc0020102.1_g000004
rosa_rugosa Rorug06G0370100
rosa_samantha Rh6AG482900 Rh6BG492000 Rh6CG496700 Rh6DG483600
rosa_wichuraiana Rw6G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1741, 2478
AatII GACGTC 1 cut(s) 1470
Acc36I ACCTGC 1 cut(s) 511
AccB1I GGYRCC 1 cut(s) 601
AccBSI CCGCTC 1 cut(s) 1015
AccII CGCG 4 cut(s) 818, 1608, 2122, 2423
AccIII TCCGGA 2 cut(s) 559, 2363
AciI CCGC 7 cut(s) 416, 419, 847, 1015, 1527, 2423, 2551
AclI AACGTT 1 cut(s) 1266
AclWI GGATC 2 cut(s) 375, 1219
AcoI YGGCCR 4 cut(s) 141, 1449, 1813, 2337
AcsI RAATTY 6 cut(s) 922, 946, 1863, 1873, 1943, 2372
AcuI CTGAAG 3 cut(s) 27, 56, 2447
AcvI CACGTG 1 cut(s) 1094
AcyI GRCGYC 3 cut(s) 602, 1132, 1467
AfaI GTAC 4 cut(s) 160, 807, 909, 2515
AfiI CCNNNNNNNGG 7 cut(s) 611, 1052, 1067, 1258, 1790, 2054, 2269
AflIII ACRYGT 1 cut(s) 2251
AjiI CACGTC 2 cut(s) 321, 1563
AjnI CCWGG 8 cut(s) 63, 409, 771, 1251, 2221, 2385, 2529, 2553
AjuI GAANNNNNNNTTGG 4 cut(s) 461, 493, 1128, 1160
AleI CACNNNNGTG 1 cut(s) 2339
AloI GAACNNNNNNTCC 2 cut(s) 2315, 2347
Alw21I GWGCWC 6 cut(s) 133, 332, 404, 1425, 2318, 2605
Alw26I GTCTC 7 cut(s) 455, 666, 744, 1458, 1553, 1679, 2514
Alw44I GTGCAC 2 cut(s) 1421, 2314
AlwI GGATC 2 cut(s) 375, 1219
Aor13HI TCCGGA 2 cut(s) 559, 2363
ApaLI GTGCAC 2 cut(s) 1421, 2314
ApoI RAATTY 6 cut(s) 922, 946, 1863, 1873, 1943, 2372
AseI ATTAAT 1 cut(s) 1655
AspA2I CCTAGG 1 cut(s) 2048
AspLEI GCGC 4 cut(s) 604, 818, 1373, 2122
AspS9I GGNCC 7 cut(s) 67, 614, 769, 1411, 1734, 1804, 2396
AsuC2I CCSGG 1 cut(s) 1602
AsuHPI GGTGA 3 cut(s) 315, 1082, 2069
AvaII GGWCC 4 cut(s) 614, 1734, 1804, 2396
AvrII CCTAGG 1 cut(s) 2048
BaeGI GKGCMC 2 cut(s) 1425, 2318
BalI TGGCCA 2 cut(s) 143, 1815
BanI GGYRCC 1 cut(s) 601
BanII GRGCYC 2 cut(s) 1617, 2605
BauI CACGAG 1 cut(s) 663
BbrPI CACGTG 1 cut(s) 1094
BbsI GAAGAC 1 cut(s) 476
Bbv12I GWGCWC 6 cut(s) 133, 332, 404, 1425, 2318, 2605
BbvCI CCTCAGC 3 cut(s) 1112, 1230, 1523
BccI CCATC 5 cut(s) 740, 820, 1045, 1483, 1805
BceAI ACGGC 5 cut(s) 702, 1464, 2207, 2324, 2352
BcgI CGANNNNNNTGC 2 cut(s) 1958, 1992
BciT130I CCWGG 8 cut(s) 65, 411, 773, 1253, 2223, 2387, 2531, 2555
BclI TGATCA 1 cut(s) 2584
BcnI CCSGG 1 cut(s) 1602
BcoDI GTCTC 7 cut(s) 455, 666, 744, 1458, 1553, 1679, 2514
BfaI CTAG 5 cut(s) 638, 2049, 2106, 2478, 2483
BfmI CTRYAG 4 cut(s) 95, 353, 858, 1503
BfoI RGCGCY 2 cut(s) 605, 1374
BfuAI ACCTGC 1 cut(s) 511
BlnI CCTAGG 1 cut(s) 2048
BlpI GCTNAGC 2 cut(s) 1272, 2232
BmcAI AGTACT 1 cut(s) 160
Bme1390I CCNGG 9 cut(s) 65, 411, 773, 1253, 1602, 2223, 2387, 2531, 2555
Bme18I GGWCC 4 cut(s) 614, 1734, 1804, 2396
BmgBI CACGTC 2 cut(s) 321, 1563
BmgT120I GGNCC 7 cut(s) 67, 614, 769, 1411, 1734, 1804, 2396
BmiI GGNNCC 6 cut(s) 408, 603, 1413, 1735, 2099, 2392
BmrFI CCNGG 9 cut(s) 65, 411, 773, 1253, 1602, 2223, 2387, 2531, 2555
BmsI GCATC 7 cut(s) 14, 222, 434, 826, 1171, 1295, 1336
BpiI GAAGAC 1 cut(s) 476
BplI GAGNNNNNCTC 2 cut(s) 319, 351
BpmI CTGGAG 3 cut(s) 418, 794, 1029
Bpu10I CCTNAGC 4 cut(s) 1112, 1230, 1257, 1523
Bpu1102I GCTNAGC 2 cut(s) 1272, 2232
BpuEI CTTGAG 2 cut(s) 836, 2539
BpuMI CCSGG 1 cut(s) 1602
BsaAI YACGTR 1 cut(s) 1094
BsaHI GRCGYC 3 cut(s) 602, 1132, 1467
BsaI GGTCTC 1 cut(s) 455
BsaJI CCNNGG 7 cut(s) 809, 1101, 1404, 1554, 2048, 2386, 2554
BsaWI WCCGGW 5 cut(s) 86, 559, 1586, 2363, 2393
BsaXI ACNNNNNCTCC 6 cut(s) 427, 457, 554, 584, 2264, 2294
Bsc4I CCNNNNNNNGG 7 cut(s) 611, 1052, 1067, 1258, 1790, 2054, 2269
Bse118I RCCGGY 1 cut(s) 843
Bse1I ACTGG 2 cut(s) 144, 144
BseAI TCCGGA 2 cut(s) 559, 2363
BseBI CCWGG 8 cut(s) 65, 411, 773, 1253, 2223, 2387, 2531, 2555
BseDI CCNNGG 7 cut(s) 809, 1101, 1404, 1554, 2048, 2386, 2554
BseGI GGATG 7 cut(s) 60, 425, 835, 1475, 1630, 1672, 2281
BseLI CCNNNNNNNGG 7 cut(s) 611, 1052, 1067, 1258, 1790, 2054, 2269
BseMII CTCAG 8 cut(s) 191, 611, 1103, 1221, 1263, 1537, 2087, 2246
BseNI ACTGG 2 cut(s) 144, 144
BseRI GAGGAG 2 cut(s) 1340, 2595
BseSI GKGCMC 2 cut(s) 1425, 2318
BseX3I CGGCCG 1 cut(s) 2337
BseYI CCCAGC 2 cut(s) 886, 913
BsgI GTGCAG 4 cut(s) 1585, 1973, 2103, 2202
Bsh1236I CGCG 4 cut(s) 818, 1608, 2122, 2423
Bsh1285I CGRYCG 2 cut(s) 1606, 2340
BshNI GGYRCC 1 cut(s) 601
BsiEI CGRYCG 2 cut(s) 1606, 2340
BsiHKAI GWGCWC 6 cut(s) 133, 332, 404, 1425, 2318, 2605
BsiSI CCGG 7 cut(s) 87, 560, 844, 1587, 1602, 2364, 2394
BslFI GGGAC 6 cut(s) 197, 1584, 1747, 1979, 2159, 2246
BslI CCNNNNNNNGG 7 cut(s) 611, 1052, 1067, 1258, 1790, 2054, 2269
BsmAI GTCTC 7 cut(s) 455, 666, 744, 1458, 1553, 1679, 2514
BsmBI CGTCTC 2 cut(s) 1458, 1553
BsmFI GGGAC 6 cut(s) 197, 1584, 1747, 1979, 2159, 2246
Bso31I GGTCTC 1 cut(s) 455
Bsp1286I GDGCHC 7 cut(s) 133, 332, 404, 1425, 1617, 2318, 2605
Bsp13I TCCGGA 2 cut(s) 559, 2363
Bsp143I GATC 5 cut(s) 151, 367, 1211, 1331, 2584
Bsp1720I GCTNAGC 2 cut(s) 1272, 2232
Bsp19I CCATGG 1 cut(s) 809
Bsp68I TCGCGA 1 cut(s) 1608
BspACI CCGC 7 cut(s) 416, 419, 847, 1015, 1527, 2423, 2551
BspCNI CTCAG 8 cut(s) 192, 610, 1104, 1222, 1264, 1536, 2086, 2245
BspEI TCCGGA 2 cut(s) 559, 2363
BspFNI CGCG 4 cut(s) 818, 1608, 2122, 2423
BspHI TCATGA 2 cut(s) 937, 2590
BspLI GGNNCC 6 cut(s) 408, 603, 1413, 1735, 2099, 2392
BspMAI CTGCAG 3 cut(s) 357, 862, 1507
BspMI ACCTGC 1 cut(s) 511
BspPI GGATC 2 cut(s) 375, 1219
BspT107I GGYRCC 1 cut(s) 601
BspTNI GGTCTC 1 cut(s) 455
BsrBI CCGCTC 1 cut(s) 1015
BsrFI RCCGGY 1 cut(s) 843
BsrI ACTGG 2 cut(s) 144, 144
BssAI RCCGGY 1 cut(s) 843
BssECI CCNNGG 7 cut(s) 809, 1101, 1404, 1554, 2048, 2386, 2554
BssMI GATC 5 cut(s) 151, 367, 1211, 1331, 2584
BssNI GRCGYC 3 cut(s) 602, 1132, 1467
BssSI CACGAG 1 cut(s) 663
BssT1I CCWWGG 5 cut(s) 809, 1101, 1404, 1554, 2048
Bst2BI CACGAG 1 cut(s) 663
Bst2UI CCWGG 8 cut(s) 65, 411, 773, 1253, 2223, 2387, 2531, 2555
Bst4CI ACNGT 7 cut(s) 406, 1303, 1690, 1960, 2183, 2260, 2444
Bst6I CTCTTC 3 cut(s) 1967, 2423, 2489
BstACI GRCGYC 3 cut(s) 602, 1132, 1467
BstBAI YACGTR 1 cut(s) 1094
BstC8I GCNNGC 6 cut(s) 497, 841, 845, 1080, 1765, 2626
BstDSI CCRYGG 1 cut(s) 809
BstENI CCTNNNNNAGG 1 cut(s) 1065
BstF5I GGATG 7 cut(s) 60, 425, 835, 1475, 1630, 1672, 2281
BstFNI CGCG 4 cut(s) 818, 1608, 2122, 2423
BstH2I RGCGCY 2 cut(s) 605, 1374
BstHHI GCGC 4 cut(s) 604, 818, 1373, 2122
BstKTI GATC 5 cut(s) 154, 370, 1214, 1334, 2587
BstMAI GTCTC 7 cut(s) 455, 666, 744, 1458, 1553, 1679, 2514
BstMBI GATC 5 cut(s) 151, 367, 1211, 1331, 2584
BstMCI CGRYCG 2 cut(s) 1606, 2340
BstNI CCWGG 8 cut(s) 65, 411, 773, 1253, 2223, 2387, 2531, 2555
BstNSI RCATGY 1 cut(s) 2255
BstSCI CCNGG 9 cut(s) 63, 409, 771, 1251, 1600, 2221, 2385, 2529, 2553
BstSFI CTRYAG 4 cut(s) 95, 353, 858, 1503
BstSLI GKGCMC 2 cut(s) 1425, 2318
BstUI CGCG 4 cut(s) 818, 1608, 2122, 2423
BstV2I GAAGAC 1 cut(s) 476
BstZI CGGCCG 1 cut(s) 2337
BtgI CCRYGG 1 cut(s) 809
BtgZI GCGATG 1 cut(s) 1623
BtrI CACGTC 2 cut(s) 321, 1563
BtsCI GGATG 7 cut(s) 60, 425, 835, 1475, 1630, 1672, 2281
BtsI GCAGTG 1 cut(s) 1801
BtsIMutI CAGTG 2 cut(s) 1299, 1801
BtuMI TCGCGA 1 cut(s) 1608
BveI ACCTGC 1 cut(s) 511
Cac8I GCNNGC 6 cut(s) 497, 841, 845, 1080, 1765, 2626
CciI TCATGA 2 cut(s) 937, 2590
CfoI GCGC 4 cut(s) 604, 818, 1373, 2122
Cfr10I RCCGGY 1 cut(s) 843
Cfr13I GGNCC 7 cut(s) 67, 614, 769, 1411, 1734, 1804, 2396
CseI GACGC 2 cut(s) 1140, 2045
CsiI ACCWGGT 1 cut(s) 2221
Csp6I GTAC 4 cut(s) 159, 806, 908, 2514
CspCI CAANNNNNGTGG 2 cut(s) 287, 322
CviQI GTAC 4 cut(s) 159, 806, 908, 2514
DinI GGCGCC 1 cut(s) 603
DpnI GATC 5 cut(s) 153, 369, 1213, 1333, 2586
DpnII GATC 5 cut(s) 151, 367, 1211, 1331, 2584
DraI TTTAAA 1 cut(s) 1540
DrdI GACNNNNNNGTC 2 cut(s) 1741, 2478
DseDI GACNNNNNNGTC 2 cut(s) 1741, 2478
EaeI YGGCCR 4 cut(s) 141, 1449, 1813, 2337
EagI CGGCCG 1 cut(s) 2337
Eam1104I CTCTTC 3 cut(s) 1967, 2423, 2489
EarI CTCTTC 3 cut(s) 1967, 2423, 2489
EciI GGCGGA 2 cut(s) 434, 2540
Ecl136II GAGCTC 1 cut(s) 2603
EclXI CGGCCG 1 cut(s) 2337
Eco130I CCWWGG 5 cut(s) 809, 1101, 1404, 1554, 2048
Eco24I GRGCYC 2 cut(s) 1617, 2605
Eco31I GGTCTC 1 cut(s) 455
Eco47I GGWCC 4 cut(s) 614, 1734, 1804, 2396
Eco52I CGGCCG 1 cut(s) 2337
Eco53kI GAGCTC 1 cut(s) 2603
Eco57I CTGAAG 3 cut(s) 27, 56, 2447
Eco72I CACGTG 1 cut(s) 1094
EcoICRI GAGCTC 1 cut(s) 2603
EcoNI CCTNNNNNAGG 1 cut(s) 1065
EcoO109I RGGNCCY 2 cut(s) 67, 1411
EcoRII CCWGG 8 cut(s) 63, 409, 771, 1251, 2221, 2385, 2529, 2553
EcoT14I CCWWGG 5 cut(s) 809, 1101, 1404, 1554, 2048
EcoT38I GRGCYC 2 cut(s) 1617, 2605
EgeI GGCGCC 1 cut(s) 603
EheI GGCGCC 1 cut(s) 603
ErhI CCWWGG 5 cut(s) 809, 1101, 1404, 1554, 2048
Esp3I CGTCTC 2 cut(s) 1458, 1553
FalI AAGNNNNNCTT 6 cut(s) 97, 129, 1752, 1784, 2023, 2055
FaqI GGGAC 6 cut(s) 197, 1584, 1747, 1979, 2159, 2246
FauNDI CATATG 1 cut(s) 1087
FbaI TGATCA 1 cut(s) 2584
FokI GGATG 7 cut(s) 47, 412, 842, 1462, 1637, 1679, 2288
FriOI GRGCYC 2 cut(s) 1617, 2605
FspBI CTAG 5 cut(s) 638, 2049, 2106, 2478, 2483
GlaI GCGC 4 cut(s) 603, 817, 1372, 2121
GsaI CCCAGC 2 cut(s) 890, 917
GsuI CTGGAG 3 cut(s) 418, 794, 1029
HaeII RGCGCY 2 cut(s) 605, 1374
HapII CCGG 7 cut(s) 87, 560, 844, 1587, 1602, 2364, 2394
HgaI GACGC 2 cut(s) 1140, 2045
HhaI GCGC 4 cut(s) 604, 818, 1373, 2122
Hin1I GRCGYC 3 cut(s) 602, 1132, 1467
Hin6I GCGC 4 cut(s) 602, 816, 1371, 2120
HinP1I GCGC 4 cut(s) 602, 816, 1371, 2120
HindIII AAGCTT 1 cut(s) 2266
HpaII CCGG 7 cut(s) 87, 560, 844, 1587, 1602, 2364, 2394
HphI GGTGA 3 cut(s) 315, 1082, 2069
Hpy166II GTNNAC 3 cut(s) 1423, 2316, 2334
Hpy8I GTNNAC 3 cut(s) 1423, 2316, 2334
HpyCH4III ACNGT 7 cut(s) 406, 1303, 1690, 1960, 2183, 2260, 2444
HpyCH4IV ACGT 5 cut(s) 320, 1093, 1266, 1467, 1562
HpySE526I ACGT 5 cut(s) 320, 1093, 1266, 1467, 1562
Hsp92I GRCGYC 3 cut(s) 602, 1132, 1467
HspAI GCGC 4 cut(s) 602, 816, 1371, 2120
KasI GGCGCC 1 cut(s) 601
Kpn2I TCCGGA 2 cut(s) 559, 2363
KroI GCCGGC 1 cut(s) 843
KroNI GCCGGC 1 cut(s) 845
Ksp22I TGATCA 1 cut(s) 2584
Kzo9I GATC 5 cut(s) 151, 367, 1211, 1331, 2584
LmnI GCTCC 6 cut(s) 136, 399, 775, 813, 2026, 2608
LweI GCATC 7 cut(s) 14, 222, 434, 826, 1171, 1295, 1336
MabI ACCWGGT 1 cut(s) 2221
MaeI CTAG 5 cut(s) 638, 2049, 2106, 2478, 2483
MaeII ACGT 5 cut(s) 320, 1093, 1266, 1467, 1562
MaeIII GTNAC 8 cut(s) 316, 321, 1796, 2033, 2057, 2187, 2254, 2410
MalI GATC 5 cut(s) 153, 369, 1213, 1333, 2586
MbiI CCGCTC 1 cut(s) 1015
MboI GATC 5 cut(s) 151, 367, 1211, 1331, 2584
MfeI CAATTG 2 cut(s) 343, 1632
MhlI GDGCHC 7 cut(s) 133, 332, 404, 1425, 1617, 2318, 2605
MlsI TGGCCA 2 cut(s) 143, 1815
MluNI TGGCCA 2 cut(s) 143, 1815
Mly113I GGCGCC 1 cut(s) 602
MlyI GAGTC 8 cut(s) 36, 430, 466, 668, 746, 1029, 1736, 2588
Mox20I TGGCCA 2 cut(s) 143, 1815
MroI TCCGGA 2 cut(s) 559, 2363
MroNI GCCGGC 1 cut(s) 843
MscI TGGCCA 2 cut(s) 143, 1815
MseI TTAA 6 cut(s) 378, 1224, 1539, 1655, 2043, 2199
MslI CAYNNNNRTG 2 cut(s) 10, 2339
Msp20I TGGCCA 2 cut(s) 143, 1815
MspA1I CMGCKG 2 cut(s) 314, 1527
MspI CCGG 7 cut(s) 87, 560, 844, 1587, 1602, 2364, 2394
MspR9I CCNGG 9 cut(s) 65, 411, 773, 1253, 1602, 2223, 2387, 2531, 2555
MunI CAATTG 2 cut(s) 343, 1632
MvaI CCWGG 8 cut(s) 65, 411, 773, 1253, 2223, 2387, 2531, 2555
MvnI CGCG 4 cut(s) 818, 1608, 2122, 2423
NaeI GCCGGC 1 cut(s) 845
NarI GGCGCC 1 cut(s) 602
NciI CCSGG 1 cut(s) 1602
NcoI CCATGG 1 cut(s) 809
NdeI CATATG 1 cut(s) 1087
NdeII GATC 5 cut(s) 151, 367, 1211, 1331, 2584
NgoMIV GCCGGC 1 cut(s) 843
NlaIV GGNNCC 6 cut(s) 408, 603, 1413, 1735, 2099, 2392
NmuCI GTSAC 5 cut(s) 316, 321, 1796, 2033, 2057
NruI TCGCGA 1 cut(s) 1608
NspI RCATGY 1 cut(s) 2255
OliI CACNNNNGTG 1 cut(s) 2339
PagI TCATGA 2 cut(s) 937, 2590
PciI ACATGT 1 cut(s) 2251
PdiI GCCGGC 1 cut(s) 845
PfeI GAWTC 5 cut(s) 50, 90, 1004, 1187, 1364
PflFI GACNNNGTC 2 cut(s) 1802, 2063
PfoI TCCNGGA 1 cut(s) 2529
PleI GAGTC 8 cut(s) 35, 430, 466, 667, 746, 1028, 1735, 2587
PluTI GGCGCC 1 cut(s) 605
PmaCI CACGTG 1 cut(s) 1094
PmlI CACGTG 1 cut(s) 1094
PpsI GAGTC 8 cut(s) 35, 430, 466, 667, 746, 1028, 1735, 2587
Ppu21I YACGTR 1 cut(s) 1094
PscI ACATGT 1 cut(s) 2251
PshBI ATTAAT 1 cut(s) 1655
Psp124BI GAGCTC 1 cut(s) 2605
Psp1406I AACGTT 1 cut(s) 1266
Psp6I CCWGG 8 cut(s) 63, 409, 771, 1251, 2221, 2385, 2529, 2553
PspCI CACGTG 1 cut(s) 1094
PspFI CCCAGC 2 cut(s) 886, 913
PspGI CCWGG 8 cut(s) 63, 409, 771, 1251, 2221, 2385, 2529, 2553
PspN4I GGNNCC 6 cut(s) 408, 603, 1413, 1735, 2099, 2392
PspPI GGNCC 7 cut(s) 67, 614, 769, 1411, 1734, 1804, 2396
PstI CTGCAG 3 cut(s) 357, 862, 1507
PsyI GACNNNGTC 2 cut(s) 1802, 2063
PvuII CAGCTG 1 cut(s) 314
RruI TCGCGA 1 cut(s) 1608
RsaI GTAC 4 cut(s) 160, 807, 909, 2515
RsaNI GTAC 4 cut(s) 159, 806, 908, 2514
RseI CAYNNNNRTG 2 cut(s) 10, 2339
SacI GAGCTC 1 cut(s) 2605
SaqAI TTAA 6 cut(s) 378, 1224, 1539, 1655, 2043, 2199
Sau3AI GATC 5 cut(s) 151, 367, 1211, 1331, 2584
Sau96I GGNCC 7 cut(s) 67, 614, 769, 1411, 1734, 1804, 2396
ScaI AGTACT 1 cut(s) 160
SchI GAGTC 8 cut(s) 36, 430, 466, 668, 746, 1029, 1736, 2588
ScrFI CCNGG 9 cut(s) 65, 411, 773, 1253, 1602, 2223, 2387, 2531, 2555
SduI GDGCHC 7 cut(s) 133, 332, 404, 1425, 1617, 2318, 2605
SexAI ACCWGGT 1 cut(s) 2221
SfaNI GCATC 7 cut(s) 14, 222, 434, 826, 1171, 1295, 1336
SfcI CTRYAG 4 cut(s) 95, 353, 858, 1503
SfoI GGCGCC 1 cut(s) 603
SinI GGWCC 4 cut(s) 614, 1734, 1804, 2396
SmiMI CAYNNNNRTG 2 cut(s) 10, 2339
SmlI CTYRAG 2 cut(s) 851, 2518
SmoI CTYRAG 2 cut(s) 851, 2518
SsiI CCGC 7 cut(s) 416, 419, 847, 1015, 1527, 2423, 2551
SspDI GGCGCC 1 cut(s) 601
SspMI CTAG 5 cut(s) 638, 2049, 2106, 2478, 2483
SstI GAGCTC 1 cut(s) 2605
StyD4I CCNGG 9 cut(s) 63, 409, 771, 1251, 1600, 2221, 2385, 2529, 2553
StyI CCWWGG 5 cut(s) 809, 1101, 1404, 1554, 2048
TaaI ACNGT 7 cut(s) 406, 1303, 1690, 1960, 2183, 2260, 2444
TaiI ACGT 5 cut(s) 323, 1096, 1269, 1470, 1565
TaqI TCGA 2 cut(s) 516, 1031
TatI WGTACW 1 cut(s) 158
TauI GCSGC 2 cut(s) 419, 850
TfiI GAWTC 5 cut(s) 50, 90, 1004, 1187, 1364
Tru1I TTAA 6 cut(s) 378, 1224, 1539, 1655, 2043, 2199
Tru9I TTAA 6 cut(s) 378, 1224, 1539, 1655, 2043, 2199
TscAI CASTG 2 cut(s) 1306, 1801
TseFI GTSAC 5 cut(s) 316, 321, 1796, 2033, 2057
Tsp45I GTSAC 5 cut(s) 316, 321, 1796, 2033, 2057
TspDTI ATGAA 5 cut(s) 482, 846, 926, 1641, 1850
TspGWI ACGGA 3 cut(s) 566, 671, 1716
TspRI CASTG 2 cut(s) 1306, 1801
Tth111I GACNNNGTC 2 cut(s) 1802, 2063
VneI GTGCAC 2 cut(s) 1421, 2314
VpaK11BI GGWCC 4 cut(s) 614, 1734, 1804, 2396
VspI ATTAAT 1 cut(s) 1655
XagI CCTNNNNNAGG 1 cut(s) 1065
XapI RAATTY 6 cut(s) 922, 946, 1863, 1873, 1943, 2372
XbaI TCTAGA 1 cut(s) 2482
XceI RCATGY 1 cut(s) 2255
XmaJI CCTAGG 1 cut(s) 2048
XspI CTAG 5 cut(s) 638, 2049, 2106, 2478, 2483
ZraI GACGTC 1 cut(s) 1468
ZrmI AGTACT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.