Staphylococcal nuclease domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g14720 |
| rosa_chinensis | RchiOBHm_Chr6g0309151 |
| rosa_laevigata | RLG00000010586 |
| rosa_multiflora | Rmu_sc0020102.1_g000004 |
| rosa_rugosa | Rorug06G0370100 |
| rosa_samantha | Rh6AG482900 Rh6BG492000 Rh6CG496700 Rh6DG483600 |
| rosa_wichuraiana | Rw6G042050 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 1396, 2130 |
| AatII | GACGTC | 1 cut(s) | 1125 |
| AccB1I | GGYRCC | 2 cut(s) | 50, 238 |
| AccBSI | CCGCTC | 1 cut(s) | 670 |
| AccII | CGCG | 4 cut(s) | 56, 1263, 1777, 2078 |
| AccIII | TCCGGA | 1 cut(s) | 196 |
| AciI | CCGC | 7 cut(s) | 54, 56, 502, 670, 1182, 2078, 2203 |
| AclI | AACGTT | 1 cut(s) | 921 |
| AclWI | GGATC | 3 cut(s) | 12, 874, 1453 |
| AcoI | YGGCCR | 3 cut(s) | 1104, 1468, 1992 |
| AcsI | RAATTY | 6 cut(s) | 577, 601, 1518, 1528, 1598, 2027 |
| AcuI | CTGAAG | 1 cut(s) | 2099 |
| AcvI | CACGTG | 1 cut(s) | 749 |
| AcyI | GRCGYC | 3 cut(s) | 239, 787, 1122 |
| AfaI | GTAC | 3 cut(s) | 462, 564, 2167 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 707, 722, 913, 1445, 1709, 1924 |
| AflIII | ACRYGT | 1 cut(s) | 1906 |
| AjnI | CCWGG | 6 cut(s) | 46, 906, 1876, 2040, 2181, 2205 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 98, 130, 783, 815 |
| AleI | CACNNNNGTG | 1 cut(s) | 1994 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1970, 2002 |
| Alw21I | GWGCWC | 4 cut(s) | 41, 1080, 1973, 2257 |
| Alw26I | GTCTC | 8 cut(s) | 92, 312, 390, 399, 1113, 1208, 1334, 2166 |
| Alw44I | GTGCAC | 2 cut(s) | 1076, 1969 |
| AlwI | GGATC | 3 cut(s) | 12, 874, 1453 |
| Aor13HI | TCCGGA | 1 cut(s) | 196 |
| AoxI | GGCC | 8 cut(s) | 826, 1065, 1104, 1420, 1468, 1847, 1992, 2038 |
| ApaLI | GTGCAC | 2 cut(s) | 1076, 1969 |
| ApoI | RAATTY | 6 cut(s) | 577, 601, 1518, 1528, 1598, 2027 |
| AseI | ATTAAT | 1 cut(s) | 1310 |
| AspA2I | CCTAGG | 1 cut(s) | 1703 |
| AspLEI | GCGC | 3 cut(s) | 241, 1028, 1777 |
| AspS9I | GGNCC | 3 cut(s) | 1066, 1389, 2051 |
| AsuC2I | CCSGG | 2 cut(s) | 398, 1257 |
| AsuHPI | GGTGA | 3 cut(s) | 497, 737, 1724 |
| AvaII | GGWCC | 2 cut(s) | 1389, 2051 |
| AvrII | CCTAGG | 1 cut(s) | 1703 |
| BaeGI | GKGCMC | 2 cut(s) | 1080, 1973 |
| BalI | TGGCCA | 1 cut(s) | 1470 |
| BanI | GGYRCC | 2 cut(s) | 50, 238 |
| BanII | GRGCYC | 2 cut(s) | 1272, 2257 |
| BauI | CACGAG | 1 cut(s) | 309 |
| BbrPI | CACGTG | 1 cut(s) | 749 |
| BbsI | GAAGAC | 1 cut(s) | 113 |
| Bbv12I | GWGCWC | 4 cut(s) | 41, 1080, 1973, 2257 |
| BbvCI | CCTCAGC | 5 cut(s) | 542, 767, 885, 912, 1178 |
| BccI | CCATC | 6 cut(s) | 161, 395, 475, 700, 1138, 1460 |
| BceAI | ACGGC | 5 cut(s) | 357, 1119, 1862, 1979, 2007 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1613, 1647 |
| BciT130I | CCWGG | 6 cut(s) | 48, 908, 1878, 2042, 2183, 2207 |
| BclI | TGATCA | 1 cut(s) | 2236 |
| BcnI | CCSGG | 2 cut(s) | 398, 1257 |
| BcoDI | GTCTC | 8 cut(s) | 92, 312, 390, 399, 1113, 1208, 1334, 2166 |
| BfaI | CTAG | 5 cut(s) | 284, 1704, 1761, 2130, 2135 |
| BfmI | CTRYAG | 2 cut(s) | 513, 1158 |
| BfoI | RGCGCY | 2 cut(s) | 242, 1029 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 59 |
| BlnI | CCTAGG | 1 cut(s) | 1703 |
| BlpI | GCTNAGC | 2 cut(s) | 927, 1887 |
| Bme1390I | CCNGG | 8 cut(s) | 48, 398, 908, 1257, 1878, 2042, 2183, 2207 |
| Bme18I | GGWCC | 2 cut(s) | 1389, 2051 |
| BmgT120I | GGNCC | 3 cut(s) | 1066, 1389, 2051 |
| BmiI | GGNNCC | 7 cut(s) | 45, 52, 240, 1068, 1390, 1754, 2047 |
| BmrFI | CCNGG | 8 cut(s) | 48, 398, 908, 1257, 1878, 2042, 2183, 2207 |
| BmsI | GCATC | 5 cut(s) | 71, 481, 826, 991, 1681 |
| BpiI | GAAGAC | 1 cut(s) | 113 |
| BpmI | CTGGAG | 3 cut(s) | 55, 449, 684 |
| Bpu10I | CCTNAGC | 5 cut(s) | 542, 767, 885, 912, 1178 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 927, 1887 |
| BpuEI | CTTGAG | 2 cut(s) | 491, 2191 |
| BpuMI | CCSGG | 2 cut(s) | 398, 1257 |
| BsaAI | YACGTR | 1 cut(s) | 749 |
| BsaHI | GRCGYC | 3 cut(s) | 239, 787, 1122 |
| BsaI | GGTCTC | 2 cut(s) | 92, 390 |
| BsaJI | CCNNGG | 8 cut(s) | 54, 464, 756, 1059, 1209, 1703, 2041, 2206 |
| BsaWI | WCCGGW | 3 cut(s) | 196, 1241, 2048 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 64, 94, 191, 221, 1919, 1949 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 707, 722, 913, 1445, 1709, 1924 |
| Bse3DI | GCAATG | 1 cut(s) | 961 |
| BseAI | TCCGGA | 1 cut(s) | 196 |
| BseBI | CCWGG | 6 cut(s) | 48, 908, 1878, 2042, 2183, 2207 |
| BseDI | CCNNGG | 8 cut(s) | 54, 464, 756, 1059, 1209, 1703, 2041, 2206 |
| BseGI | GGATG | 5 cut(s) | 62, 406, 1130, 1285, 2217 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 707, 722, 913, 1445, 1709, 1924 |
| BseMI | GCAATG | 1 cut(s) | 961 |
| BseMII | CTCAG | 9 cut(s) | 248, 533, 758, 876, 903, 918, 1192, 1742, 1901 |
| BseRI | GAGGAG | 5 cut(s) | 170, 995, 1943, 1946, 2247 |
| BseSI | GKGCMC | 2 cut(s) | 1080, 1973 |
| BseX3I | CGGCCG | 1 cut(s) | 1992 |
| BseYI | CCCAGC | 1 cut(s) | 568 |
| BsgI | GTGCAG | 3 cut(s) | 1628, 1758, 1857 |
| Bsh1236I | CGCG | 4 cut(s) | 56, 1263, 1777, 2078 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1261, 1995 |
| BshFI | GGCC | 8 cut(s) | 828, 1067, 1106, 1422, 1470, 1849, 1994, 2040 |
| BshNI | GGYRCC | 2 cut(s) | 50, 238 |
| BsiEI | CGRYCG | 2 cut(s) | 1261, 1995 |
| BsiHKAI | GWGCWC | 4 cut(s) | 41, 1080, 1973, 2257 |
| BsiSI | CCGG | 5 cut(s) | 197, 398, 1242, 1257, 2049 |
| BslFI | GGGAC | 5 cut(s) | 1239, 1402, 1634, 1814, 1901 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 707, 722, 913, 1445, 1709, 1924 |
| BsmAI | GTCTC | 8 cut(s) | 92, 312, 390, 399, 1113, 1208, 1334, 2166 |
| BsmBI | CGTCTC | 1 cut(s) | 1113 |
| BsmFI | GGGAC | 5 cut(s) | 1239, 1402, 1634, 1814, 1901 |
| BsnI | GGCC | 8 cut(s) | 828, 1067, 1106, 1422, 1470, 1849, 1994, 2040 |
| Bso31I | GGTCTC | 2 cut(s) | 92, 390 |
| Bsp1286I | GDGCHC | 5 cut(s) | 41, 1080, 1272, 1973, 2257 |
| Bsp13I | TCCGGA | 1 cut(s) | 196 |
| Bsp143I | GATC | 5 cut(s) | 4, 866, 986, 1458, 2236 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 927, 1887 |
| Bsp19I | CCATGG | 1 cut(s) | 464 |
| Bsp68I | TCGCGA | 1 cut(s) | 1263 |
| BspACI | CCGC | 7 cut(s) | 54, 56, 502, 670, 1182, 2078, 2203 |
| BspANI | GGCC | 8 cut(s) | 828, 1067, 1106, 1422, 1470, 1849, 1994, 2040 |
| BspCNI | CTCAG | 9 cut(s) | 247, 534, 759, 877, 904, 919, 1191, 1741, 1900 |
| BspEI | TCCGGA | 1 cut(s) | 196 |
| BspFNI | CGCG | 4 cut(s) | 56, 1263, 1777, 2078 |
| BspHI | TCATGA | 2 cut(s) | 592, 2242 |
| BspLI | GGNNCC | 7 cut(s) | 45, 52, 240, 1068, 1390, 1754, 2047 |
| BspMAI | CTGCAG | 2 cut(s) | 517, 1162 |
| BspPI | GGATC | 3 cut(s) | 12, 874, 1453 |
| BspT107I | GGYRCC | 2 cut(s) | 50, 238 |
| BspTNI | GGTCTC | 2 cut(s) | 92, 390 |
| BsrBI | CCGCTC | 1 cut(s) | 670 |
| BsrDI | GCAATG | 1 cut(s) | 961 |
| BssECI | CCNNGG | 8 cut(s) | 54, 464, 756, 1059, 1209, 1703, 2041, 2206 |
| BssMI | GATC | 5 cut(s) | 4, 866, 986, 1458, 2236 |
| BssNI | GRCGYC | 3 cut(s) | 239, 787, 1122 |
| BssSI | CACGAG | 1 cut(s) | 309 |
| BssT1I | CCWWGG | 5 cut(s) | 464, 756, 1059, 1209, 1703 |
| Bst2BI | CACGAG | 1 cut(s) | 309 |
| Bst2UI | CCWGG | 6 cut(s) | 48, 908, 1878, 2042, 2183, 2207 |
| Bst4CI | ACNGT | 7 cut(s) | 43, 616, 1345, 1615, 1915, 1986, 2096 |
| Bst6I | CTCTTC | 4 cut(s) | 1622, 1864, 2078, 2141 |
| BstACI | GRCGYC | 3 cut(s) | 239, 787, 1122 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1691 |
| BstBAI | YACGTR | 1 cut(s) | 749 |
| BstC8I | GCNNGC | 5 cut(s) | 134, 735, 1420, 1653, 2278 |
| BstDSI | CCRYGG | 2 cut(s) | 54, 464 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 720 |
| BstF5I | GGATG | 5 cut(s) | 62, 406, 1130, 1285, 2217 |
| BstFNI | CGCG | 4 cut(s) | 56, 1263, 1777, 2078 |
| BstH2I | RGCGCY | 2 cut(s) | 242, 1029 |
| BstHHI | GCGC | 3 cut(s) | 241, 1028, 1777 |
| BstKTI | GATC | 5 cut(s) | 7, 869, 989, 1461, 2239 |
| BstMAI | GTCTC | 8 cut(s) | 92, 312, 390, 399, 1113, 1208, 1334, 2166 |
| BstMBI | GATC | 5 cut(s) | 4, 866, 986, 1458, 2236 |
| BstMCI | CGRYCG | 2 cut(s) | 1261, 1995 |
| BstNI | CCWGG | 6 cut(s) | 48, 908, 1878, 2042, 2183, 2207 |
| BstNSI | RCATGY | 3 cut(s) | 945, 1221, 1910 |
| BstSCI | CCNGG | 8 cut(s) | 46, 396, 906, 1255, 1876, 2040, 2181, 2205 |
| BstSFI | CTRYAG | 2 cut(s) | 513, 1158 |
| BstSLI | GKGCMC | 2 cut(s) | 1080, 1973 |
| BstUI | CGCG | 4 cut(s) | 56, 1263, 1777, 2078 |
| BstV2I | GAAGAC | 1 cut(s) | 113 |
| BstX2I | RGATCY | 1 cut(s) | 1458 |
| BstYI | RGATCY | 1 cut(s) | 1458 |
| BstZI | CGGCCG | 1 cut(s) | 1992 |
| BsuRI | GGCC | 8 cut(s) | 828, 1067, 1106, 1422, 1470, 1849, 1994, 2040 |
| BtgI | CCRYGG | 2 cut(s) | 54, 464 |
| BtgZI | GCGATG | 1 cut(s) | 1278 |
| BtsCI | GGATG | 5 cut(s) | 62, 406, 1130, 1285, 2217 |
| BtsI | GCAGTG | 1 cut(s) | 1456 |
| BtsIMutI | CAGTG | 1 cut(s) | 1456 |
| BtuMI | TCGCGA | 1 cut(s) | 1263 |
| Cac8I | GCNNGC | 5 cut(s) | 134, 735, 1420, 1653, 2278 |
| CciI | TCATGA | 2 cut(s) | 592, 2242 |
| CfoI | GCGC | 3 cut(s) | 241, 1028, 1777 |
| Cfr13I | GGNCC | 3 cut(s) | 1066, 1389, 2051 |
| Cfr42I | CCGCGG | 1 cut(s) | 57 |
| CseI | GACGC | 1 cut(s) | 795 |
| CsiI | ACCWGGT | 1 cut(s) | 1876 |
| Csp6I | GTAC | 3 cut(s) | 461, 563, 2166 |
| CviQI | GTAC | 3 cut(s) | 461, 563, 2166 |
| DinI | GGCGCC | 1 cut(s) | 240 |
| DpnI | GATC | 5 cut(s) | 6, 868, 988, 1460, 2238 |
| DpnII | GATC | 5 cut(s) | 4, 866, 986, 1458, 2236 |
| DraI | TTTAAA | 1 cut(s) | 1195 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1396, 2130 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1396, 2130 |
| EaeI | YGGCCR | 3 cut(s) | 1104, 1468, 1992 |
| EagI | CGGCCG | 1 cut(s) | 1992 |
| Eam1104I | CTCTTC | 4 cut(s) | 1622, 1864, 2078, 2141 |
| EarI | CTCTTC | 4 cut(s) | 1622, 1864, 2078, 2141 |
| EciI | GGCGGA | 1 cut(s) | 2192 |
| Ecl136II | GAGCTC | 1 cut(s) | 2255 |
| EclXI | CGGCCG | 1 cut(s) | 1992 |
| Eco130I | CCWWGG | 5 cut(s) | 464, 756, 1059, 1209, 1703 |
| Eco24I | GRGCYC | 2 cut(s) | 1272, 2257 |
| Eco31I | GGTCTC | 2 cut(s) | 92, 390 |
| Eco47I | GGWCC | 2 cut(s) | 1389, 2051 |
| Eco52I | CGGCCG | 1 cut(s) | 1992 |
| Eco53kI | GAGCTC | 1 cut(s) | 2255 |
| Eco57I | CTGAAG | 1 cut(s) | 2099 |
| Eco72I | CACGTG | 1 cut(s) | 749 |
| EcoICRI | GAGCTC | 1 cut(s) | 2255 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 720 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1066 |
| EcoRII | CCWGG | 6 cut(s) | 46, 906, 1876, 2040, 2181, 2205 |
| EcoT14I | CCWWGG | 5 cut(s) | 464, 756, 1059, 1209, 1703 |
| EcoT38I | GRGCYC | 2 cut(s) | 1272, 2257 |
| EgeI | GGCGCC | 1 cut(s) | 240 |
| EheI | GGCGCC | 1 cut(s) | 240 |
| ErhI | CCWWGG | 5 cut(s) | 464, 756, 1059, 1209, 1703 |
| Esp3I | CGTCTC | 1 cut(s) | 1113 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1407, 1439, 1678, 1710 |
| FaqI | GGGAC | 5 cut(s) | 1239, 1402, 1634, 1814, 1901 |
| FauNDI | CATATG | 1 cut(s) | 742 |
| FbaI | TGATCA | 1 cut(s) | 2236 |
| FokI | GGATG | 5 cut(s) | 49, 413, 1117, 1292, 2224 |
| FriOI | GRGCYC | 2 cut(s) | 1272, 2257 |
| FspBI | CTAG | 5 cut(s) | 284, 1704, 1761, 2130, 2135 |
| GlaI | GCGC | 3 cut(s) | 240, 1027, 1776 |
| GsaI | CCCAGC | 1 cut(s) | 572 |
| GsuI | CTGGAG | 3 cut(s) | 55, 449, 684 |
| HaeII | RGCGCY | 2 cut(s) | 242, 1029 |
| HaeIII | GGCC | 8 cut(s) | 828, 1067, 1106, 1422, 1470, 1849, 1994, 2040 |
| HapII | CCGG | 5 cut(s) | 197, 398, 1242, 1257, 2049 |
| HgaI | GACGC | 1 cut(s) | 795 |
| HhaI | GCGC | 3 cut(s) | 241, 1028, 1777 |
| Hin1I | GRCGYC | 3 cut(s) | 239, 787, 1122 |
| Hin6I | GCGC | 3 cut(s) | 239, 1026, 1775 |
| HinP1I | GCGC | 3 cut(s) | 239, 1026, 1775 |
| HindIII | AAGCTT | 1 cut(s) | 1921 |
| HpaII | CCGG | 5 cut(s) | 197, 398, 1242, 1257, 2049 |
| HphI | GGTGA | 3 cut(s) | 497, 737, 1724 |
| Hpy166II | GTNNAC | 3 cut(s) | 1078, 1971, 1989 |
| Hpy188I | TCNGA | 7 cut(s) | 378, 412, 702, 1279, 2020, 2118, 2236 |
| Hpy8I | GTNNAC | 3 cut(s) | 1078, 1971, 1989 |
| HpyCH4III | ACNGT | 7 cut(s) | 43, 616, 1345, 1615, 1915, 1986, 2096 |
| HpyCH4IV | ACGT | 3 cut(s) | 748, 921, 1122 |
| HpySE526I | ACGT | 3 cut(s) | 748, 921, 1122 |
| Hsp92I | GRCGYC | 3 cut(s) | 239, 787, 1122 |
| HspAI | GCGC | 3 cut(s) | 239, 1026, 1775 |
| KasI | GGCGCC | 1 cut(s) | 238 |
| Kpn2I | TCCGGA | 1 cut(s) | 196 |
| Ksp22I | TGATCA | 1 cut(s) | 2236 |
| KspI | CCGCGG | 1 cut(s) | 57 |
| Kzo9I | GATC | 5 cut(s) | 4, 866, 986, 1458, 2236 |
| LmnI | GCTCC | 3 cut(s) | 36, 430, 2260 |
| LweI | GCATC | 5 cut(s) | 71, 481, 826, 991, 1681 |
| MabI | ACCWGGT | 1 cut(s) | 1876 |
| MaeI | CTAG | 5 cut(s) | 284, 1704, 1761, 2130, 2135 |
| MaeII | ACGT | 3 cut(s) | 748, 921, 1122 |
| MaeIII | GTNAC | 5 cut(s) | 1451, 1712, 1842, 1909, 2065 |
| MalI | GATC | 5 cut(s) | 6, 868, 988, 1460, 2238 |
| MbiI | CCGCTC | 1 cut(s) | 670 |
| MboI | GATC | 5 cut(s) | 4, 866, 986, 1458, 2236 |
| MfeI | CAATTG | 2 cut(s) | 1287, 1401 |
| MflI | RGATCY | 1 cut(s) | 1458 |
| MhlI | GDGCHC | 5 cut(s) | 41, 1080, 1272, 1973, 2257 |
| MlsI | TGGCCA | 1 cut(s) | 1470 |
| MluNI | TGGCCA | 1 cut(s) | 1470 |
| Mly113I | GGCGCC | 1 cut(s) | 239 |
| MlyI | GAGTC | 7 cut(s) | 67, 103, 314, 401, 684, 1391, 2240 |
| Mox20I | TGGCCA | 1 cut(s) | 1470 |
| MroI | TCCGGA | 1 cut(s) | 196 |
| MscI | TGGCCA | 1 cut(s) | 1470 |
| MseI | TTAA | 7 cut(s) | 15, 879, 1194, 1310, 1562, 1698, 1854 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1994 |
| Msp20I | TGGCCA | 1 cut(s) | 1470 |
| MspA1I | CMGCKG | 4 cut(s) | 56, 502, 737, 1182 |
| MspI | CCGG | 5 cut(s) | 197, 398, 1242, 1257, 2049 |
| MspR9I | CCNGG | 8 cut(s) | 48, 398, 908, 1257, 1878, 2042, 2183, 2207 |
| MunI | CAATTG | 2 cut(s) | 1287, 1401 |
| MvaI | CCWGG | 6 cut(s) | 48, 908, 1878, 2042, 2183, 2207 |
| MvnI | CGCG | 4 cut(s) | 56, 1263, 1777, 2078 |
| NarI | GGCGCC | 1 cut(s) | 239 |
| NciI | CCSGG | 2 cut(s) | 398, 1257 |
| NcoI | CCATGG | 1 cut(s) | 464 |
| NdeI | CATATG | 1 cut(s) | 742 |
| NdeII | GATC | 5 cut(s) | 4, 866, 986, 1458, 2236 |
| NlaIV | GGNNCC | 7 cut(s) | 45, 52, 240, 1068, 1390, 1754, 2047 |
| NmuCI | GTSAC | 2 cut(s) | 1451, 1712 |
| NruI | TCGCGA | 1 cut(s) | 1263 |
| NspI | RCATGY | 3 cut(s) | 945, 1221, 1910 |
| OliI | CACNNNNGTG | 1 cut(s) | 1994 |
| PagI | TCATGA | 2 cut(s) | 592, 2242 |
| PciI | ACATGT | 1 cut(s) | 1906 |
| PfeI | GAWTC | 5 cut(s) | 271, 659, 842, 1019, 1673 |
| PflFI | GACNNNGTC | 1 cut(s) | 1718 |
| PfoI | TCCNGGA | 1 cut(s) | 2181 |
| PleI | GAGTC | 7 cut(s) | 67, 103, 313, 401, 683, 1390, 2239 |
| PluTI | GGCGCC | 1 cut(s) | 242 |
| PmaCI | CACGTG | 1 cut(s) | 749 |
| PmlI | CACGTG | 1 cut(s) | 749 |
| PpsI | GAGTC | 7 cut(s) | 67, 103, 313, 401, 683, 1390, 2239 |
| Ppu21I | YACGTR | 1 cut(s) | 749 |
| PscI | ACATGT | 1 cut(s) | 1906 |
| PshBI | ATTAAT | 1 cut(s) | 1310 |
| Psp124BI | GAGCTC | 1 cut(s) | 2257 |
| Psp1406I | AACGTT | 1 cut(s) | 921 |
| Psp6I | CCWGG | 6 cut(s) | 46, 906, 1876, 2040, 2181, 2205 |
| PspCI | CACGTG | 1 cut(s) | 749 |
| PspFI | CCCAGC | 1 cut(s) | 568 |
| PspGI | CCWGG | 6 cut(s) | 46, 906, 1876, 2040, 2181, 2205 |
| PspN4I | GGNNCC | 7 cut(s) | 45, 52, 240, 1068, 1390, 1754, 2047 |
| PspPI | GGNCC | 3 cut(s) | 1066, 1389, 2051 |
| PstI | CTGCAG | 2 cut(s) | 517, 1162 |
| PsuI | RGATCY | 1 cut(s) | 1458 |
| PsyI | GACNNNGTC | 1 cut(s) | 1718 |
| PvuII | CAGCTG | 1 cut(s) | 737 |
| RruI | TCGCGA | 1 cut(s) | 1263 |
| RsaI | GTAC | 3 cut(s) | 462, 564, 2167 |
| RsaNI | GTAC | 3 cut(s) | 461, 563, 2166 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1994 |
| SacI | GAGCTC | 1 cut(s) | 2257 |
| SacII | CCGCGG | 1 cut(s) | 57 |
| SaqAI | TTAA | 7 cut(s) | 15, 879, 1194, 1310, 1562, 1698, 1854 |
| Sau3AI | GATC | 5 cut(s) | 4, 866, 986, 1458, 2236 |
| Sau96I | GGNCC | 3 cut(s) | 1066, 1389, 2051 |
| SchI | GAGTC | 7 cut(s) | 67, 103, 314, 401, 684, 1391, 2240 |
| ScrFI | CCNGG | 8 cut(s) | 48, 398, 908, 1257, 1878, 2042, 2183, 2207 |
| SduI | GDGCHC | 5 cut(s) | 41, 1080, 1272, 1973, 2257 |
| SexAI | ACCWGGT | 1 cut(s) | 1876 |
| SfaNI | GCATC | 5 cut(s) | 71, 481, 826, 991, 1681 |
| SfcI | CTRYAG | 2 cut(s) | 513, 1158 |
| SfoI | GGCGCC | 1 cut(s) | 240 |
| Sfr303I | CCGCGG | 1 cut(s) | 57 |
| SgrBI | CCGCGG | 1 cut(s) | 57 |
| SinI | GGWCC | 2 cut(s) | 1389, 2051 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1994 |
| SmlI | CTYRAG | 2 cut(s) | 506, 2170 |
| SmoI | CTYRAG | 2 cut(s) | 506, 2170 |
| SsiI | CCGC | 7 cut(s) | 54, 56, 502, 670, 1182, 2078, 2203 |
| SspDI | GGCGCC | 1 cut(s) | 238 |
| SspMI | CTAG | 5 cut(s) | 284, 1704, 1761, 2130, 2135 |
| SstI | GAGCTC | 1 cut(s) | 2257 |
| StyD4I | CCNGG | 8 cut(s) | 46, 396, 906, 1255, 1876, 2040, 2181, 2205 |
| StyI | CCWWGG | 5 cut(s) | 464, 756, 1059, 1209, 1703 |
| TaaI | ACNGT | 7 cut(s) | 43, 616, 1345, 1615, 1915, 1986, 2096 |
| TaiI | ACGT | 3 cut(s) | 751, 924, 1125 |
| TaqI | TCGA | 2 cut(s) | 153, 686 |
| TauI | GCSGC | 2 cut(s) | 56, 505 |
| TfiI | GAWTC | 5 cut(s) | 271, 659, 842, 1019, 1673 |
| Tru1I | TTAA | 7 cut(s) | 15, 879, 1194, 1310, 1562, 1698, 1854 |
| Tru9I | TTAA | 7 cut(s) | 15, 879, 1194, 1310, 1562, 1698, 1854 |
| TscAI | CASTG | 1 cut(s) | 1456 |
| TseFI | GTSAC | 2 cut(s) | 1451, 1712 |
| Tsp45I | GTSAC | 2 cut(s) | 1451, 1712 |
| TspDTI | ATGAA | 4 cut(s) | 119, 581, 1296, 1505 |
| TspGWI | ACGGA | 1 cut(s) | 1371 |
| TspRI | CASTG | 1 cut(s) | 1456 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1718 |
| VneI | GTGCAC | 2 cut(s) | 1076, 1969 |
| VpaK11BI | GGWCC | 2 cut(s) | 1389, 2051 |
| VspI | ATTAAT | 1 cut(s) | 1310 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 720 |
| XapI | RAATTY | 6 cut(s) | 577, 601, 1518, 1528, 1598, 2027 |
| XbaI | TCTAGA | 1 cut(s) | 2134 |
| XceI | RCATGY | 3 cut(s) | 945, 1221, 1910 |
| XmaJI | CCTAGG | 1 cut(s) | 1703 |
| XspI | CTAG | 5 cut(s) | 284, 1704, 1761, 2130, 2135 |
| ZraI | GACGTC | 1 cut(s) | 1123 |