FvH4_4g16100

RNA pol II accessory factor, Cdc73 family, C-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0011953
Physical Location & Seq
Reverse (-)
19986025 .. 19990250
4226 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g16100.t1

Sequence Viewer

Length: 1245 bp
ATGGACCCTCTCTCCGCCCTCCGCGACTTCACAATCCGCGGCGAGCTCGACAAGATCGTCCGCGTCAACGACGAGCTCCGCTTGGGCTCCGACTACTCCTTCCCTTGCTCCGCCGAGACCGCCTACCGCTCCAAGCAAGGCAACCTCTACACCCTCGAAACCCTCCTCCATTACGTCAACAACCACCACCTTAAGCACACCGAGTACCTCATCAACGCCCGCGCCCAGATGATCCCCTGCGTCACCTTCCCCGATCGGAAACCCCTCCTCGATTACCTCACCGGCAAGATCTCCTCCTCCGACTCCATCGAGTTCGTCCTCCCTCAAAACCCTAAAGTCCCCGATTTGCCCCTCCACAACAACGACTTCCCCTTCTCCGAAAACGACGTCGCTCGCCACCACACGCCTGATCAGAATCACAACAACATCAATGGCTTCACCGTTTTGAAAGAGGTTGAGGCGCCGGTGGACTACATGTCGTTGATTTACGGCAGCGAGAGGCCGCTGAAGGACCGGGAGGAGCTGCTGGAGTGCAAAGGGAGGAACTTTTACGGCGTGCTGACGGCGGCGACGAAGAGAGAGGAGGAACGGCAGCGCATTGAGTCGCAGCAGAGGAAGGATGGGCTGGTGGCCAAGAGCAGGTTAATGGGCTCCGACGACCGGGGAATGGCGGGTTATGGTGACGAAATGGGCTATGACCAGGCGCCGAAGCCGAAGATGCATCTGAAGGGTGGGAAGATTGGGGAAGGCGTGCCTATAATTCTGGTGCCGAGTGCATTCCAGACGCTGATTACGATTTACAATGTGAAGGAGTTTCTGGAGGACGGGGTTTATATACCGACCGATGTGAAGGTGAAGCAGATGAAGGGGGCTAAGCCGGACTGTGTGACTGTGCAGAAGAAGTTCAGCAGGGATAGGGATAGAGTGGTGACGGCATATGAGGTTAGGGATAAGCCGTCGGCGCTGAAGACTGAGGATTGGGATAGGGTGGTGGCGGTTTTCGTGTTGGGGAAGGAGTGGCAGTTTAAGGACTGGCCTTTTAAGGATCATGTGGAGATTTTCAATAAGATTATGGGATTTTTCATGCGGTTTGAAGATGATAGTGTTGAGTCTGCAAAGATTGTGAAGCAGTGGAATGTGAAGATCATCTCAATTAGCAAGAATAAGCGACACCAAGATAGAGCTGCAGCACTGGAGGTGTGGGATCGGCTAGAAGAGTTTGTGCGGTCACGCTCACATTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000428 GO:0000988 GO:0000989 GO:0000993 GO:0001076 GO:0001098 GO:0001099 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0008213 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016071 GO:0016569 GO:0016570 GO:0016571 GO:0016591 GO:0016593 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0030880 GO:0031123 GO:0031124 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0034243 GO:0034402 GO:0034622 GO:0034641 GO:0034968 GO:0036211 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051276 GO:0051568 GO:0055029 GO:0060255 GO:0061458 GO:0061695 GO:0065003 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0140110 GO:1901360 GO:1901564 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDC73_C CDC73_N

Protein Analysis

415

Amino Acids

47.71

Weight (kDa)

6.88

Isoelectric Point (pI)

38.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDC73_N PF16050 2 - 106 2.8e-19 Paf1 complex subunit CDC73 N-terminal
CDC73_C PF05179 251 - 407 4.1e-51 RNA pol II accessory factor, Cdc73 family, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011953)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22590
fragaria_vesca FvH4_4g16100 FvH4_4g16100
malus_domestica MD13G1196100.v1.1 MD16G1196600.v1.1
prunus_persica Prupe.1G016800_v2.0.a1
pyrus_communis pycom13g16820 pycom16g16540
rosa_chinensis RchiOBHm_Chr4g0415641
rosa_laevigata RLG00000008053
rosa_multiflora Rmu_sc0001194.1_g000007 Rmu_sc0004599.1_g000013
rosa_roxburghii Rroxscaffold_5G00359440
rosa_rugosa Rorug04G0136100
rosa_samantha Rh4AG196800 Rh4BG195400 Rh4CG207600 Rh4DG194700
rosa_wichuraiana Rw4G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 56
AatII GACGTC 1 cut(s) 390
Acc36I ACCTGC 1 cut(s) 630
AccB1I GGYRCC 3 cut(s) 460, 703, 766
AccBSI CCGCTC 1 cut(s) 129
AccII CGCG 4 cut(s) 24, 39, 63, 222
AclWI GGATC 3 cut(s) 226, 1053, 1212
AcoI YGGCCR 1 cut(s) 630
AcuI CTGAAG 3 cut(s) 527, 746, 986
AcyI GRCGYC 3 cut(s) 387, 461, 704
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 3 cut(s) 639, 660, 667
AflII CTTAAG 1 cut(s) 191
AflIII ACRYGT 1 cut(s) 474
AgsI TTSAA 3 cut(s) 448, 1063, 1094
AhdI GACNNNNNGTC 1 cut(s) 475
AjnI CCWGG 1 cut(s) 699
AluBI AGCT 4 cut(s) 46, 76, 523, 1184
AluI AGCT 4 cut(s) 46, 76, 523, 1184
Alw21I GWGCWC 2 cut(s) 48, 78
Alw26I GTCTC 1 cut(s) 110
AlwI GGATC 3 cut(s) 226, 1053, 1212
AlwNI CAGNNNCTG 1 cut(s) 787
AoxI GGCC 3 cut(s) 500, 630, 1034
ApeKI GCWGC 6 cut(s) 492, 523, 592, 607, 1184, 1187
ArsI GACNNNNNNTTYG 2 cut(s) 372, 404
Asp700I GAANNNNTTC 1 cut(s) 902
AspLEI GCGC 5 cut(s) 224, 463, 597, 706, 964
AspS9I GGNCC 2 cut(s) 4, 511
AsuC2I CCSGG 2 cut(s) 515, 662
AsuHPI GGTGA 6 cut(s) 235, 271, 430, 692, 865, 940
AvaII GGWCC 2 cut(s) 4, 511
BalI TGGCCA 1 cut(s) 632
BanI GGYRCC 3 cut(s) 460, 703, 766
BanII GRGCYC 4 cut(s) 48, 78, 89, 653
BbsI GAAGAC 1 cut(s) 974
Bbv12I GWGCWC 2 cut(s) 48, 78
BbvI GCAGC 6 cut(s) 504, 510, 604, 619, 1171, 1199
BccI CCATC 2 cut(s) 314, 614
BceAI ACGGC 6 cut(s) 505, 568, 579, 605, 940, 948
BciT130I CCWGG 1 cut(s) 701
BclI TGATCA 1 cut(s) 409
BcnI CCSGG 2 cut(s) 515, 662
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 1 cut(s) 1211
BfmI CTRYAG 1 cut(s) 1185
BfoI RGCGCY 3 cut(s) 464, 707, 965
BfrI CTTAAG 1 cut(s) 191
BfuAI ACCTGC 1 cut(s) 630
BglII AGATCT 1 cut(s) 288
BisI GCNGC 9 cut(s) 40, 493, 503, 524, 567, 593, 608, 1185, 1188
BlpI GCTNAGC 1 cut(s) 873
BlsI GCNGC 9 cut(s) 41, 494, 504, 525, 568, 594, 609, 1186, 1189
Bme1390I CCNGG 3 cut(s) 515, 662, 701
Bme18I GGWCC 2 cut(s) 4, 511
BmeRI GACNNNNNGTC 1 cut(s) 475
BmgT120I GGNCC 2 cut(s) 4, 511
BmiI GGNNCC 6 cut(s) 6, 88, 462, 652, 705, 768
BmrFI CCNGG 3 cut(s) 515, 662, 701
BmsI GCATC 2 cut(s) 708, 730
BpiI GAAGAC 1 cut(s) 974
BpmI CTGGAG 3 cut(s) 548, 839, 1214
Bpu1102I GCTNAGC 1 cut(s) 873
BpuMI CCSGG 2 cut(s) 515, 662
BsaBI GATNNNNATC 1 cut(s) 414
BsaHI GRCGYC 3 cut(s) 387, 461, 704
BsaI GGTCTC 1 cut(s) 110
BsaJI CCNNGG 2 cut(s) 37, 661
BsaXI ACNNNNNCTCC 3 cut(s) 26, 1007, 1037
Bsc4I CCNNNNNNNGG 3 cut(s) 639, 660, 667
Bse118I RCCGGY 2 cut(s) 281, 463
Bse1I ACTGG 2 cut(s) 1037, 1197
Bse8I GATNNNNATC 1 cut(s) 414
BseBI CCWGG 1 cut(s) 701
BseDI CCNNGG 2 cut(s) 37, 661
BseGI GGATG 1 cut(s) 625
BseJI GATNNNNATC 1 cut(s) 414
BseLI CCNNNNNNNGG 3 cut(s) 639, 660, 667
BseMII CTCAG 1 cut(s) 963
BseNI ACTGG 2 cut(s) 1037, 1197
BseRI GAGGAG 6 cut(s) 155, 257, 283, 286, 533, 596
BseXI GCAGC 6 cut(s) 504, 510, 604, 619, 1171, 1199
BsgI GTGCAG 1 cut(s) 914
Bsh1236I CGCG 4 cut(s) 24, 39, 63, 222
Bsh1285I CGRYCG 3 cut(s) 256, 661, 843
BshFI GGCC 3 cut(s) 502, 632, 1036
BshNI GGYRCC 3 cut(s) 460, 703, 766
BsiEI CGRYCG 3 cut(s) 256, 661, 843
BsiHKAI GWGCWC 2 cut(s) 48, 78
BsiSI CCGG 5 cut(s) 282, 464, 514, 661, 878
BslFI GGGAC 1 cut(s) 323
BslI CCNNNNNNNGG 3 cut(s) 639, 660, 667
BsmAI GTCTC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 323
BsmI GAATGC 1 cut(s) 776
BsnI GGCC 3 cut(s) 502, 632, 1036
Bso31I GGTCTC 1 cut(s) 110
Bsp1286I GDGCHC 4 cut(s) 48, 78, 89, 653
Bsp143I GATC 8 cut(s) 54, 231, 253, 288, 409, 1045, 1143, 1204
Bsp1720I GCTNAGC 1 cut(s) 873
BspANI GGCC 3 cut(s) 502, 632, 1036
BspCNI CTCAG 1 cut(s) 964
BspFNI CGCG 4 cut(s) 24, 39, 63, 222
BspLI GGNNCC 6 cut(s) 6, 88, 462, 652, 705, 768
BspMAI CTGCAG 1 cut(s) 1189
BspMI ACCTGC 1 cut(s) 630
BspPI GGATC 3 cut(s) 226, 1053, 1212
BspT107I GGYRCC 3 cut(s) 460, 703, 766
BspTI CTTAAG 1 cut(s) 191
BspTNI GGTCTC 1 cut(s) 110
BsrBI CCGCTC 1 cut(s) 129
BsrFI RCCGGY 2 cut(s) 281, 463
BsrI ACTGG 2 cut(s) 1037, 1197
BssAI RCCGGY 2 cut(s) 281, 463
BssECI CCNNGG 2 cut(s) 37, 661
BssMI GATC 8 cut(s) 54, 231, 253, 288, 409, 1045, 1143, 1204
BssNI GRCGYC 3 cut(s) 387, 461, 704
Bst2UI CCWGG 1 cut(s) 701
Bst4CI ACNGT 3 cut(s) 442, 884, 892
Bst6I CTCTTC 2 cut(s) 569, 1209
BstACI GRCGYC 3 cut(s) 387, 461, 704
BstAFI CTTAAG 1 cut(s) 191
BstC8I GCNNGC 5 cut(s) 44, 220, 394, 557, 752
BstDEI CTNAG 2 cut(s) 873, 972
BstDSI CCRYGG 1 cut(s) 37
BstF5I GGATG 1 cut(s) 625
BstFNI CGCG 4 cut(s) 24, 39, 63, 222
BstH2I RGCGCY 3 cut(s) 464, 707, 965
BstHHI GCGC 5 cut(s) 224, 463, 597, 706, 964
BstKTI GATC 8 cut(s) 57, 234, 256, 291, 412, 1048, 1146, 1207
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 8 cut(s) 54, 231, 253, 288, 409, 1045, 1143, 1204
BstMCI CGRYCG 3 cut(s) 256, 661, 843
BstMWI GCNNNNNNNGC 3 cut(s) 119, 718, 961
BstNI CCWGG 1 cut(s) 701
BstNSI RCATGY 1 cut(s) 478
BstSCI CCNGG 3 cut(s) 513, 660, 699
BstSFI CTRYAG 1 cut(s) 1185
BstUI CGCG 4 cut(s) 24, 39, 63, 222
BstV1I GCAGC 6 cut(s) 504, 510, 604, 619, 1171, 1199
BstV2I GAAGAC 1 cut(s) 974
BstX2I RGATCY 1 cut(s) 288
BstYI RGATCY 1 cut(s) 288
BsuRI GGCC 3 cut(s) 502, 632, 1036
BtgI CCRYGG 1 cut(s) 37
BtsCI GGATG 1 cut(s) 625
BtsI GCAGTG 1 cut(s) 1136
BtsIMutI CAGTG 2 cut(s) 1136, 1190
BveI ACCTGC 1 cut(s) 630
Cac8I GCNNGC 5 cut(s) 44, 220, 394, 557, 752
CaiI CAGNNNCTG 1 cut(s) 787
CfoI GCGC 5 cut(s) 224, 463, 597, 706, 964
Cfr10I RCCGGY 2 cut(s) 281, 463
Cfr13I GGNCC 2 cut(s) 4, 511
Cfr42I CCGCGG 1 cut(s) 40
CseI GACGC 3 cut(s) 52, 229, 793
Csp6I GTAC 1 cut(s) 205
CviAII CATG 3 cut(s) 475, 1049, 1084
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 2 cut(s) 873, 972
DinI GGCGCC 2 cut(s) 462, 705
DpnI GATC 8 cut(s) 56, 233, 255, 290, 411, 1047, 1145, 1206
DpnII GATC 8 cut(s) 54, 231, 253, 288, 409, 1045, 1143, 1204
DrdI GACNNNNNNGTC 1 cut(s) 56
DriI GACNNNNNGTC 1 cut(s) 475
DseDI GACNNNNNNGTC 1 cut(s) 56
EaeI YGGCCR 1 cut(s) 630
Eam1104I CTCTTC 2 cut(s) 569, 1209
Eam1105I GACNNNNNGTC 1 cut(s) 475
EarI CTCTTC 2 cut(s) 569, 1209
EciI GGCGGA 2 cut(s) 4, 100
Ecl136II GAGCTC 2 cut(s) 46, 76
Eco24I GRGCYC 4 cut(s) 48, 78, 89, 653
Eco31I GGTCTC 1 cut(s) 110
Eco47I GGWCC 2 cut(s) 4, 511
Eco53kI GAGCTC 2 cut(s) 46, 76
Eco57I CTGAAG 3 cut(s) 527, 746, 986
EcoICRI GAGCTC 2 cut(s) 46, 76
EcoRII CCWGG 1 cut(s) 699
EcoT22I ATGCAT 1 cut(s) 723
EcoT38I GRGCYC 4 cut(s) 48, 78, 89, 653
EgeI GGCGCC 2 cut(s) 462, 705
EheI GGCGCC 2 cut(s) 462, 705
FaeI CATG 3 cut(s) 478, 1052, 1087
FaqI GGGAC 1 cut(s) 323
FatI CATG 3 cut(s) 474, 1048, 1083
FauI CCCGC 2 cut(s) 227, 664
FauNDI CATATG 1 cut(s) 937
FbaI TGATCA 1 cut(s) 409
Fnu4HI GCNGC 9 cut(s) 40, 493, 503, 524, 567, 593, 608, 1185, 1188
FokI GGATG 1 cut(s) 632
FriOI GRGCYC 4 cut(s) 48, 78, 89, 653
Fsp4HI GCNGC 9 cut(s) 40, 493, 503, 524, 567, 593, 608, 1185, 1188
FspBI CTAG 1 cut(s) 1211
GlaI GCGC 5 cut(s) 223, 462, 596, 705, 963
GluI GCNGC 9 cut(s) 40, 493, 503, 524, 567, 593, 608, 1185, 1188
GsuI CTGGAG 3 cut(s) 548, 839, 1214
HaeII RGCGCY 3 cut(s) 464, 707, 965
HaeIII GGCC 3 cut(s) 502, 632, 1036
HapII CCGG 5 cut(s) 282, 464, 514, 661, 878
HgaI GACGC 3 cut(s) 52, 229, 793
HhaI GCGC 5 cut(s) 224, 463, 597, 706, 964
Hin1I GRCGYC 3 cut(s) 387, 461, 704
Hin1II CATG 3 cut(s) 478, 1052, 1087
Hin6I GCGC 5 cut(s) 222, 461, 595, 704, 962
HinP1I GCGC 5 cut(s) 222, 461, 595, 704, 962
HincII GTYRAC 2 cut(s) 67, 178
HindII GTYRAC 2 cut(s) 67, 178
HinfI GANTC 4 cut(s) 302, 415, 602, 1109
HpaII CCGG 5 cut(s) 282, 464, 514, 661, 878
HphI GGTGA 6 cut(s) 235, 271, 430, 692, 865, 940
Hpy166II GTNNAC 3 cut(s) 67, 178, 469
Hpy188I TCNGA 7 cut(s) 91, 258, 301, 379, 414, 655, 726
Hpy188III TCNNGA 3 cut(s) 781, 818, 1242
Hpy8I GTNNAC 3 cut(s) 67, 178, 469
Hpy99I CGWCG 6 cut(s) 74, 389, 392, 574, 659, 961
HpyCH4III ACNGT 3 cut(s) 442, 884, 892
HpyCH4IV ACGT 2 cut(s) 174, 387
HpyCH4V TGCA 6 cut(s) 534, 721, 776, 895, 1115, 1187
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 718, 961
HpyF3I CTNAG 2 cut(s) 873, 972
HpySE526I ACGT 2 cut(s) 174, 387
Hsp92I GRCGYC 3 cut(s) 387, 461, 704
Hsp92II CATG 3 cut(s) 478, 1052, 1087
HspAI GCGC 5 cut(s) 222, 461, 595, 704, 962
KasI GGCGCC 2 cut(s) 460, 703
Ksp22I TGATCA 1 cut(s) 409
KspI CCGCGG 1 cut(s) 40
Kzo9I GATC 8 cut(s) 54, 231, 253, 288, 409, 1045, 1143, 1204
LmnI GCTCC 6 cut(s) 81, 92, 113, 134, 520, 656
Lsp1109I GCAGC 6 cut(s) 504, 510, 604, 619, 1171, 1199
LweI GCATC 2 cut(s) 708, 730
MaeI CTAG 1 cut(s) 1211
MaeII ACGT 2 cut(s) 174, 387
MaeIII GTNAC 5 cut(s) 241, 680, 886, 928, 1227
MalI GATC 8 cut(s) 56, 233, 255, 290, 411, 1047, 1145, 1206
MbiI CCGCTC 1 cut(s) 129
MboI GATC 8 cut(s) 54, 231, 253, 288, 409, 1045, 1143, 1204
MboII GAAGA 8 cut(s) 586, 727, 748, 910, 979, 1106, 1153, 1226
MflI RGATCY 1 cut(s) 288
MhlI GDGCHC 4 cut(s) 48, 78, 89, 653
MlsI TGGCCA 1 cut(s) 632
MluCI AATT 2 cut(s) 759, 1152
MluNI TGGCCA 1 cut(s) 632
Mly113I GGCGCC 2 cut(s) 461, 704
MlyI GAGTC 3 cut(s) 296, 611, 1118
MmeI TCCRAC 3 cut(s) 114, 324, 678
Mox20I TGGCCA 1 cut(s) 632
Mph1103I ATGCAT 1 cut(s) 723
MroXI GAANNNNTTC 1 cut(s) 902
MscI TGGCCA 1 cut(s) 632
MseI TTAA 4 cut(s) 192, 644, 1026, 1041
Msp20I TGGCCA 1 cut(s) 632
MspA1I CMGCKG 2 cut(s) 39, 505
MspCI CTTAAG 1 cut(s) 191
MspI CCGG 5 cut(s) 282, 464, 514, 661, 878
MspR9I CCNGG 3 cut(s) 515, 662, 701
Mva1269I GAATGC 1 cut(s) 776
MvaI CCWGG 1 cut(s) 701
MvnI CGCG 4 cut(s) 24, 39, 63, 222
MwoI GCNNNNNNNGC 3 cut(s) 119, 718, 961
NarI GGCGCC 2 cut(s) 461, 704
NciI CCSGG 2 cut(s) 515, 662
NdeI CATATG 1 cut(s) 937
NdeII GATC 8 cut(s) 54, 231, 253, 288, 409, 1045, 1143, 1204
NlaIII CATG 3 cut(s) 478, 1052, 1087
NlaIV GGNNCC 6 cut(s) 6, 88, 462, 652, 705, 768
NmeAIII GCCGAG 2 cut(s) 139, 795
NmuCI GTSAC 5 cut(s) 241, 680, 886, 928, 1227
NsiI ATGCAT 1 cut(s) 723
NspI RCATGY 1 cut(s) 478
PciI ACATGT 1 cut(s) 474
PcsI WCGNNNNNNNCGW 3 cut(s) 54, 569, 791
PctI GAATGC 1 cut(s) 776
PdmI GAANNNNTTC 1 cut(s) 902
PfeI GAWTC 1 cut(s) 415
PkrI GCNGC 9 cut(s) 41, 494, 504, 525, 568, 594, 609, 1186, 1189
Ple19I CGATCG 1 cut(s) 256
PleI GAGTC 3 cut(s) 296, 610, 1117
PluTI GGCGCC 2 cut(s) 464, 707
PpsI GAGTC 3 cut(s) 296, 610, 1117
PscI ACATGT 1 cut(s) 474
Psp124BI GAGCTC 2 cut(s) 48, 78
Psp6I CCWGG 1 cut(s) 699
PspGI CCWGG 1 cut(s) 699
PspN4I GGNNCC 6 cut(s) 6, 88, 462, 652, 705, 768
PspPI GGNCC 2 cut(s) 4, 511
PstI CTGCAG 1 cut(s) 1189
PstNI CAGNNNCTG 1 cut(s) 787
PsuI RGATCY 1 cut(s) 288
PvuI CGATCG 1 cut(s) 256
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SacI GAGCTC 2 cut(s) 48, 78
SacII CCGCGG 1 cut(s) 40
SaqAI TTAA 4 cut(s) 192, 644, 1026, 1041
SatI GCNGC 9 cut(s) 40, 493, 503, 524, 567, 593, 608, 1185, 1188
Sau3AI GATC 8 cut(s) 54, 231, 253, 288, 409, 1045, 1143, 1204
Sau96I GGNCC 2 cut(s) 4, 511
SchI GAGTC 3 cut(s) 296, 611, 1118
ScrFI CCNGG 3 cut(s) 515, 662, 701
SduI GDGCHC 4 cut(s) 48, 78, 89, 653
SfaNI GCATC 2 cut(s) 708, 730
SfcI CTRYAG 1 cut(s) 1185
SfoI GGCGCC 2 cut(s) 462, 705
Sfr303I CCGCGG 1 cut(s) 40
SgrAI CRCCGGYG 1 cut(s) 463
SgrBI CCGCGG 1 cut(s) 40
SinI GGWCC 2 cut(s) 4, 511
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 2 cut(s) 759, 1152
SspDI GGCGCC 2 cut(s) 460, 703
SspMI CTAG 1 cut(s) 1211
SstI GAGCTC 2 cut(s) 48, 78
StyD4I CCNGG 3 cut(s) 513, 660, 699
TaaI ACNGT 3 cut(s) 442, 884, 892
TaiI ACGT 2 cut(s) 177, 390
TaqI TCGA 4 cut(s) 48, 156, 270, 309
TaqII GACCGA 1 cut(s) 857
TasI AATT 2 cut(s) 759, 1152
TauI GCSGC 3 cut(s) 42, 505, 569
TfiI GAWTC 1 cut(s) 415
Tru1I TTAA 4 cut(s) 192, 644, 1026, 1041
Tru9I TTAA 4 cut(s) 192, 644, 1026, 1041
TscAI CASTG 2 cut(s) 1136, 1197
TseFI GTSAC 5 cut(s) 241, 680, 886, 928, 1227
TseI GCWGC 6 cut(s) 492, 523, 592, 607, 1184, 1187
Tsp45I GTSAC 5 cut(s) 241, 680, 886, 928, 1227
TspDTI ATGAA 2 cut(s) 878, 1072
TspRI CASTG 2 cut(s) 1136, 1197
Vha464I CTTAAG 1 cut(s) 191
VpaK11BI GGWCC 2 cut(s) 4, 511
XceI RCATGY 1 cut(s) 478
XmnI GAANNNNTTC 1 cut(s) 902
XspI CTAG 1 cut(s) 1211
ZraI GACGTC 1 cut(s) 388
Zsp2I ATGCAT 1 cut(s) 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.