RLG00000008053

RNA pol II accessory factor, Cdc73 family, C-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0011953
Physical Location & Seq
Forward (+)
24984514 .. 24986915
2402 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008053

Sequence Viewer

Length: 1494 bp
ATGGACCCTCTCTCCGCCCTCCGCGACTTCACAATCCGCGGCGAGCTCGACAAGATCGTCCGGGTCAATGACGAGTTCCGGTTCGGCTCCGACTACACCTTCCCTTGCTTCGCCGAGACCGCCTACCGCTCCAAGCAAGGCAATCTCTACACCCTCGAAACCCTCCTCCACTACGTCAACAACCACCACGTCAAGCACACCGAGTACATCCAGAACGCCCGCACCCAGGGGATCCCCACCGTCACTTTCCCCGATCGCAAGCCCCTCCTCGATTACCTCACCGGCAAGATCTCCACCACCGACTCCATCGAATTCGTCCTCCCTCAAAACCCTAAATTCCCCGATTTGCCCCTCAACGACTTCCCCTTCTCGGACAACCAGAACGACGTCGCTCACCACACCCCTGACCACAGCTTCGCCGATTCCAAGGATTTGAACCAGATTGAGGCCCCCGTGGACTACATGTCGTTGATTTACTCCAGCGAGCGGCCGTTGAAGGACCGCGAGGAGCTGCTGGAGTGCAAAGGGAGGAACTTTTACGGCGTTTTGACGGCGGCGACGAAGAGGGAGGAGGAACGACAGCGTATTGAGTCGCAGCAGAGGAAGGATGGGCTGGTGGCCAAGAGTAGGTTAATGGGCTCCGACGATAGGGGCATGGCGGGCTACGGTGACGAATTGGGCTACGACCCGACGCCCAAGCCCAAGATGCATTTGAAGGGAGGGAAGATTGGGGAAGGTGTGCCTATAATTCTGGTGCCGAGTGCGTTCCAGACGCTGATTACGATTTATAATGTGAAGGAGTTTTTGGAAGATGGGGTTTATATACCTACGGATGTGAAGGTGAAGCAGATGAAGGGAGCTAAGCCGGACTGTGTTACTGTGCAGAAGAAGTTTAGCAGGGATAGGGATAGAGTTGTGACGGCTTATGAGGTTAGGGATAAGCCGTCGGCATTGAAGACTGAGGACTGGGATAGGGTGGTGGCGGTTTTCGTGTTGGGGAAGGAGTGGCAGTTCAAGGACTGGCCTTTCAAGGACCATGTGGAGATTTTTAATAAGATTGTGGGATTTTTCATGCGGTTTGAAGATGATAGTGTGGAGTCAGCAAAGATTGTGAAGCAGTGGAATGTGAAGATCATCTCGATTAGCAAGAATAAGCGACACCAAGATAGAGCTGCAGCATTGGAGGTGTGGGATCGGCTAGAAGAGTTTGTGCGGGCCAAAGAGCAAACCTTGTCATACAGCAAATATGTTGAACGGAACCACATGCTATCTTGCAAACCCAGAGAATGGAGACTGAAAAGACTTTGTATTATCAACCTATACATTAAGGTTTGGACACAATTTGATGACAGTAAAGACTTTTCTGTAATGCTGATGGACTTTACTTGGGGTGAAGAGTGCTACGTAATTCACCTGTGGAGTAAAATGTATGTCGCAGCTGCGAATCTTTGGAACATTGTGTGTGGGGTATATATCCTAGCATCACAAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000428 GO:0000988 GO:0000989 GO:0000993 GO:0001076 GO:0001098 GO:0001099 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0008213 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016071 GO:0016569 GO:0016570 GO:0016571 GO:0016591 GO:0016593 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0030880 GO:0031123 GO:0031124 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0034243 GO:0034402 GO:0034622 GO:0034641 GO:0034968 GO:0036211 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051276 GO:0051568 GO:0055029 GO:0060255 GO:0061458 GO:0061695 GO:0065003 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0140110 GO:1901360 GO:1901564 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDC73_C CDC73_N

Protein Analysis

498

Amino Acids

57.74

Weight (kDa)

6.66

Isoelectric Point (pI)

34.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDC73_N PF16050 2 - 105 3.7e-19 Paf1 complex subunit CDC73 N-terminal
CDC73_C PF05179 247 - 403 1e-50 RNA pol II accessory factor, Cdc73 family, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011953)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22590
fragaria_vesca FvH4_4g16100 FvH4_4g16100
malus_domestica MD13G1196100.v1.1 MD16G1196600.v1.1
prunus_persica Prupe.1G016800_v2.0.a1
pyrus_communis pycom13g16820 pycom16g16540
rosa_chinensis RchiOBHm_Chr4g0415641
rosa_laevigata RLG00000008053
rosa_multiflora Rmu_sc0001194.1_g000007 Rmu_sc0004599.1_g000013
rosa_roxburghii Rroxscaffold_5G00359440
rosa_rugosa Rorug04G0136100
rosa_samantha Rh4AG196800 Rh4BG195400 Rh4CG207600 Rh4DG194700
rosa_wichuraiana Rw4G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 789
AasI GACNNNNNNGTC 1 cut(s) 56
AatII GACGTC 1 cut(s) 390
AccB1I GGYRCC 1 cut(s) 754
AccB7I CCANNNNNTGG 1 cut(s) 1287
AccBSI CCGCTC 2 cut(s) 129, 487
AccII CGCG 3 cut(s) 24, 39, 504
AclWI GGATC 3 cut(s) 226, 239, 1200
AcoI YGGCCR 2 cut(s) 488, 618
AcsI RAATTY 2 cut(s) 311, 335
AcyI GRCGYC 2 cut(s) 387, 692
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 7 cut(s) 226, 370, 445, 486, 627, 648, 1287
AflIII ACRYGT 1 cut(s) 462
AgsI TTSAA 8 cut(s) 436, 496, 715, 955, 1015, 1030, 1082, 1253
AhdI GACNNNNNGTC 1 cut(s) 463
AjiI CACGTC 1 cut(s) 190
AjnI CCWGG 1 cut(s) 225
AjuI GAANNNNNNNTTGG 2 cut(s) 788, 820
AloI GAACNNNNNNTCC 2 cut(s) 995, 1027
AluBI AGCT 6 cut(s) 46, 414, 511, 860, 1172, 1439
AluI AGCT 6 cut(s) 46, 414, 511, 860, 1172, 1439
Alw21I GWGCWC 1 cut(s) 48
Alw26I GTCTC 2 cut(s) 110, 1285
AlwI GGATC 3 cut(s) 226, 239, 1200
AlwNI CAGNNNCTG 1 cut(s) 775
AoxI GGCC 5 cut(s) 447, 488, 618, 1022, 1215
ApeKI GCWGC 6 cut(s) 511, 595, 1172, 1175, 1436, 1439
ApoI RAATTY 2 cut(s) 311, 335
ArsI GACNNNNNNTTYG 2 cut(s) 398, 430
AspS9I GGNCC 5 cut(s) 4, 448, 499, 1033, 1215
AsuC2I CCSGG 1 cut(s) 62
AsuHPI GGTGA 6 cut(s) 271, 386, 680, 853, 1403, 1403
AvaII GGWCC 3 cut(s) 4, 499, 1033
BalI TGGCCA 1 cut(s) 620
BamHI GGATCC 1 cut(s) 231
BanI GGYRCC 1 cut(s) 754
BanII GRGCYC 2 cut(s) 48, 641
BbsI GAAGAC 1 cut(s) 962
Bbv12I GWGCWC 1 cut(s) 48
BbvI GCAGC 6 cut(s) 498, 607, 1159, 1187, 1426, 1448
BccI CCATC 4 cut(s) 314, 602, 806, 1369
BceAI ACGGC 5 cut(s) 475, 556, 567, 928, 936
BciT130I CCWGG 1 cut(s) 227
BcnI CCSGG 1 cut(s) 62
BcoDI GTCTC 2 cut(s) 110, 1285
BfaI CTAG 2 cut(s) 1199, 1478
BfmI CTRYAG 1 cut(s) 1173
BglII AGATCT 1 cut(s) 288
BisI GCNGC 9 cut(s) 40, 488, 512, 555, 596, 1173, 1176, 1437, 1440
BlpI GCTNAGC 1 cut(s) 861
BlsI GCNGC 9 cut(s) 41, 489, 513, 556, 597, 1174, 1177, 1438, 1441
Bme1390I CCNGG 2 cut(s) 62, 227
Bme18I GGWCC 3 cut(s) 4, 499, 1033
BmeRI GACNNNNNGTC 1 cut(s) 463
BmgBI CACGTC 1 cut(s) 190
BmgT120I GGNCC 5 cut(s) 4, 448, 499, 1033, 1215
BmiI GGNNCC 7 cut(s) 6, 88, 233, 450, 640, 756, 1259
BmrFI CCNGG 2 cut(s) 62, 227
BmrI ACTGGG 1 cut(s) 976
BmsI GCATC 2 cut(s) 696, 1490
BmuI ACTGGG 1 cut(s) 976
BpiI GAAGAC 1 cut(s) 962
BpmI CTGGAG 2 cut(s) 463, 536
Bpu1102I GCTNAGC 1 cut(s) 861
BpuMI CCSGG 1 cut(s) 62
BsaAI YACGTR 1 cut(s) 1405
BsaHI GRCGYC 2 cut(s) 387, 692
BsaI GGTCTC 1 cut(s) 110
BsaJI CCNNGG 5 cut(s) 37, 225, 226, 426, 453
BsaWI WCCGGW 1 cut(s) 78
BsaXI ACNNNNNCTCC 3 cut(s) 26, 995, 1025
Bsc4I CCNNNNNNNGG 7 cut(s) 226, 370, 445, 486, 627, 648, 1287
Bse118I RCCGGY 1 cut(s) 281
Bse1I ACTGG 2 cut(s) 971, 1025
BseBI CCWGG 1 cut(s) 227
BseDI CCNNGG 5 cut(s) 37, 225, 226, 426, 453
BseGI GGATG 3 cut(s) 207, 613, 838
BseLI CCNNNNNNNGG 7 cut(s) 226, 370, 445, 486, 627, 648, 1287
BseMII CTCAG 1 cut(s) 951
BseNI ACTGG 2 cut(s) 971, 1025
BseRI GAGGAG 4 cut(s) 155, 257, 521, 584
BseX3I CGGCCG 1 cut(s) 488
BseXI GCAGC 6 cut(s) 498, 607, 1159, 1187, 1426, 1448
BsgI GTGCAG 1 cut(s) 902
Bsh1236I CGCG 3 cut(s) 24, 39, 504
Bsh1285I CGRYCG 2 cut(s) 256, 491
BshFI GGCC 5 cut(s) 449, 490, 620, 1024, 1217
BshNI GGYRCC 1 cut(s) 754
BsiEI CGRYCG 2 cut(s) 256, 491
BsiHKAI GWGCWC 1 cut(s) 48
BsiSI CCGG 4 cut(s) 61, 79, 282, 866
BslI CCNNNNNNNGG 7 cut(s) 226, 370, 445, 486, 627, 648, 1287
BsmAI GTCTC 2 cut(s) 110, 1285
BsnI GGCC 5 cut(s) 449, 490, 620, 1024, 1217
Bso31I GGTCTC 1 cut(s) 110
Bsp1286I GDGCHC 2 cut(s) 48, 641
Bsp143I GATC 6 cut(s) 54, 231, 253, 288, 1131, 1192
Bsp1720I GCTNAGC 1 cut(s) 861
BspANI GGCC 5 cut(s) 449, 490, 620, 1024, 1217
BspCNI CTCAG 1 cut(s) 952
BspFNI CGCG 3 cut(s) 24, 39, 504
BspLI GGNNCC 7 cut(s) 6, 88, 233, 450, 640, 756, 1259
BspMAI CTGCAG 1 cut(s) 1177
BspPI GGATC 3 cut(s) 226, 239, 1200
BspT107I GGYRCC 1 cut(s) 754
BspTNI GGTCTC 1 cut(s) 110
BsrBI CCGCTC 2 cut(s) 129, 487
BsrFI RCCGGY 1 cut(s) 281
BsrI ACTGG 2 cut(s) 971, 1025
BssAI RCCGGY 1 cut(s) 281
BssECI CCNNGG 5 cut(s) 37, 225, 226, 426, 453
BssMI GATC 6 cut(s) 54, 231, 253, 288, 1131, 1192
BssNI GRCGYC 2 cut(s) 387, 692
BssT1I CCWWGG 1 cut(s) 426
Bst2UI CCWGG 1 cut(s) 227
Bst4CI ACNGT 5 cut(s) 241, 668, 872, 880, 1352
Bst6I CTCTTC 3 cut(s) 557, 1197, 1389
BstACI GRCGYC 2 cut(s) 387, 692
BstBAI YACGTR 1 cut(s) 1405
BstC8I GCNNGC 6 cut(s) 44, 220, 260, 485, 661, 1215
BstDEI CTNAG 2 cut(s) 861, 960
BstDSI CCRYGG 2 cut(s) 37, 453
BstF5I GGATG 3 cut(s) 207, 613, 838
BstFNI CGCG 3 cut(s) 24, 39, 504
BstKTI GATC 6 cut(s) 57, 234, 256, 291, 1134, 1195
BstMAI GTCTC 2 cut(s) 110, 1285
BstMBI GATC 6 cut(s) 54, 231, 253, 288, 1131, 1192
BstMCI CGRYCG 2 cut(s) 256, 491
BstMWI GCNNNNNNNGC 3 cut(s) 119, 660, 706
BstNI CCWGG 1 cut(s) 227
BstNSI RCATGY 2 cut(s) 466, 1267
BstSCI CCNGG 2 cut(s) 60, 225
BstSFI CTRYAG 1 cut(s) 1173
BstSNI TACGTA 1 cut(s) 1405
BstUI CGCG 3 cut(s) 24, 39, 504
BstV1I GCAGC 6 cut(s) 498, 607, 1159, 1187, 1426, 1448
BstV2I GAAGAC 1 cut(s) 962
BstX2I RGATCY 2 cut(s) 231, 288
BstYI RGATCY 2 cut(s) 231, 288
BstZI CGGCCG 1 cut(s) 488
BsuRI GGCC 5 cut(s) 449, 490, 620, 1024, 1217
BtgI CCRYGG 2 cut(s) 37, 453
BtrI CACGTC 1 cut(s) 190
BtsCI GGATG 3 cut(s) 207, 613, 838
BtsI GCAGTG 1 cut(s) 1124
BtsIMutI CAGTG 1 cut(s) 1124
Cac8I GCNNGC 6 cut(s) 44, 220, 260, 485, 661, 1215
CaiI CAGNNNCTG 1 cut(s) 775
Cfr10I RCCGGY 1 cut(s) 281
Cfr13I GGNCC 5 cut(s) 4, 448, 499, 1033, 1215
Cfr42I CCGCGG 1 cut(s) 40
CseI GACGC 2 cut(s) 700, 781
Csp6I GTAC 1 cut(s) 205
CviAII CATG 5 cut(s) 463, 655, 1037, 1072, 1264
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 2 cut(s) 861, 960
DpnI GATC 6 cut(s) 56, 233, 255, 290, 1133, 1194
DpnII GATC 6 cut(s) 54, 231, 253, 288, 1131, 1192
DrdI GACNNNNNNGTC 1 cut(s) 56
DriI GACNNNNNGTC 1 cut(s) 463
DseDI GACNNNNNNGTC 1 cut(s) 56
EaeI YGGCCR 2 cut(s) 488, 618
EagI CGGCCG 1 cut(s) 488
Eam1104I CTCTTC 3 cut(s) 557, 1197, 1389
Eam1105I GACNNNNNGTC 1 cut(s) 463
EarI CTCTTC 3 cut(s) 557, 1197, 1389
EciI GGCGGA 1 cut(s) 4
Ecl136II GAGCTC 1 cut(s) 46
EclXI CGGCCG 1 cut(s) 488
Eco105I TACGTA 1 cut(s) 1405
Eco130I CCWWGG 1 cut(s) 426
Eco24I GRGCYC 2 cut(s) 48, 641
Eco31I GGTCTC 1 cut(s) 110
Eco47I GGWCC 3 cut(s) 4, 499, 1033
Eco52I CGGCCG 1 cut(s) 488
Eco53kI GAGCTC 1 cut(s) 46
EcoICRI GAGCTC 1 cut(s) 46
EcoO109I RGGNCCY 1 cut(s) 448
EcoRI GAATTC 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 225
EcoT14I CCWWGG 1 cut(s) 426
EcoT22I ATGCAT 1 cut(s) 711
EcoT38I GRGCYC 2 cut(s) 48, 641
ErhI CCWWGG 1 cut(s) 426
FaeI CATG 5 cut(s) 466, 658, 1040, 1075, 1267
FatI CATG 5 cut(s) 462, 654, 1036, 1071, 1263
FauI CCCGC 3 cut(s) 227, 652, 1206
Fnu4HI GCNGC 9 cut(s) 40, 488, 512, 555, 596, 1173, 1176, 1437, 1440
FokI GGATG 3 cut(s) 194, 620, 845
FriOI GRGCYC 2 cut(s) 48, 641
Fsp4HI GCNGC 9 cut(s) 40, 488, 512, 555, 596, 1173, 1176, 1437, 1440
FspBI CTAG 2 cut(s) 1199, 1478
GluI GCNGC 9 cut(s) 40, 488, 512, 555, 596, 1173, 1176, 1437, 1440
GsuI CTGGAG 2 cut(s) 463, 536
HaeIII GGCC 5 cut(s) 449, 490, 620, 1024, 1217
HapII CCGG 4 cut(s) 61, 79, 282, 866
HgaI GACGC 2 cut(s) 700, 781
Hin1I GRCGYC 2 cut(s) 387, 692
Hin1II CATG 5 cut(s) 466, 658, 1040, 1075, 1267
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HinfI GANTC 5 cut(s) 302, 422, 590, 1097, 1444
HpaII CCGG 4 cut(s) 61, 79, 282, 866
HphI GGTGA 6 cut(s) 271, 386, 680, 853, 1403, 1403
Hpy166II GTNNAC 2 cut(s) 178, 457
Hpy188I TCNGA 3 cut(s) 91, 373, 643
Hpy188III TCNNGA 3 cut(s) 211, 769, 1138
Hpy8I GTNNAC 2 cut(s) 178, 457
Hpy99I CGWCG 6 cut(s) 389, 392, 562, 647, 694, 949
HpyCH4III ACNGT 5 cut(s) 241, 668, 872, 880, 1352
HpyCH4IV ACGT 4 cut(s) 174, 189, 387, 1404
HpyCH4V TGCA 5 cut(s) 522, 709, 883, 1175, 1275
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 660, 706
HpyF3I CTNAG 2 cut(s) 861, 960
HpySE526I ACGT 4 cut(s) 174, 189, 387, 1404
Hsp92I GRCGYC 2 cut(s) 387, 692
Hsp92II CATG 5 cut(s) 466, 658, 1040, 1075, 1267
KspI CCGCGG 1 cut(s) 40
Kzo9I GATC 6 cut(s) 54, 231, 253, 288, 1131, 1192
LmnI GCTCC 5 cut(s) 92, 134, 508, 644, 857
Lsp1109I GCAGC 6 cut(s) 498, 607, 1159, 1187, 1426, 1448
LweI GCATC 2 cut(s) 696, 1490
MaeI CTAG 2 cut(s) 1199, 1478
MaeII ACGT 4 cut(s) 174, 189, 387, 1404
MaeIII GTNAC 4 cut(s) 241, 668, 874, 916
MalI GATC 6 cut(s) 56, 233, 255, 290, 1133, 1194
MbiI CCGCTC 2 cut(s) 129, 487
MboI GATC 6 cut(s) 54, 231, 253, 288, 1131, 1192
MboII GAAGA 9 cut(s) 574, 736, 821, 898, 967, 1094, 1141, 1214, 1406
MflI RGATCY 2 cut(s) 231, 288
MhlI GDGCHC 2 cut(s) 48, 641
MlsI TGGCCA 1 cut(s) 620
MluCI AATT 6 cut(s) 311, 335, 674, 747, 1340, 1407
MluNI TGGCCA 1 cut(s) 620
MlyI GAGTC 3 cut(s) 296, 599, 1106
MmeI TCCRAC 2 cut(s) 114, 666
Mox20I TGGCCA 1 cut(s) 620
Mph1103I ATGCAT 1 cut(s) 711
MscI TGGCCA 1 cut(s) 620
MseI TTAA 3 cut(s) 632, 1050, 1326
Msp20I TGGCCA 1 cut(s) 620
MspA1I CMGCKG 2 cut(s) 39, 1439
MspI CCGG 4 cut(s) 61, 79, 282, 866
MspR9I CCNGG 2 cut(s) 62, 227
MvaI CCWGG 1 cut(s) 227
MvnI CGCG 3 cut(s) 24, 39, 504
MwoI GCNNNNNNNGC 3 cut(s) 119, 660, 706
NciI CCSGG 1 cut(s) 62
NdeII GATC 6 cut(s) 54, 231, 253, 288, 1131, 1192
NlaIII CATG 5 cut(s) 466, 658, 1040, 1075, 1267
NlaIV GGNNCC 7 cut(s) 6, 88, 233, 450, 640, 756, 1259
NmeAIII GCCGAG 2 cut(s) 139, 783
NmuCI GTSAC 3 cut(s) 241, 668, 916
NsiI ATGCAT 1 cut(s) 711
NspI RCATGY 2 cut(s) 466, 1267
PasI CCCWGGG 1 cut(s) 226
PciI ACATGT 1 cut(s) 462
PcsI WCGNNNNNNNCGW 3 cut(s) 54, 557, 779
PfeI GAWTC 2 cut(s) 422, 1444
PflMI CCANNNNNTGG 1 cut(s) 1287
PkrI GCNGC 9 cut(s) 41, 489, 513, 556, 597, 1174, 1177, 1438, 1441
Ple19I CGATCG 1 cut(s) 256
PleI GAGTC 3 cut(s) 296, 598, 1105
PpsI GAGTC 3 cut(s) 296, 598, 1105
Ppu21I YACGTR 1 cut(s) 1405
PscI ACATGT 1 cut(s) 462
PsiI TTATAA 1 cut(s) 789
Psp124BI GAGCTC 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 225
PspGI CCWGG 1 cut(s) 225
PspN4I GGNNCC 7 cut(s) 6, 88, 233, 450, 640, 756, 1259
PspPI GGNCC 5 cut(s) 4, 448, 499, 1033, 1215
PstI CTGCAG 1 cut(s) 1177
PstNI CAGNNNCTG 1 cut(s) 775
PsuI RGATCY 2 cut(s) 231, 288
PvuI CGATCG 1 cut(s) 256
PvuII CAGCTG 1 cut(s) 1439
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SacI GAGCTC 1 cut(s) 48
SacII CCGCGG 1 cut(s) 40
SaqAI TTAA 3 cut(s) 632, 1050, 1326
SatI GCNGC 9 cut(s) 40, 488, 512, 555, 596, 1173, 1176, 1437, 1440
Sau3AI GATC 6 cut(s) 54, 231, 253, 288, 1131, 1192
Sau96I GGNCC 5 cut(s) 4, 448, 499, 1033, 1215
SchI GAGTC 3 cut(s) 296, 599, 1106
ScrFI CCNGG 2 cut(s) 62, 227
SduI GDGCHC 2 cut(s) 48, 641
SfaNI GCATC 2 cut(s) 696, 1490
SfcI CTRYAG 1 cut(s) 1173
Sfr303I CCGCGG 1 cut(s) 40
SgrBI CCGCGG 1 cut(s) 40
SinI GGWCC 3 cut(s) 4, 499, 1033
SnaBI TACGTA 1 cut(s) 1405
Sse9I AATT 6 cut(s) 311, 335, 674, 747, 1340, 1407
SspMI CTAG 2 cut(s) 1199, 1478
SstI GAGCTC 1 cut(s) 48
StyD4I CCNGG 2 cut(s) 60, 225
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 5 cut(s) 241, 668, 872, 880, 1352
TaiI ACGT 4 cut(s) 177, 192, 390, 1407
TaqI TCGA 5 cut(s) 48, 156, 270, 309, 1139
TasI AATT 6 cut(s) 311, 335, 674, 747, 1340, 1407
TatI WGTACW 1 cut(s) 204
TauI GCSGC 3 cut(s) 42, 490, 557
TfiI GAWTC 2 cut(s) 422, 1444
Tru1I TTAA 3 cut(s) 632, 1050, 1326
Tru9I TTAA 3 cut(s) 632, 1050, 1326
TscAI CASTG 1 cut(s) 1124
TseFI GTSAC 3 cut(s) 241, 668, 916
TseI GCWGC 6 cut(s) 511, 595, 1172, 1175, 1436, 1439
Tsp45I GTSAC 3 cut(s) 241, 668, 916
TspDTI ATGAA 2 cut(s) 866, 1060
TspGWI ACGGA 2 cut(s) 845, 1270
TspRI CASTG 1 cut(s) 1124
Van91I CCANNNNNTGG 1 cut(s) 1287
VpaK11BI GGWCC 3 cut(s) 4, 499, 1033
XapI RAATTY 2 cut(s) 311, 335
XceI RCATGY 2 cut(s) 466, 1267
XspI CTAG 2 cut(s) 1199, 1478
ZraI GACGTC 1 cut(s) 388
Zsp2I ATGCAT 1 cut(s) 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.