Rh4BG195400

RNA pol II accessory factor, Cdc73 family, C-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0011953
Physical Location & Seq
Reverse (-)
33694405 .. 33695878
1474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG195400.1

Sequence Viewer

Length: 1233 bp
ATGGACCCTCTCTCCGCCCTGCGCGACTTCACAATCCGCGGCGAGCTCGACAAGATCGTCCGTGTCAACGACGAGTTCCGGTTCGGGTCCGACTACACCTTCCCCTGCTTCGCCGAGACCGCCTACCGCTCCAAGCAAGGCAATCTCTACACCCTCGAAACCCTCCTCCACTACGTCAACAACCACCATGTCAAGCACACCGAGTACATCCAGAACGCCCGCACCCAGGGGATCCCCACCGTCACTTTCCCCGATCGCAAGCCCCTCCTCGATTACCTCACCGGCAAGATCTCCACCACCGACTCCATCGAATTCGTCCTCCCTCAAAACCCTAAATTCCCCGACTTGCCCCTCAACGACTTCCCCTTCTCCGACCACCAGAACGACGTCGCTCACCACACCCCTGACCACAGCTTCGCCGATTCCAAGGATTTGAACCAGATTGAGGCCCCCGTGGACTACATGTCGTTGATTTACTCCAGCGAGAGGCCGTTGAAGGACCGCGAGGAGCTGCTGGAGTGTAAAGGGAGGAACTTTTACGGCGTGTTGACGGCGGCGACGAAGAGGGAGGAGGAACGACAGCGTATTGAGTCGCAGCAGAGGAAGGACGGGCTGGTGGCCAAGAGTAGGCTAATGGGCTCCGACGACAGGGGCATGGCGGGCTACGGTGACGAACTGGGCTACGACCCGACGCCCAAGCCCAAGATGCATTTGAAGGGAGGGAAGATTGGGGAAGGTGTGCCTATAATTCTGGTGCCCAGTGCATTCCAGACGCTGATTACGATTTATAATGTGAAGGAGTTTTTGGAAGATGGGGTTTATATACCTACGGATGTGAAGGTGAAGCAGATGAAGGGAGCTAAGCCGGACTGTGTTACTGTGCAGAAGAAGTTTAGCAGGGATAGGGATAGAGTGGTGACGGCGTATGAGGTTAGGGATAAGCCGTCGGCGTTGAAGACTGAGGATTGGGATAGGGTGGTGGCGGTTTTCGTGTTGGGGAAGGAGTGGCAGTTCAAGGACTGGCCTTTCAAGGACCATGTGGAGATTTTTAATAAGATTATGGGATTTTTCATGCGGTTTGAAGATGATAGTGTGGAGTCAGCAAAGATTGTGAAGCAGTGGAATGTGAAGATCATCTCGATTAGCAAGAATAAGCGACACCAAGATAGAGCTGCGGCATTGGAGGTGTGGGATCGGCTAGAAGAGTTTGTGCGGTCACGGTCACATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000428 GO:0000988 GO:0000989 GO:0000993 GO:0001076 GO:0001098 GO:0001099 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0008213 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016071 GO:0016569 GO:0016570 GO:0016571 GO:0016591 GO:0016593 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0030880 GO:0031123 GO:0031124 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0034243 GO:0034402 GO:0034622 GO:0034641 GO:0034968 GO:0036211 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051276 GO:0051568 GO:0055029 GO:0060255 GO:0061458 GO:0061695 GO:0065003 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0140110 GO:1901360 GO:1901564 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDC73_C CDC73_N

Protein Analysis

410

Amino Acids

47.39

Weight (kDa)

6.48

Isoelectric Point (pI)

35.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDC73_N PF16050 2 - 105 2.6e-19 Paf1 complex subunit CDC73 N-terminal
CDC73_C PF05179 247 - 403 4e-51 RNA pol II accessory factor, Cdc73 family, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011953)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22590
fragaria_vesca FvH4_4g16100 FvH4_4g16100
malus_domestica MD13G1196100.v1.1 MD16G1196600.v1.1
prunus_persica Prupe.1G016800_v2.0.a1
pyrus_communis pycom13g16820 pycom16g16540
rosa_chinensis RchiOBHm_Chr4g0415641
rosa_laevigata RLG00000008053
rosa_multiflora Rmu_sc0001194.1_g000007 Rmu_sc0004599.1_g000013
rosa_roxburghii Rroxscaffold_5G00359440
rosa_rugosa Rorug04G0136100
rosa_samantha Rh4AG196800 Rh4BG195400 Rh4CG207600 Rh4DG194700
rosa_wichuraiana Rw4G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 789
AasI GACNNNNNNGTC 1 cut(s) 56
AatII GACGTC 1 cut(s) 390
AccB1I GGYRCC 1 cut(s) 754
AccBSI CCGCTC 1 cut(s) 129
AccII CGCG 3 cut(s) 24, 39, 504
AclWI GGATC 3 cut(s) 226, 239, 1200
AcoI YGGCCR 1 cut(s) 618
AcsI RAATTY 2 cut(s) 311, 335
AcyI GRCGYC 2 cut(s) 387, 692
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 5 cut(s) 226, 445, 486, 627, 648
AflIII ACRYGT 1 cut(s) 462
AgsI TTSAA 7 cut(s) 436, 496, 715, 955, 1015, 1030, 1082
AhdI GACNNNNNGTC 1 cut(s) 463
AjnI CCWGG 1 cut(s) 225
AjuI GAANNNNNNNTTGG 2 cut(s) 788, 820
AloI GAACNNNNNNTCC 2 cut(s) 995, 1027
AluBI AGCT 5 cut(s) 46, 414, 511, 860, 1172
AluI AGCT 5 cut(s) 46, 414, 511, 860, 1172
Alw21I GWGCWC 1 cut(s) 48
Alw26I GTCTC 1 cut(s) 110
AlwI GGATC 3 cut(s) 226, 239, 1200
AlwNI CAGNNNCTG 1 cut(s) 775
AoxI GGCC 4 cut(s) 447, 488, 618, 1022
ApeKI GCWGC 3 cut(s) 511, 595, 1172
ApoI RAATTY 2 cut(s) 311, 335
ArsI GACNNNNNNTTYG 2 cut(s) 398, 430
AspLEI GCGC 1 cut(s) 24
AspS9I GGNCC 5 cut(s) 4, 87, 448, 499, 1033
AsuHPI GGTGA 5 cut(s) 271, 386, 680, 853, 928
AvaII GGWCC 4 cut(s) 4, 87, 499, 1033
BaeGI GKGCMC 1 cut(s) 759
BalI TGGCCA 1 cut(s) 620
BamHI GGATCC 1 cut(s) 231
BanI GGYRCC 1 cut(s) 754
BanII GRGCYC 2 cut(s) 48, 641
BbsI GAAGAC 1 cut(s) 962
Bbv12I GWGCWC 1 cut(s) 48
BbvI GCAGC 3 cut(s) 498, 607, 1159
BccI CCATC 2 cut(s) 314, 806
BceAI ACGGC 5 cut(s) 475, 556, 567, 928, 936
BciT130I CCWGG 1 cut(s) 227
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 1 cut(s) 1199
BglII AGATCT 1 cut(s) 288
BisI GCNGC 6 cut(s) 40, 512, 555, 596, 1173, 1176
BlpI GCTNAGC 1 cut(s) 861
BlsI GCNGC 6 cut(s) 41, 513, 556, 597, 1174, 1177
Bme1390I CCNGG 1 cut(s) 227
Bme18I GGWCC 4 cut(s) 4, 87, 499, 1033
BmeRI GACNNNNNGTC 1 cut(s) 463
BmgT120I GGNCC 5 cut(s) 4, 87, 448, 499, 1033
BmiI GGNNCC 6 cut(s) 6, 88, 233, 450, 640, 756
BmrFI CCNGG 1 cut(s) 227
BmrI ACTGGG 2 cut(s) 686, 753
BmsI GCATC 1 cut(s) 696
BmuI ACTGGG 2 cut(s) 686, 753
BpiI GAAGAC 1 cut(s) 962
BpmI CTGGAG 2 cut(s) 463, 536
Bpu1102I GCTNAGC 1 cut(s) 861
BsaHI GRCGYC 2 cut(s) 387, 692
BsaI GGTCTC 1 cut(s) 110
BsaJI CCNNGG 5 cut(s) 37, 225, 226, 426, 453
BsaWI WCCGGW 1 cut(s) 78
BsaXI ACNNNNNCTCC 3 cut(s) 26, 995, 1025
Bsc4I CCNNNNNNNGG 5 cut(s) 226, 445, 486, 627, 648
Bse118I RCCGGY 1 cut(s) 281
Bse1I ACTGG 3 cut(s) 681, 759, 1025
BseBI CCWGG 1 cut(s) 227
BseDI CCNNGG 5 cut(s) 37, 225, 226, 426, 453
BseGI GGATG 2 cut(s) 207, 838
BseLI CCNNNNNNNGG 5 cut(s) 226, 445, 486, 627, 648
BseMII CTCAG 1 cut(s) 951
BseNI ACTGG 3 cut(s) 681, 759, 1025
BseRI GAGGAG 4 cut(s) 155, 257, 521, 584
BseSI GKGCMC 1 cut(s) 759
BseXI GCAGC 3 cut(s) 498, 607, 1159
BsgI GTGCAG 1 cut(s) 902
Bsh1236I CGCG 3 cut(s) 24, 39, 504
Bsh1285I CGRYCG 1 cut(s) 256
BshFI GGCC 4 cut(s) 449, 490, 620, 1024
BshNI GGYRCC 1 cut(s) 754
BsiEI CGRYCG 1 cut(s) 256
BsiHKAI GWGCWC 1 cut(s) 48
BsiSI CCGG 3 cut(s) 79, 282, 866
BslI CCNNNNNNNGG 5 cut(s) 226, 445, 486, 627, 648
BsmAI GTCTC 1 cut(s) 110
BsmI GAATGC 1 cut(s) 764
BsnI GGCC 4 cut(s) 449, 490, 620, 1024
Bso31I GGTCTC 1 cut(s) 110
Bsp1286I GDGCHC 3 cut(s) 48, 641, 759
Bsp143I GATC 6 cut(s) 54, 231, 253, 288, 1131, 1192
Bsp1720I GCTNAGC 1 cut(s) 861
BspANI GGCC 4 cut(s) 449, 490, 620, 1024
BspCNI CTCAG 1 cut(s) 952
BspFNI CGCG 3 cut(s) 24, 39, 504
BspLI GGNNCC 6 cut(s) 6, 88, 233, 450, 640, 756
BspPI GGATC 3 cut(s) 226, 239, 1200
BspT107I GGYRCC 1 cut(s) 754
BspTNI GGTCTC 1 cut(s) 110
BsrBI CCGCTC 1 cut(s) 129
BsrFI RCCGGY 1 cut(s) 281
BsrI ACTGG 3 cut(s) 681, 759, 1025
BssAI RCCGGY 1 cut(s) 281
BssECI CCNNGG 5 cut(s) 37, 225, 226, 426, 453
BssMI GATC 6 cut(s) 54, 231, 253, 288, 1131, 1192
BssNI GRCGYC 2 cut(s) 387, 692
BssT1I CCWWGG 1 cut(s) 426
Bst2UI CCWGG 1 cut(s) 227
Bst4CI ACNGT 5 cut(s) 241, 668, 872, 880, 1221
Bst6I CTCTTC 2 cut(s) 557, 1197
BstACI GRCGYC 2 cut(s) 387, 692
BstC8I GCNNGC 4 cut(s) 44, 220, 260, 661
BstDEI CTNAG 2 cut(s) 861, 960
BstDSI CCRYGG 2 cut(s) 37, 453
BstF5I GGATG 2 cut(s) 207, 838
BstFNI CGCG 3 cut(s) 24, 39, 504
BstHHI GCGC 1 cut(s) 24
BstKTI GATC 6 cut(s) 57, 234, 256, 291, 1134, 1195
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 6 cut(s) 54, 231, 253, 288, 1131, 1192
BstMCI CGRYCG 1 cut(s) 256
BstMWI GCNNNNNNNGC 3 cut(s) 119, 660, 706
BstNI CCWGG 1 cut(s) 227
BstNSI RCATGY 1 cut(s) 466
BstSCI CCNGG 1 cut(s) 225
BstSLI GKGCMC 1 cut(s) 759
BstUI CGCG 3 cut(s) 24, 39, 504
BstV1I GCAGC 3 cut(s) 498, 607, 1159
BstV2I GAAGAC 1 cut(s) 962
BstX2I RGATCY 2 cut(s) 231, 288
BstYI RGATCY 2 cut(s) 231, 288
BsuRI GGCC 4 cut(s) 449, 490, 620, 1024
BtgI CCRYGG 2 cut(s) 37, 453
BtsCI GGATG 2 cut(s) 207, 838
BtsI GCAGTG 1 cut(s) 1124
BtsIMutI CAGTG 2 cut(s) 766, 1124
Cac8I GCNNGC 4 cut(s) 44, 220, 260, 661
CaiI CAGNNNCTG 1 cut(s) 775
CfoI GCGC 1 cut(s) 24
Cfr10I RCCGGY 1 cut(s) 281
Cfr13I GGNCC 5 cut(s) 4, 87, 448, 499, 1033
Cfr42I CCGCGG 1 cut(s) 40
CseI GACGC 2 cut(s) 700, 781
Csp6I GTAC 1 cut(s) 205
CviAII CATG 5 cut(s) 188, 463, 655, 1037, 1072
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 2 cut(s) 861, 960
DpnI GATC 6 cut(s) 56, 233, 255, 290, 1133, 1194
DpnII GATC 6 cut(s) 54, 231, 253, 288, 1131, 1192
DrdI GACNNNNNNGTC 1 cut(s) 56
DriI GACNNNNNGTC 1 cut(s) 463
DseDI GACNNNNNNGTC 1 cut(s) 56
EaeI YGGCCR 1 cut(s) 618
Eam1104I CTCTTC 2 cut(s) 557, 1197
Eam1105I GACNNNNNGTC 1 cut(s) 463
EarI CTCTTC 2 cut(s) 557, 1197
EciI GGCGGA 1 cut(s) 4
Ecl136II GAGCTC 1 cut(s) 46
Eco130I CCWWGG 1 cut(s) 426
Eco24I GRGCYC 2 cut(s) 48, 641
Eco31I GGTCTC 1 cut(s) 110
Eco47I GGWCC 4 cut(s) 4, 87, 499, 1033
Eco53kI GAGCTC 1 cut(s) 46
EcoICRI GAGCTC 1 cut(s) 46
EcoO109I RGGNCCY 1 cut(s) 448
EcoRI GAATTC 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 225
EcoT14I CCWWGG 1 cut(s) 426
EcoT22I ATGCAT 1 cut(s) 711
EcoT38I GRGCYC 2 cut(s) 48, 641
ErhI CCWWGG 1 cut(s) 426
FaeI CATG 5 cut(s) 191, 466, 658, 1040, 1075
FatI CATG 5 cut(s) 187, 462, 654, 1036, 1071
FauI CCCGC 2 cut(s) 227, 652
Fnu4HI GCNGC 6 cut(s) 40, 512, 555, 596, 1173, 1176
FokI GGATG 2 cut(s) 194, 845
FriOI GRGCYC 2 cut(s) 48, 641
Fsp4HI GCNGC 6 cut(s) 40, 512, 555, 596, 1173, 1176
FspBI CTAG 1 cut(s) 1199
GlaI GCGC 1 cut(s) 23
GluI GCNGC 6 cut(s) 40, 512, 555, 596, 1173, 1176
GsuI CTGGAG 2 cut(s) 463, 536
HaeIII GGCC 4 cut(s) 449, 490, 620, 1024
HapII CCGG 3 cut(s) 79, 282, 866
HgaI GACGC 2 cut(s) 700, 781
HhaI GCGC 1 cut(s) 24
Hin1I GRCGYC 2 cut(s) 387, 692
Hin1II CATG 5 cut(s) 191, 466, 658, 1040, 1075
Hin6I GCGC 1 cut(s) 22
HinP1I GCGC 1 cut(s) 22
HincII GTYRAC 3 cut(s) 67, 178, 549
HindII GTYRAC 3 cut(s) 67, 178, 549
HinfI GANTC 4 cut(s) 302, 422, 590, 1097
HpaII CCGG 3 cut(s) 79, 282, 866
HphI GGTGA 5 cut(s) 271, 386, 680, 853, 928
Hpy166II GTNNAC 4 cut(s) 67, 178, 457, 549
Hpy188I TCNGA 3 cut(s) 91, 373, 643
Hpy188III TCNNGA 4 cut(s) 211, 769, 1138, 1230
Hpy8I GTNNAC 4 cut(s) 67, 178, 457, 549
Hpy99I CGWCG 7 cut(s) 74, 389, 392, 562, 647, 694, 949
HpyCH4III ACNGT 5 cut(s) 241, 668, 872, 880, 1221
HpyCH4IV ACGT 2 cut(s) 174, 387
HpyCH4V TGCA 3 cut(s) 709, 764, 883
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 660, 706
HpyF3I CTNAG 2 cut(s) 861, 960
HpySE526I ACGT 2 cut(s) 174, 387
Hsp92I GRCGYC 2 cut(s) 387, 692
Hsp92II CATG 5 cut(s) 191, 466, 658, 1040, 1075
HspAI GCGC 1 cut(s) 22
KspI CCGCGG 1 cut(s) 40
Kzo9I GATC 6 cut(s) 54, 231, 253, 288, 1131, 1192
LmnI GCTCC 4 cut(s) 134, 508, 644, 857
Lsp1109I GCAGC 3 cut(s) 498, 607, 1159
LweI GCATC 1 cut(s) 696
MaeI CTAG 1 cut(s) 1199
MaeII ACGT 2 cut(s) 174, 387
MaeIII GTNAC 6 cut(s) 241, 668, 874, 916, 1215, 1221
MalI GATC 6 cut(s) 56, 233, 255, 290, 1133, 1194
MbiI CCGCTC 1 cut(s) 129
MboI GATC 6 cut(s) 54, 231, 253, 288, 1131, 1192
MboII GAAGA 8 cut(s) 574, 736, 821, 898, 967, 1094, 1141, 1214
MflI RGATCY 2 cut(s) 231, 288
MhlI GDGCHC 3 cut(s) 48, 641, 759
MlsI TGGCCA 1 cut(s) 620
MluCI AATT 3 cut(s) 311, 335, 747
MluNI TGGCCA 1 cut(s) 620
MlyI GAGTC 3 cut(s) 296, 599, 1106
MmeI TCCRAC 3 cut(s) 114, 396, 666
Mox20I TGGCCA 1 cut(s) 620
Mph1103I ATGCAT 1 cut(s) 711
MscI TGGCCA 1 cut(s) 620
MseI TTAA 1 cut(s) 1050
Msp20I TGGCCA 1 cut(s) 620
MspA1I CMGCKG 1 cut(s) 39
MspI CCGG 3 cut(s) 79, 282, 866
MspR9I CCNGG 1 cut(s) 227
Mva1269I GAATGC 1 cut(s) 764
MvaI CCWGG 1 cut(s) 227
MvnI CGCG 3 cut(s) 24, 39, 504
MwoI GCNNNNNNNGC 3 cut(s) 119, 660, 706
NdeII GATC 6 cut(s) 54, 231, 253, 288, 1131, 1192
NlaIII CATG 5 cut(s) 191, 466, 658, 1040, 1075
NlaIV GGNNCC 6 cut(s) 6, 88, 233, 450, 640, 756
NmeAIII GCCGAG 1 cut(s) 139
NmuCI GTSAC 5 cut(s) 241, 668, 916, 1215, 1221
NsiI ATGCAT 1 cut(s) 711
NspI RCATGY 1 cut(s) 466
PasI CCCWGGG 1 cut(s) 226
PciI ACATGT 1 cut(s) 462
PcsI WCGNNNNNNNCGW 3 cut(s) 54, 557, 779
PctI GAATGC 1 cut(s) 764
PfeI GAWTC 1 cut(s) 422
PkrI GCNGC 6 cut(s) 41, 513, 556, 597, 1174, 1177
Ple19I CGATCG 1 cut(s) 256
PleI GAGTC 3 cut(s) 296, 598, 1105
PpsI GAGTC 3 cut(s) 296, 598, 1105
PscI ACATGT 1 cut(s) 462
PsiI TTATAA 1 cut(s) 789
Psp124BI GAGCTC 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 225
PspGI CCWGG 1 cut(s) 225
PspN4I GGNNCC 6 cut(s) 6, 88, 233, 450, 640, 756
PspPI GGNCC 5 cut(s) 4, 87, 448, 499, 1033
PstNI CAGNNNCTG 1 cut(s) 775
PsuI RGATCY 2 cut(s) 231, 288
PvuI CGATCG 1 cut(s) 256
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SacI GAGCTC 1 cut(s) 48
SacII CCGCGG 1 cut(s) 40
SaqAI TTAA 1 cut(s) 1050
SatI GCNGC 6 cut(s) 40, 512, 555, 596, 1173, 1176
Sau3AI GATC 6 cut(s) 54, 231, 253, 288, 1131, 1192
Sau96I GGNCC 5 cut(s) 4, 87, 448, 499, 1033
SchI GAGTC 3 cut(s) 296, 599, 1106
ScrFI CCNGG 1 cut(s) 227
SduI GDGCHC 3 cut(s) 48, 641, 759
SfaNI GCATC 1 cut(s) 696
Sfr303I CCGCGG 1 cut(s) 40
SgrBI CCGCGG 1 cut(s) 40
SinI GGWCC 4 cut(s) 4, 87, 499, 1033
Sse9I AATT 3 cut(s) 311, 335, 747
SspMI CTAG 1 cut(s) 1199
SstI GAGCTC 1 cut(s) 48
StyD4I CCNGG 1 cut(s) 225
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 5 cut(s) 241, 668, 872, 880, 1221
TaiI ACGT 2 cut(s) 177, 390
TaqI TCGA 5 cut(s) 48, 156, 270, 309, 1139
TasI AATT 3 cut(s) 311, 335, 747
TatI WGTACW 1 cut(s) 204
TauI GCSGC 3 cut(s) 42, 557, 1178
TfiI GAWTC 1 cut(s) 422
Tru1I TTAA 1 cut(s) 1050
Tru9I TTAA 1 cut(s) 1050
TscAI CASTG 2 cut(s) 766, 1124
TseFI GTSAC 5 cut(s) 241, 668, 916, 1215, 1221
TseI GCWGC 3 cut(s) 511, 595, 1172
Tsp45I GTSAC 5 cut(s) 241, 668, 916, 1215, 1221
TspDTI ATGAA 2 cut(s) 866, 1060
TspGWI ACGGA 2 cut(s) 50, 845
TspRI CASTG 2 cut(s) 766, 1124
VpaK11BI GGWCC 4 cut(s) 4, 87, 499, 1033
XapI RAATTY 2 cut(s) 311, 335
XceI RCATGY 1 cut(s) 466
XspI CTAG 1 cut(s) 1199
ZraI GACGTC 1 cut(s) 388
Zsp2I ATGCAT 1 cut(s) 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.