Rh4DG194700

RNA pol II accessory factor, Cdc73 family, C-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0011953
Physical Location & Seq
Reverse (-)
38068038 .. 38069505
1468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG194700.1

Sequence Viewer

Length: 1227 bp
ATGGACCCTCTCTCCGCCCTGCGCGACTTCACAATCCGCGGCGAGCTCGACAAGATCGTCCGTGTCAACGACGAGTTCCGGTTCGGGTCCGACTACACCTTCCCCTGCTTCGCCGAGACCGCCTACCGCTCCAAGCAAGGCAATCTCTACACCCTCGAAACCCTCCTCCACTACGTCAACAACCACCACGTCAAGCACACCGAGTACATCCAGAACGCCCGCACCCAGGGGATCCCCACCGTCACTTTCCCCGATCGCAAGCCCCTCCTCGATTACCTCAGCGGCAAGATCTCCACCACCGACTCCATCGAATTCGTCCTCCCTCAAAACCCTAAATTCCCCGATTTGCCCCTCAACGACTTCCCCTTCTCCGACCACCAGAACGACGTCGCTCACCACACCCCTGACCACAGCTTCGCCGACTCCAAGGATTTGAACCAGATTGAGGCCCCCGTGGACTACATGTCGTTGATTTACTCCAGCGAGAGGCCGTTGAAGGACCGCGAGGAGCTGCTGGAGTGTAAAGGGAGGAACTTTTACGGCGTGTTGACGGCGGCGACGAAGAGGGAGGAGGAACGACAGCGTATTGAGTCGCAGCAGAGGAAGGACGGGCTGGTGGCCAAGAGTAGGCTAATGGGCTCCGACGACAGGGGCATGGCGGGCTACGGTGACGAATTGGGCTACGACCCGACGCCCAAGATGCATTTGAAGGGAGGGAAGATTGGGGAAGGTGTGCCTATAATTCTGGTGCCCAGTGCGTTCCAGACGCTGATTACGATTTATAATGTGAAGGAGTTTTTGGAAGATGGGGTTTATATACCTACGGATGTGAAGGTGAAGCAGATGAAGGGAGCTAAGCCGGACTGTGTTACTGTGCAGAAGAAGTTTAGCAGGGATAGGGATAGAGTGGTGACGGCGTATGAGGTTAGGGATAAGCCGTCGGCGTTGAAGACTGAGGATTGGGATAGGGTGGTGGCGGTTTTCGTGTTGGGGAAGGAGTGGCAGTTCAAGGACTGGCCTTTCAAGGACCATGTGGAGATTTTTAATAAGATTATGGGATTTTTCATGCGGTTTGAAGATGATAGTGTGGAGTCAGCAAAGATTGTGAAGCAGTGGAATGTGAAGATCATCTCGATTAGCAAGAATAAGCGACACCAAGATAGAGCTGCGGCATTGGAGGTGTGGGATCGGCTAGAAGAGTTTGTACGGTCACGGTCACATTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000428 GO:0000988 GO:0000989 GO:0000993 GO:0001076 GO:0001098 GO:0001099 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0008213 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016071 GO:0016569 GO:0016570 GO:0016571 GO:0016591 GO:0016593 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0030880 GO:0031123 GO:0031124 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0034243 GO:0034402 GO:0034622 GO:0034641 GO:0034968 GO:0036211 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051276 GO:0051568 GO:0055029 GO:0060255 GO:0061458 GO:0061695 GO:0065003 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0140110 GO:1901360 GO:1901564 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDC73_C CDC73_N

Protein Analysis

408

Amino Acids

47.15

Weight (kDa)

6.34

Isoelectric Point (pI)

36.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDC73_N PF16050 2 - 105 2.8e-19 Paf1 complex subunit CDC73 N-terminal
CDC73_C PF05179 245 - 401 4e-51 RNA pol II accessory factor, Cdc73 family, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011953)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22590
fragaria_vesca FvH4_4g16100 FvH4_4g16100
malus_domestica MD13G1196100.v1.1 MD16G1196600.v1.1
prunus_persica Prupe.1G016800_v2.0.a1
pyrus_communis pycom13g16820 pycom16g16540
rosa_chinensis RchiOBHm_Chr4g0415641
rosa_laevigata RLG00000008053
rosa_multiflora Rmu_sc0001194.1_g000007 Rmu_sc0004599.1_g000013
rosa_roxburghii Rroxscaffold_5G00359440
rosa_rugosa Rorug04G0136100
rosa_samantha Rh4AG196800 Rh4BG195400 Rh4CG207600 Rh4DG194700
rosa_wichuraiana Rw4G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 783
AasI GACNNNNNNGTC 1 cut(s) 56
AatII GACGTC 1 cut(s) 390
AccB1I GGYRCC 1 cut(s) 748
AccBSI CCGCTC 1 cut(s) 129
AccII CGCG 3 cut(s) 24, 39, 504
AclWI GGATC 3 cut(s) 226, 239, 1194
AcoI YGGCCR 1 cut(s) 618
AcsI RAATTY 2 cut(s) 311, 335
AcyI GRCGYC 2 cut(s) 387, 692
AfaI GTAC 2 cut(s) 206, 1206
AfiI CCNNNNNNNGG 5 cut(s) 226, 445, 486, 627, 648
AflIII ACRYGT 1 cut(s) 462
AgsI TTSAA 7 cut(s) 436, 496, 709, 949, 1009, 1024, 1076
AhdI GACNNNNNGTC 1 cut(s) 463
AjiI CACGTC 1 cut(s) 190
AjnI CCWGG 1 cut(s) 225
AjuI GAANNNNNNNTTGG 2 cut(s) 782, 814
AloI GAACNNNNNNTCC 2 cut(s) 989, 1021
AluBI AGCT 5 cut(s) 46, 414, 511, 854, 1166
AluI AGCT 5 cut(s) 46, 414, 511, 854, 1166
Alw21I GWGCWC 1 cut(s) 48
Alw26I GTCTC 1 cut(s) 110
AlwI GGATC 3 cut(s) 226, 239, 1194
AlwNI CAGNNNCTG 1 cut(s) 769
AoxI GGCC 4 cut(s) 447, 488, 618, 1016
ApeKI GCWGC 3 cut(s) 511, 595, 1166
ApoI RAATTY 2 cut(s) 311, 335
ArsI GACNNNNNNTTYG 2 cut(s) 398, 430
AspLEI GCGC 1 cut(s) 24
AspS9I GGNCC 5 cut(s) 4, 87, 448, 499, 1027
AsuHPI GGTGA 4 cut(s) 386, 680, 847, 922
AvaII GGWCC 4 cut(s) 4, 87, 499, 1027
BaeGI GKGCMC 1 cut(s) 753
BalI TGGCCA 1 cut(s) 620
BamHI GGATCC 1 cut(s) 231
BanI GGYRCC 1 cut(s) 748
BanII GRGCYC 2 cut(s) 48, 641
BarI GAAGNNNNNNTAC 2 cut(s) 1188, 1220
BbsI GAAGAC 1 cut(s) 956
Bbv12I GWGCWC 1 cut(s) 48
BbvCI CCTCAGC 1 cut(s) 278
BbvI GCAGC 3 cut(s) 498, 607, 1153
BccI CCATC 2 cut(s) 314, 800
BceAI ACGGC 5 cut(s) 475, 556, 567, 922, 930
BciT130I CCWGG 1 cut(s) 227
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 1 cut(s) 1193
BglII AGATCT 1 cut(s) 288
BisI GCNGC 7 cut(s) 40, 283, 512, 555, 596, 1167, 1170
BlpI GCTNAGC 1 cut(s) 855
BlsI GCNGC 7 cut(s) 41, 284, 513, 556, 597, 1168, 1171
Bme1390I CCNGG 1 cut(s) 227
Bme18I GGWCC 4 cut(s) 4, 87, 499, 1027
BmeRI GACNNNNNGTC 1 cut(s) 463
BmgBI CACGTC 1 cut(s) 190
BmgT120I GGNCC 5 cut(s) 4, 87, 448, 499, 1027
BmiI GGNNCC 6 cut(s) 6, 88, 233, 450, 640, 750
BmrFI CCNGG 1 cut(s) 227
BmrI ACTGGG 1 cut(s) 747
BmsI GCATC 1 cut(s) 690
BmuI ACTGGG 1 cut(s) 747
BpiI GAAGAC 1 cut(s) 956
BpmI CTGGAG 2 cut(s) 463, 536
Bpu10I CCTNAGC 1 cut(s) 278
Bpu1102I GCTNAGC 1 cut(s) 855
BsaHI GRCGYC 2 cut(s) 387, 692
BsaI GGTCTC 1 cut(s) 110
BsaJI CCNNGG 5 cut(s) 37, 225, 226, 426, 453
BsaWI WCCGGW 1 cut(s) 78
BsaXI ACNNNNNCTCC 3 cut(s) 26, 989, 1019
Bsc4I CCNNNNNNNGG 5 cut(s) 226, 445, 486, 627, 648
Bse1I ACTGG 2 cut(s) 753, 1019
BseBI CCWGG 1 cut(s) 227
BseDI CCNNGG 5 cut(s) 37, 225, 226, 426, 453
BseGI GGATG 2 cut(s) 207, 832
BseLI CCNNNNNNNGG 5 cut(s) 226, 445, 486, 627, 648
BseMII CTCAG 2 cut(s) 292, 945
BseNI ACTGG 2 cut(s) 753, 1019
BseRI GAGGAG 4 cut(s) 155, 257, 521, 584
BseSI GKGCMC 1 cut(s) 753
BseXI GCAGC 3 cut(s) 498, 607, 1153
BsgI GTGCAG 1 cut(s) 896
Bsh1236I CGCG 3 cut(s) 24, 39, 504
Bsh1285I CGRYCG 1 cut(s) 256
BshFI GGCC 4 cut(s) 449, 490, 620, 1018
BshNI GGYRCC 1 cut(s) 748
BsiEI CGRYCG 1 cut(s) 256
BsiHKAI GWGCWC 1 cut(s) 48
BsiSI CCGG 2 cut(s) 79, 860
BslI CCNNNNNNNGG 5 cut(s) 226, 445, 486, 627, 648
BsmAI GTCTC 1 cut(s) 110
BsnI GGCC 4 cut(s) 449, 490, 620, 1018
Bso31I GGTCTC 1 cut(s) 110
Bsp1286I GDGCHC 3 cut(s) 48, 641, 753
Bsp143I GATC 6 cut(s) 54, 231, 253, 288, 1125, 1186
Bsp1720I GCTNAGC 1 cut(s) 855
BspANI GGCC 4 cut(s) 449, 490, 620, 1018
BspCNI CTCAG 2 cut(s) 291, 946
BspFNI CGCG 3 cut(s) 24, 39, 504
BspLI GGNNCC 6 cut(s) 6, 88, 233, 450, 640, 750
BspPI GGATC 3 cut(s) 226, 239, 1194
BspT107I GGYRCC 1 cut(s) 748
BspTNI GGTCTC 1 cut(s) 110
BsrBI CCGCTC 1 cut(s) 129
BsrI ACTGG 2 cut(s) 753, 1019
BssECI CCNNGG 5 cut(s) 37, 225, 226, 426, 453
BssMI GATC 6 cut(s) 54, 231, 253, 288, 1125, 1186
BssNI GRCGYC 2 cut(s) 387, 692
BssT1I CCWWGG 1 cut(s) 426
Bst2UI CCWGG 1 cut(s) 227
Bst4CI ACNGT 6 cut(s) 241, 668, 866, 874, 1209, 1215
Bst6I CTCTTC 2 cut(s) 557, 1191
BstACI GRCGYC 2 cut(s) 387, 692
BstC8I GCNNGC 4 cut(s) 44, 220, 260, 661
BstDEI CTNAG 3 cut(s) 278, 855, 954
BstDSI CCRYGG 2 cut(s) 37, 453
BstF5I GGATG 2 cut(s) 207, 832
BstFNI CGCG 3 cut(s) 24, 39, 504
BstHHI GCGC 1 cut(s) 24
BstKTI GATC 6 cut(s) 57, 234, 256, 291, 1128, 1189
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 6 cut(s) 54, 231, 253, 288, 1125, 1186
BstMCI CGRYCG 1 cut(s) 256
BstMWI GCNNNNNNNGC 3 cut(s) 119, 660, 700
BstNI CCWGG 1 cut(s) 227
BstNSI RCATGY 1 cut(s) 466
BstSCI CCNGG 1 cut(s) 225
BstSLI GKGCMC 1 cut(s) 753
BstUI CGCG 3 cut(s) 24, 39, 504
BstV1I GCAGC 3 cut(s) 498, 607, 1153
BstV2I GAAGAC 1 cut(s) 956
BstX2I RGATCY 2 cut(s) 231, 288
BstYI RGATCY 2 cut(s) 231, 288
BsuRI GGCC 4 cut(s) 449, 490, 620, 1018
BtgI CCRYGG 2 cut(s) 37, 453
BtrI CACGTC 1 cut(s) 190
BtsCI GGATG 2 cut(s) 207, 832
BtsI GCAGTG 1 cut(s) 1118
BtsIMutI CAGTG 2 cut(s) 760, 1118
Cac8I GCNNGC 4 cut(s) 44, 220, 260, 661
CaiI CAGNNNCTG 1 cut(s) 769
CfoI GCGC 1 cut(s) 24
Cfr13I GGNCC 5 cut(s) 4, 87, 448, 499, 1027
Cfr42I CCGCGG 1 cut(s) 40
CseI GACGC 2 cut(s) 700, 775
Csp6I GTAC 2 cut(s) 205, 1205
CviAII CATG 4 cut(s) 463, 655, 1031, 1066
CviQI GTAC 2 cut(s) 205, 1205
DdeI CTNAG 3 cut(s) 278, 855, 954
DpnI GATC 6 cut(s) 56, 233, 255, 290, 1127, 1188
DpnII GATC 6 cut(s) 54, 231, 253, 288, 1125, 1186
DrdI GACNNNNNNGTC 1 cut(s) 56
DriI GACNNNNNGTC 1 cut(s) 463
DseDI GACNNNNNNGTC 1 cut(s) 56
EaeI YGGCCR 1 cut(s) 618
Eam1104I CTCTTC 2 cut(s) 557, 1191
Eam1105I GACNNNNNGTC 1 cut(s) 463
EarI CTCTTC 2 cut(s) 557, 1191
EciI GGCGGA 1 cut(s) 4
Ecl136II GAGCTC 1 cut(s) 46
Eco130I CCWWGG 1 cut(s) 426
Eco24I GRGCYC 2 cut(s) 48, 641
Eco31I GGTCTC 1 cut(s) 110
Eco47I GGWCC 4 cut(s) 4, 87, 499, 1027
Eco53kI GAGCTC 1 cut(s) 46
EcoICRI GAGCTC 1 cut(s) 46
EcoO109I RGGNCCY 1 cut(s) 448
EcoRI GAATTC 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 225
EcoT14I CCWWGG 1 cut(s) 426
EcoT22I ATGCAT 1 cut(s) 705
EcoT38I GRGCYC 2 cut(s) 48, 641
ErhI CCWWGG 1 cut(s) 426
FaeI CATG 4 cut(s) 466, 658, 1034, 1069
FatI CATG 4 cut(s) 462, 654, 1030, 1065
FauI CCCGC 2 cut(s) 227, 652
Fnu4HI GCNGC 7 cut(s) 40, 283, 512, 555, 596, 1167, 1170
FokI GGATG 2 cut(s) 194, 839
FriOI GRGCYC 2 cut(s) 48, 641
Fsp4HI GCNGC 7 cut(s) 40, 283, 512, 555, 596, 1167, 1170
FspBI CTAG 1 cut(s) 1193
GlaI GCGC 1 cut(s) 23
GluI GCNGC 7 cut(s) 40, 283, 512, 555, 596, 1167, 1170
GsuI CTGGAG 2 cut(s) 463, 536
HaeIII GGCC 4 cut(s) 449, 490, 620, 1018
HapII CCGG 2 cut(s) 79, 860
HgaI GACGC 2 cut(s) 700, 775
HhaI GCGC 1 cut(s) 24
Hin1I GRCGYC 2 cut(s) 387, 692
Hin1II CATG 4 cut(s) 466, 658, 1034, 1069
Hin6I GCGC 1 cut(s) 22
HinP1I GCGC 1 cut(s) 22
HincII GTYRAC 3 cut(s) 67, 178, 549
HindII GTYRAC 3 cut(s) 67, 178, 549
HinfI GANTC 4 cut(s) 302, 422, 590, 1091
HpaII CCGG 2 cut(s) 79, 860
HphI GGTGA 4 cut(s) 386, 680, 847, 922
Hpy166II GTNNAC 4 cut(s) 67, 178, 457, 549
Hpy188I TCNGA 3 cut(s) 91, 373, 643
Hpy188III TCNNGA 4 cut(s) 211, 763, 1132, 1224
Hpy8I GTNNAC 4 cut(s) 67, 178, 457, 549
Hpy99I CGWCG 7 cut(s) 74, 389, 392, 562, 647, 694, 943
HpyCH4III ACNGT 6 cut(s) 241, 668, 866, 874, 1209, 1215
HpyCH4IV ACGT 3 cut(s) 174, 189, 387
HpyCH4V TGCA 2 cut(s) 703, 877
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 660, 700
HpyF3I CTNAG 3 cut(s) 278, 855, 954
HpySE526I ACGT 3 cut(s) 174, 189, 387
Hsp92I GRCGYC 2 cut(s) 387, 692
Hsp92II CATG 4 cut(s) 466, 658, 1034, 1069
HspAI GCGC 1 cut(s) 22
KspI CCGCGG 1 cut(s) 40
Kzo9I GATC 6 cut(s) 54, 231, 253, 288, 1125, 1186
LmnI GCTCC 4 cut(s) 134, 508, 644, 851
Lsp1109I GCAGC 3 cut(s) 498, 607, 1153
LweI GCATC 1 cut(s) 690
MaeI CTAG 1 cut(s) 1193
MaeII ACGT 3 cut(s) 174, 189, 387
MaeIII GTNAC 6 cut(s) 241, 668, 868, 910, 1209, 1215
MalI GATC 6 cut(s) 56, 233, 255, 290, 1127, 1188
MbiI CCGCTC 1 cut(s) 129
MboI GATC 6 cut(s) 54, 231, 253, 288, 1125, 1186
MboII GAAGA 8 cut(s) 574, 730, 815, 892, 961, 1088, 1135, 1208
MflI RGATCY 2 cut(s) 231, 288
MhlI GDGCHC 3 cut(s) 48, 641, 753
MlsI TGGCCA 1 cut(s) 620
MluCI AATT 4 cut(s) 311, 335, 674, 741
MluNI TGGCCA 1 cut(s) 620
MlyI GAGTC 4 cut(s) 296, 416, 599, 1100
MmeI TCCRAC 3 cut(s) 114, 396, 666
Mox20I TGGCCA 1 cut(s) 620
Mph1103I ATGCAT 1 cut(s) 705
MscI TGGCCA 1 cut(s) 620
MseI TTAA 1 cut(s) 1044
Msp20I TGGCCA 1 cut(s) 620
MspA1I CMGCKG 2 cut(s) 39, 282
MspI CCGG 2 cut(s) 79, 860
MspR9I CCNGG 1 cut(s) 227
MvaI CCWGG 1 cut(s) 227
MvnI CGCG 3 cut(s) 24, 39, 504
MwoI GCNNNNNNNGC 3 cut(s) 119, 660, 700
NdeII GATC 6 cut(s) 54, 231, 253, 288, 1125, 1186
NlaIII CATG 4 cut(s) 466, 658, 1034, 1069
NlaIV GGNNCC 6 cut(s) 6, 88, 233, 450, 640, 750
NmeAIII GCCGAG 1 cut(s) 139
NmuCI GTSAC 5 cut(s) 241, 668, 910, 1209, 1215
NsiI ATGCAT 1 cut(s) 705
NspI RCATGY 1 cut(s) 466
PasI CCCWGGG 1 cut(s) 226
PciI ACATGT 1 cut(s) 462
PcsI WCGNNNNNNNCGW 3 cut(s) 54, 557, 773
PkrI GCNGC 7 cut(s) 41, 284, 513, 556, 597, 1168, 1171
Ple19I CGATCG 1 cut(s) 256
PleI GAGTC 4 cut(s) 296, 416, 598, 1099
PpsI GAGTC 4 cut(s) 296, 416, 598, 1099
PscI ACATGT 1 cut(s) 462
PsiI TTATAA 1 cut(s) 783
Psp124BI GAGCTC 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 225
PspGI CCWGG 1 cut(s) 225
PspN4I GGNNCC 6 cut(s) 6, 88, 233, 450, 640, 750
PspPI GGNCC 5 cut(s) 4, 87, 448, 499, 1027
PstNI CAGNNNCTG 1 cut(s) 769
PsuI RGATCY 2 cut(s) 231, 288
PvuI CGATCG 1 cut(s) 256
RsaI GTAC 2 cut(s) 206, 1206
RsaNI GTAC 2 cut(s) 205, 1205
SacI GAGCTC 1 cut(s) 48
SacII CCGCGG 1 cut(s) 40
SaqAI TTAA 1 cut(s) 1044
SatI GCNGC 7 cut(s) 40, 283, 512, 555, 596, 1167, 1170
Sau3AI GATC 6 cut(s) 54, 231, 253, 288, 1125, 1186
Sau96I GGNCC 5 cut(s) 4, 87, 448, 499, 1027
SchI GAGTC 4 cut(s) 296, 416, 599, 1100
ScrFI CCNGG 1 cut(s) 227
SduI GDGCHC 3 cut(s) 48, 641, 753
SfaNI GCATC 1 cut(s) 690
Sfr303I CCGCGG 1 cut(s) 40
SgrBI CCGCGG 1 cut(s) 40
SinI GGWCC 4 cut(s) 4, 87, 499, 1027
Sse9I AATT 4 cut(s) 311, 335, 674, 741
SspMI CTAG 1 cut(s) 1193
SstI GAGCTC 1 cut(s) 48
StyD4I CCNGG 1 cut(s) 225
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 6 cut(s) 241, 668, 866, 874, 1209, 1215
TaiI ACGT 3 cut(s) 177, 192, 390
TaqI TCGA 5 cut(s) 48, 156, 270, 309, 1133
TasI AATT 4 cut(s) 311, 335, 674, 741
TatI WGTACW 1 cut(s) 204
TauI GCSGC 4 cut(s) 42, 285, 557, 1172
Tru1I TTAA 1 cut(s) 1044
Tru9I TTAA 1 cut(s) 1044
TscAI CASTG 2 cut(s) 760, 1118
TseFI GTSAC 5 cut(s) 241, 668, 910, 1209, 1215
TseI GCWGC 3 cut(s) 511, 595, 1166
Tsp45I GTSAC 5 cut(s) 241, 668, 910, 1209, 1215
TspDTI ATGAA 2 cut(s) 860, 1054
TspGWI ACGGA 2 cut(s) 50, 839
TspRI CASTG 2 cut(s) 760, 1118
VpaK11BI GGWCC 4 cut(s) 4, 87, 499, 1027
XapI RAATTY 2 cut(s) 311, 335
XceI RCATGY 1 cut(s) 466
XspI CTAG 1 cut(s) 1193
ZraI GACGTC 1 cut(s) 388
Zsp2I ATGCAT 1 cut(s) 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.