Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0013521

Physical Location & Seq

Genomic Coordinates Reverse (-)

20418619 .. 20423783

Gene Structure 5165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g16500.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2082 bp

ATGGGTGTCAAAGCCGGCTCCGTCATAAACCGCCTCCTCTACGACAAAGCCCACCTCACCAAACCCTCCCACCCATCCGAAGCCAAAGCCGCCACCGCCGCCATCCTCTCCCACCTCTCTTCCGGCCACCTCCGCAAAGCCGTCTCCCTCCTCTTCTCCACCCCATTCCCCTTCCACTTCTCCCTCTACTCCCACCTCTTCCACCTCTGCTCCTCCTCCCGCTCCCTCCTCGAAACCCGCAAGCTCGAGTCTCACCTCGTCACCTTCTCCCCAACTCCTCCCATCTTCCTCCTCAACCGCACCATCGAGTCCTACGCCAAATGCGGGTCCCTCGGAGACGCACGCGAGTTGTTCGACGAAATGCCCCAGCGAGACGGCGGGTCCTGGAACGCCATGATCAAAGCGTATTCGCAAGGCTCGCGCCCCGAGGAGGCTTTGGGGACGTTTTTGGAGATGAATAGGGCCGGGTTCTTGCCGAATGAGGTTACTTTCGCGAGTGTGATAGGCTCGTGTGGTGCGGTTTTGGAGGTTTGGGTGGCGAGGCAGGTGCATGGGCTTGTTGTCAAGTATGGTTTTGGCGGGAATGTGATTTTGGGGAGCTCGCTTGTTGATGTGTATGGGAAGTGTGGGGAGATGGGGGATGCGAGGAGAGTGTTTGAGGAGATTGAGGAGCCGAATGAGGTTTCGTGGAATATAGTTGTGAGGAGGTATCTTGAGATGGGGGAGGGAATGGAGGCGGTGATGATGTTTGTTAGGATGCTTGTGGCGGGGGTAAGGCCGTTGAGTCATACATTTTCGAATGCACTTGTGGCGTGTTCGAGTTGTTTTGCGCTTGTGGAGGGGAAGAGGGTACATGGAGTTGCGGTTAAAATGGGGTTTGAGGATGATGAGGTTGTCTCGAGCTCGCTTATTGATATGTATGTGAAATGCGGGAAGCTAGGTGATGCGCATGCGATTTTTGACCAGCCACATTTGAAAAACTTGATTTCTTGGACTTCAATTGTTTCCGGGTATGCTATGAGTGGACAAACGTCGAAGGCGAGGGCTTTGTTCGATGAGATGCCTGAACGGAATGTGATATCTTGGAATGCAATGTTGGCAGGGTATACTCGTTACTTCCAATGGGAAGAGGCTTTGAATTTTATATTTTTGATGCAGAATACCACTAGAGATATTGACCAAGTCACTCTTGGGTTGATCCTGAATGTATGTGCTGGCCTTTCAGATGTTGAAATGGGGAAACAGGTTCATGGATTCATTTACCGACATGGATATTGTTCCAATCTGTTTGTTGGAAATGGTCTTCTCTACATGTATGGTCAATGTCGTAACATGAGAAATTCCAAAACAGTTTGGTTTCACCAGATTAGTCCATCACGGGATACAGTTTCTTGGAATAGTTTGTTGACATGCTATGCTCAACATCATCTTAGTGAACTGGCTATGATCATCTTCTATGAGATGCAATGTGAGACAACACCTAACGAGATTACATTTGCAACTCTACTGTCAGTATGCGCAAATATTTTTGCACTTGAGCAAGGCAAACAAATTCATGGTTTCATGATTCGAAATGGTTACATTATAGATACCGTGGTCAGAGGGGCTTTGGTTGACCTGTATACCAAGTGTCGTTCTATTAAGTACGCTTTTAAGGTTTTCAATGGAGGGACTTCAAGAGATGTGATTCTTTGTAACTCCTTGATTTTGGGATGCTGTCGCAGTAATAGAACGAGACAAGTACTTAAATTGTTTCATTTGATGAAGGATGAAGGAATTAAGCCGGACCATATTACATTTCGAGGCATTTTGTATGCTTGTACTTGTGAAGGTCTTGTTGAGTTGGGAAAGCAGTATTTTGAATCAATGAGCACCGATTATGGTATTGTACCTAGACTAGAGCACTATGAGTGCATGATTGATCTCTACAGCCAGTGTGGGTACATGGATGAGCTTGAAAGTTTTGTAAGGACCATGCCATTTGATCCCACAGTCCCAATGTTAACAAGAGTAGTGGATGCATGTAAAAGACATGGATGCTTGCGATTTGGAAAGTGGGCTGTTCAACGACTTAATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

694

Amino Acids

77.8

Weight (kDa)

7.28

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	128 - 171	1.6e-08	PPR repeat family
PPR	PF01535	128 - 157	2.9e-06	PPR repeat
PPR	PF01535	329 - 359	3e-06	PPR repeat
PPR_2	PF13041	460 - 508	5.5e-07	PPR repeat family
PPR_2	PF13041	560 - 607	2.8e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26540
fragaria_vesca	FvH4_4g16500 FvH4_4g16500 FvH4_4g16500 FvH4_4g16500
malus_domestica	MD10G1008400.v1.1
prunus_persica	Prupe.8G008000_v2.0.a1
pyrus_communis	pycom10g00510
rosa_chinensis	RchiOBHm_Chr4g0415151
rosa_laevigata	RLG00000008092
rosa_multiflora	Rmu_sc0003748.1_g000028
rosa_roxburghii	Rroxscaffold_5G00358960
rosa_rugosa	Rorug04G0132500
rosa_samantha	Rh4AG192500 Rh4BG190700 Rh4CG203400 Rh4DG190400
rosa_wichuraiana	Rw4G016370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	535
Acc16I	TGCGCA	2 cut(s)	948, 1519
Acc36I	ACCTGC	1 cut(s)	535
AccBSI	CCGCTC	1 cut(s)	222
AccI	GTMKAC	2 cut(s)	1106, 1622
AccII	CGCG	3 cut(s)	345, 421, 494
AclWI	GGATC	2 cut(s)	1192, 1979
AcoI	YGGCCR	1 cut(s)	124
AcsI	RAATTY	3 cut(s)	1138, 1339, 1551
AfaI	GTAC	6 cut(s)	852, 1646, 1743, 1822, 1890, 1943
AfiI	CCNNNNNNNGG	2 cut(s)	324, 430
AflIII	ACRYGT	1 cut(s)	1311
AgsI	TTSAA	9 cut(s)	976, 999, 1138, 1232, 1663, 1677, 1862, 1958, 2066
AhdI	GACNNNNNGTC	1 cut(s)	379
AjnI	CCWGG	1 cut(s)	383
AjuI	GAANNNNNNNTTGG	4 cut(s)	575, 607, 1079, 1111
AluBI	AGCT	5 cut(s)	244, 600, 903, 937, 1954
AluI	AGCT	5 cut(s)	244, 600, 903, 937, 1954
Alw21I	GWGCWC	4 cut(s)	602, 905, 1874, 1905
Alw26I	GTCTC	7 cut(s)	148, 255, 330, 366, 901, 1466, 1729
AlwI	GGATC	2 cut(s)	1192, 1979
Ama87I	CYCGRG	3 cut(s)	245, 425, 898
AoxI	GGCC	4 cut(s)	124, 462, 776, 1216
ApoI	RAATTY	3 cut(s)	1138, 1339, 1551
AspLEI	GCGC	4 cut(s)	423, 832, 949, 1520
AspS9I	GGNCC	5 cut(s)	327, 381, 462, 1786, 1971
AsuC2I	CCSGG	2 cut(s)	466, 1009
AsuHPI	GGTGA	6 cut(s)	49, 245, 253, 751, 953, 1352
AsuII	TTCGAA	2 cut(s)	797, 1570
AvaI	CYCGRG	3 cut(s)	245, 425, 898
AvaII	GGWCC	4 cut(s)	327, 381, 1786, 1971
BaeI	ACNNNNGTAYC	2 cut(s)	1581, 1614
BanII	GRGCYC	2 cut(s)	602, 905
BauI	CACGAG	1 cut(s)	508
BbsI	GAAGAC	1 cut(s)	1295
Bbv12I	GWGCWC	4 cut(s)	602, 905, 1874, 1905
BccI	CCATC	7 cut(s)	82, 110, 290, 311, 628, 712, 1381
BceAI	ACGGC	3 cut(s)	125, 391, 763
BcgI	CGANNNNNNTGC	2 cut(s)	529, 563
BciT130I	CCWGG	1 cut(s)	385
BciVI	GTATCC	1 cut(s)	1375
BclI	TGATCA	2 cut(s)	396, 1446
BcnI	CCSGG	2 cut(s)	466, 1009
BcoDI	GTCTC	7 cut(s)	148, 255, 330, 366, 901, 1466, 1729
BfaI	CTAG	5 cut(s)	938, 1167, 1893, 1898, 2080
BfmI	CTRYAG	1 cut(s)	1927
BfuAI	ACCTGC	1 cut(s)	535
BfuI	GTATCC	1 cut(s)	1375
BisI	GCNGC	2 cut(s)	90, 99
BlsI	GCNGC	2 cut(s)	91, 100
BmcAI	AGTACT	1 cut(s)	1743
Bme1390I	CCNGG	3 cut(s)	385, 466, 1009
Bme18I	GGWCC	4 cut(s)	327, 381, 1786, 1971
BmeRI	GACNNNNNGTC	1 cut(s)	379
BmeT110I	CYCGRG	3 cut(s)	245, 425, 898
BmgT120I	GGNCC	5 cut(s)	327, 381, 462, 1786, 1971
BmiI	GGNNCC	5 cut(s)	19, 328, 329, 382, 672
BmrFI	CCNGG	3 cut(s)	385, 466, 1009
BmsI	GCATC	9 cut(s)	631, 747, 934, 1050, 1143, 1452, 1703, 2008, 2027
BoxI	GACNNNNGTC	1 cut(s)	1030
BpiI	GAAGAC	1 cut(s)	1295
BplI	GAGNNNNNCTC	2 cut(s)	881, 913
Bpu14I	TTCGAA	2 cut(s)	797, 1570
BpuEI	CTTGAG	2 cut(s)	734, 1556
BpuMI	CCSGG	2 cut(s)	466, 1009
BsaJI	CCNNGG	3 cut(s)	331, 426, 1593
BsaXI	ACNNNNNCTCC	4 cut(s)	194, 224, 849, 879
Bsc4I	CCNNNNNNNGG	2 cut(s)	324, 430
Bse118I	RCCGGY	1 cut(s)	14
Bse1I	ACTGG	2 cut(s)	1443, 1933
Bse3DI	GCAATG	2 cut(s)	1098, 1472
BseBI	CCWGG	1 cut(s)	385
BseDI	CCNNGG	3 cut(s)	331, 426, 1593
BseLI	CCNNNNNNNGG	2 cut(s)	324, 430
BseMI	GCAATG	2 cut(s)	1098, 1472
BseNI	ACTGG	2 cut(s)	1443, 1933
BseYI	CCCAGC	1 cut(s)	366
Bsh1236I	CGCG	3 cut(s)	345, 421, 494
BshFI	GGCC	4 cut(s)	126, 464, 778, 1218
BsiHKAI	GWGCWC	4 cut(s)	602, 905, 1874, 1905
BsiHKCI	CYCGRG	3 cut(s)	245, 425, 898
BsiSI	CCGG	5 cut(s)	15, 123, 465, 1008, 1784
BslFI	GGGAC	4 cut(s)	313, 454, 1684, 1979
BslI	CCNNNNNNNGG	2 cut(s)	324, 430
BsmAI	GTCTC	7 cut(s)	148, 255, 330, 366, 901, 1466, 1729
BsmBI	CGTCTC	3 cut(s)	148, 330, 366
BsmFI	GGGAC	4 cut(s)	313, 454, 1684, 1979
BsmI	GAATGC	2 cut(s)	805, 1093
BsnI	GGCC	4 cut(s)	126, 464, 778, 1218
BsoBI	CYCGRG	3 cut(s)	245, 425, 898
Bsp119I	TTCGAA	2 cut(s)	797, 1570
Bsp1286I	GDGCHC	4 cut(s)	602, 905, 1874, 1905
Bsp143I	GATC	5 cut(s)	396, 1197, 1446, 1921, 1984
Bsp68I	TCGCGA	1 cut(s)	494
BspANI	GGCC	4 cut(s)	126, 464, 778, 1218
BspFNI	CGCG	3 cut(s)	345, 421, 494
BspHI	TCATGA	1 cut(s)	1563
BspLI	GGNNCC	5 cut(s)	19, 328, 329, 382, 672
BspMI	ACCTGC	1 cut(s)	535
BspPI	GGATC	2 cut(s)	1192, 1979
BspT104I	TTCGAA	2 cut(s)	797, 1570
BsrBI	CCGCTC	1 cut(s)	222
BsrDI	GCAATG	2 cut(s)	1098, 1472
BsrFI	RCCGGY	1 cut(s)	14
BsrI	ACTGG	2 cut(s)	1443, 1933
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	3 cut(s)	331, 426, 1593
BssMI	GATC	5 cut(s)	396, 1197, 1446, 1921, 1984
BssNAI	GTATAC	2 cut(s)	1107, 1623
BssSI	CACGAG	1 cut(s)	508
Bst1107I	GTATAC	2 cut(s)	1107, 1623
Bst2BI	CACGAG	1 cut(s)	508
Bst2UI	CCWGG	1 cut(s)	385
Bst4CI	ACNGT	5 cut(s)	1351, 1387, 1509, 1594, 1993
Bst6I	CTCTTC	5 cut(s)	124, 158, 203, 839, 1122
BstBI	TTCGAA	2 cut(s)	797, 1570
BstC8I	GCNNGC	9 cut(s)	16, 242, 343, 419, 602, 905, 951, 1216, 2042
BstDEI	CTNAG	1 cut(s)	1430
BstDSI	CCRYGG	1 cut(s)	1593
BstFNI	CGCG	3 cut(s)	345, 421, 494
BstHHI	GCGC	4 cut(s)	423, 832, 949, 1520
BstKTI	GATC	5 cut(s)	399, 1200, 1449, 1924, 1987
BstMAI	GTCTC	7 cut(s)	148, 255, 330, 366, 901, 1466, 1729
BstMBI	GATC	5 cut(s)	396, 1197, 1446, 1921, 1984
BstMWI	GCNNNNNNNGC	7 cut(s)	89, 95, 98, 132, 418, 809, 1097
BstNI	CCWGG	1 cut(s)	385
BstNSI	RCATGY	4 cut(s)	953, 1315, 1413, 2025
BstPAI	GACNNNNGTC	1 cut(s)	1030
BstSCI	CCNGG	3 cut(s)	383, 464, 1007
BstSFI	CTRYAG	1 cut(s)	1927
BstUI	CGCG	3 cut(s)	345, 421, 494
BstV2I	GAAGAC	1 cut(s)	1295
BstZ17I	GTATAC	2 cut(s)	1107, 1623
BsuI	GTATCC	1 cut(s)	1375
BsuRI	GGCC	4 cut(s)	126, 464, 778, 1218
BtgI	CCRYGG	1 cut(s)	1593
BtsIMutI	CAGTG	1 cut(s)	1940
BtuMI	TCGCGA	1 cut(s)	494
BveI	ACCTGC	1 cut(s)	535
Cac8I	GCNNGC	9 cut(s)	16, 242, 343, 419, 602, 905, 951, 1216, 2042
CciI	TCATGA	1 cut(s)	1563
CfoI	GCGC	4 cut(s)	423, 832, 949, 1520
Cfr10I	RCCGGY	1 cut(s)	14
Cfr13I	GGNCC	5 cut(s)	327, 381, 462, 1786, 1971
CseI	GACGC	1 cut(s)	347
Csp6I	GTAC	6 cut(s)	851, 1645, 1742, 1821, 1889, 1942
CspCI	CAANNNNNGTGG	2 cut(s)	1995, 2030
CviQI	GTAC	6 cut(s)	851, 1645, 1742, 1821, 1889, 1942
DdeI	CTNAG	1 cut(s)	1430
DpnI	GATC	5 cut(s)	398, 1199, 1448, 1923, 1986
DpnII	GATC	5 cut(s)	396, 1197, 1446, 1921, 1984
DriI	GACNNNNNGTC	1 cut(s)	379
EaeI	YGGCCR	1 cut(s)	124
Eam1104I	CTCTTC	5 cut(s)	124, 158, 203, 839, 1122
Eam1105I	GACNNNNNGTC	1 cut(s)	379
EarI	CTCTTC	5 cut(s)	124, 158, 203, 839, 1122
Ecl136II	GAGCTC	2 cut(s)	600, 903
Eco24I	GRGCYC	2 cut(s)	602, 905
Eco32I	GATATC	1 cut(s)	1080
Eco47I	GGWCC	4 cut(s)	327, 381, 1786, 1971
Eco53kI	GAGCTC	2 cut(s)	600, 903
Eco88I	CYCGRG	3 cut(s)	245, 425, 898
EcoICRI	GAGCTC	2 cut(s)	600, 903
EcoO109I	RGGNCCY	2 cut(s)	327, 381
EcoRII	CCWGG	1 cut(s)	383
EcoRV	GATATC	1 cut(s)	1080
EcoT22I	ATGCAT	1 cut(s)	2023
EcoT38I	GRGCYC	2 cut(s)	602, 905
Esp3I	CGTCTC	3 cut(s)	148, 330, 366
FalI	AAGNNNNNCTT	2 cut(s)	1173, 1205
FaqI	GGGAC	4 cut(s)	313, 454, 1684, 1979
FauI	CCCGC	7 cut(s)	227, 245, 317, 371, 572, 760, 923
FbaI	TGATCA	2 cut(s)	396, 1446
FblI	GTMKAC	2 cut(s)	1106, 1622
Fnu4HI	GCNGC	2 cut(s)	90, 99
FriOI	GRGCYC	2 cut(s)	602, 905
Fsp4HI	GCNGC	2 cut(s)	90, 99
FspAI	RTGCGCAY	1 cut(s)	948
FspBI	CTAG	5 cut(s)	938, 1167, 1893, 1898, 2080
FspI	TGCGCA	2 cut(s)	948, 1519
GlaI	GCGC	4 cut(s)	422, 831, 948, 1519
GluI	GCNGC	2 cut(s)	90, 99
GsaI	CCCAGC	1 cut(s)	370
HaeIII	GGCC	4 cut(s)	126, 464, 778, 1218
HapII	CCGG	5 cut(s)	15, 123, 465, 1008, 1784
HgaI	GACGC	1 cut(s)	347
HhaI	GCGC	4 cut(s)	423, 832, 949, 1520
Hin6I	GCGC	4 cut(s)	421, 830, 947, 1518
HinP1I	GCGC	4 cut(s)	421, 830, 947, 1518
HincII	GTYRAC	3 cut(s)	1407, 1615, 2004
HindII	GTYRAC	3 cut(s)	1407, 1615, 2004
HinfI	GANTC	7 cut(s)	248, 308, 784, 1254, 1567, 1687, 1862
HpaI	GTTAAC	1 cut(s)	2004
HpaII	CCGG	5 cut(s)	15, 123, 465, 1008, 1784
HphI	GGTGA	6 cut(s)	49, 245, 253, 751, 953, 1352
Hpy166II	GTNNAC	7 cut(s)	1025, 1107, 1407, 1436, 1615, 1623, 2004
Hpy188I	TCNGA	4 cut(s)	79, 335, 1225, 1601
Hpy188III	TCNNGA	6 cut(s)	493, 713, 898, 1201, 1564, 1677
Hpy8I	GTNNAC	7 cut(s)	1025, 1107, 1407, 1436, 1615, 1623, 2004
Hpy99I	CGWCG	2 cut(s)	359, 1036
HpyAV	CCTTC	6 cut(s)	181, 274, 1030, 1759, 1766, 1823
HpyCH4III	ACNGT	5 cut(s)	1351, 1387, 1509, 1594, 1993
HpyCH4IV	ACGT	2 cut(s)	443, 1031
HpyCH4V	TGCA	9 cut(s)	550, 803, 1091, 1156, 1465, 1499, 1532, 1914, 2021
HpyF10VI	GCNNNNNNNGC	7 cut(s)	89, 95, 98, 132, 418, 809, 1097
HpyF3I	CTNAG	1 cut(s)	1430
HpySE526I	ACGT	2 cut(s)	443, 1031
HspAI	GCGC	4 cut(s)	421, 830, 947, 1518
KflI	GGGWCCC	1 cut(s)	327
KroI	GCCGGC	1 cut(s)	14
KroNI	GCCGGC	1 cut(s)	16
Ksp22I	TGATCA	2 cut(s)	396, 1446
KspAI	GTTAAC	1 cut(s)	2004
Kzo9I	GATC	5 cut(s)	396, 1197, 1446, 1921, 1984
LmnI	GCTCC	5 cut(s)	23, 215, 227, 597, 670
LweI	GCATC	9 cut(s)	631, 747, 934, 1050, 1143, 1452, 1703, 2008, 2027
MaeI	CTAG	5 cut(s)	938, 1167, 1893, 1898, 2080
MaeII	ACGT	2 cut(s)	443, 1031
MaeIII	GTNAC	7 cut(s)	259, 484, 1112, 1183, 1328, 1577, 1694
MalI	GATC	5 cut(s)	398, 1199, 1448, 1923, 1986
MbiI	CCGCTC	1 cut(s)	222
MboI	GATC	5 cut(s)	396, 1197, 1446, 1921, 1984
MboII	GAAGA	8 cut(s)	111, 145, 190, 277, 856, 1139, 1295, 1444
MfeI	CAATTG	1 cut(s)	999
MhlI	GDGCHC	4 cut(s)	602, 905, 1874, 1905
MluCI	AATT	6 cut(s)	999, 1138, 1339, 1551, 1748, 1776
MlyI	GAGTC	3 cut(s)	257, 317, 793
MmeI	TCCRAC	1 cut(s)	1273
Mph1103I	ATGCAT	1 cut(s)	2023
MroNI	GCCGGC	1 cut(s)	14
MseI	TTAA	7 cut(s)	867, 1641, 1653, 1746, 1779, 2003, 2073
MslI	CAYNNNNRTG	1 cut(s)	1431
MspI	CCGG	5 cut(s)	15, 123, 465, 1008, 1784
MspR9I	CCNGG	3 cut(s)	385, 466, 1009
MunI	CAATTG	1 cut(s)	999
Mva1269I	GAATGC	2 cut(s)	805, 1093
MvaI	CCWGG	1 cut(s)	385
MvnI	CGCG	3 cut(s)	345, 421, 494
MwoI	GCNNNNNNNGC	7 cut(s)	89, 95, 98, 132, 418, 809, 1097
NaeI	GCCGGC	1 cut(s)	16
NciI	CCSGG	2 cut(s)	466, 1009
NdeII	GATC	5 cut(s)	396, 1197, 1446, 1921, 1984
NgoMIV	GCCGGC	1 cut(s)	14
NlaIV	GGNNCC	5 cut(s)	19, 328, 329, 382, 672
NmuCI	GTSAC	2 cut(s)	259, 1183
NruI	TCGCGA	1 cut(s)	494
NsbI	TGCGCA	2 cut(s)	948, 1519
NsiI	ATGCAT	1 cut(s)	2023
NspI	RCATGY	4 cut(s)	953, 1315, 1413, 2025
NspV	TTCGAA	2 cut(s)	797, 1570
PaeI	GCATGC	1 cut(s)	953
PaeR7I	CTCGAG	2 cut(s)	245, 898
PagI	TCATGA	1 cut(s)	1563
PaqCI	CACCTGC	1 cut(s)	535
PciI	ACATGT	1 cut(s)	1311
PcsI	WCGNNNNNNNCGW	1 cut(s)	1037
PctI	GAATGC	2 cut(s)	805, 1093
PdiI	GCCGGC	1 cut(s)	16
PfeI	GAWTC	4 cut(s)	1254, 1567, 1687, 1862
PflFI	GACNNNGTC	1 cut(s)	1181
PfoI	TCCNGGA	1 cut(s)	383
PkrI	GCNGC	2 cut(s)	91, 100
PleI	GAGTC	3 cut(s)	256, 316, 792
PpsI	GAGTC	3 cut(s)	256, 316, 792
PpuMI	RGGWCCY	2 cut(s)	327, 381
PscI	ACATGT	1 cut(s)	1311
PshAI	GACNNNNGTC	1 cut(s)	1030
Psp124BI	GAGCTC	2 cut(s)	602, 905
Psp5II	RGGWCCY	2 cut(s)	327, 381
Psp6I	CCWGG	1 cut(s)	383
PspFI	CCCAGC	1 cut(s)	366
PspGI	CCWGG	1 cut(s)	383
PspN4I	GGNNCC	5 cut(s)	19, 328, 329, 382, 672
PspPI	GGNCC	5 cut(s)	327, 381, 462, 1786, 1971
PspPPI	RGGWCCY	2 cut(s)	327, 381
PspXI	VCTCGAGB	1 cut(s)	245
PsyI	GACNNNGTC	1 cut(s)	1181
RruI	TCGCGA	1 cut(s)	494
RsaI	GTAC	6 cut(s)	852, 1646, 1743, 1822, 1890, 1943
RsaNI	GTAC	6 cut(s)	851, 1645, 1742, 1821, 1889, 1942
RseI	CAYNNNNRTG	1 cut(s)	1431
SacI	GAGCTC	2 cut(s)	602, 905
SaqAI	TTAA	7 cut(s)	867, 1641, 1653, 1746, 1779, 2003, 2073
SatI	GCNGC	2 cut(s)	90, 99
Sau3AI	GATC	5 cut(s)	396, 1197, 1446, 1921, 1984
Sau96I	GGNCC	5 cut(s)	327, 381, 462, 1786, 1971
ScaI	AGTACT	1 cut(s)	1743
SchI	GAGTC	3 cut(s)	257, 317, 793
ScrFI	CCNGG	3 cut(s)	385, 466, 1009
SduI	GDGCHC	4 cut(s)	602, 905, 1874, 1905
SfaNI	GCATC	9 cut(s)	631, 747, 934, 1050, 1143, 1452, 1703, 2008, 2027
SfcI	CTRYAG	1 cut(s)	1927
Sfr274I	CTCGAG	2 cut(s)	245, 898
SfuI	TTCGAA	2 cut(s)	797, 1570
SinI	GGWCC	4 cut(s)	327, 381, 1786, 1971
SlaI	CTCGAG	2 cut(s)	245, 898
SmiMI	CAYNNNNRTG	1 cut(s)	1431
SmlI	CTYRAG	4 cut(s)	245, 713, 898, 1535
SmoI	CTYRAG	4 cut(s)	245, 713, 898, 1535
SphI	GCATGC	1 cut(s)	953
Sse9I	AATT	6 cut(s)	999, 1138, 1339, 1551, 1748, 1776
SspI	AATATT	1 cut(s)	1525
SspMI	CTAG	5 cut(s)	938, 1167, 1893, 1898, 2080
SstI	GAGCTC	2 cut(s)	602, 905
StyD4I	CCNGG	3 cut(s)	383, 464, 1007
TaaI	ACNGT	5 cut(s)	1351, 1387, 1509, 1594, 1993
TaiI	ACGT	2 cut(s)	446, 1034
TasI	AATT	6 cut(s)	999, 1138, 1339, 1551, 1748, 1776
TatI	WGTACW	2 cut(s)	1741, 1820
TauI	GCSGC	2 cut(s)	92, 101
TfiI	GAWTC	4 cut(s)	1254, 1567, 1687, 1862
Tru1I	TTAA	7 cut(s)	867, 1641, 1653, 1746, 1779, 2003, 2073
Tru9I	TTAA	7 cut(s)	867, 1641, 1653, 1746, 1779, 2003, 2073
TscAI	CASTG	1 cut(s)	1940
TseFI	GTSAC	2 cut(s)	259, 1183
Tsp45I	GTSAC	2 cut(s)	259, 1183
TspDTI	ATGAA	8 cut(s)	470, 1238, 1246, 1544, 1552, 1745, 1778, 1785
TspGWI	ACGGA	2 cut(s)	10, 1084
TspRI	CASTG	1 cut(s)	1940
Tth111I	GACNNNGTC	1 cut(s)	1181
VpaK11BI	GGWCC	4 cut(s)	327, 381, 1786, 1971
XapI	RAATTY	3 cut(s)	1138, 1339, 1551
XceI	RCATGY	4 cut(s)	953, 1315, 1413, 2025
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1187
XhoI	CTCGAG	2 cut(s)	245, 898
XmiI	GTMKAC	2 cut(s)	1106, 1622
XspI	CTAG	5 cut(s)	938, 1167, 1893, 1898, 2080
ZrmI	AGTACT	1 cut(s)	1743
Zsp2I	ATGCAT	1 cut(s)	2023

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.