Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0013521

Physical Location & Seq

Genomic Coordinates Forward (+)

546883 .. 548355

Gene Structure 1473 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g00510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

ATGGGCGGCAATTCTCTGTTAAACCTTCTTCTCTGCGACAAAGGTCATCTGACAAAACCCTCAAATCCCGCCACCGCCAAAGCCGTTACCACCACCATTCTCAACCACCTCGACTCCGGCCGTCTCCGAAAAGCCGTCTCAATCCTCTTTTATGCCCCATTCCCCTTCCATTTTTCTCTATACGCTCGACTCTTCCAGCTCTGTTCCTCCACCGGCAGCCGCGCCATTGTCGAGGCCCGCAAGGTCGAGTCCCATTTGTTTACTTTCTCCCCCACCCCGCCGGTGTTTCTAGTGAACCGTGCCATCGAGGCCTTTGCGAAATGCGGGTCTTTGGGGGATGCGAGGGAGCTGTTCGAGGAAATGCCTCAGAGAGATGGGGGGTCTTGGAATGCTCTGATAACGGCGTGCTCACAAAGTGGGTCTCCTGAGGAAGCCTTTCGCTTGTTTGTGAAAATGAGTAGGTCAGGTTTTTTGCCGAATGAAATTACGTTTGCTAGTGTTCTTGGCTCCTGTGCTGCTGTTTTGGCGCTTTCGCTTTCGAGGCAAGTTCATGGGCTAATTGTCAAGTATGGTTTTGGCGGGAATGTGGTTATAGGGAGTTCACTTGTTGACATATACGGGAAATGCGTGATTATGGATGATGCCCGTAAAATATTTGACGAGATTAAGAACCCGAATGCCATTTCATGGAACATAATCGTGAGGCGGTATCTGGAGATGGGTGAAGGAGAGGAGGCAATAGTTATGTTTTTCCAGATGTTTAAGGCAGCTGTAAGGCCACTTAAGTTTACCTTTTCTAATGCTCTTGTTGCTTGTTCGAGTATTTCTGCACTTGATGAGGGGATACAGATTCATGGAGTTGCAATTAAAATGGGGTTCGATGACGATGAGATTGTTTCAAGCTCCCTTATCGATATGTATGCCAAGTGTGGGGATTTAGAGAGTGCCAGTGCAATTTTTGACCAGCCCAATTCAAAAGATGTGATTTCTTGGACTTCAATTGTTTCTGGGTATGCAATGAGTGGAAAGACATGGAAGGCCAGAGAGCTCTTCGATGAGATGCCCGAACGCAATGTAATATCTTGGAATGCAATGCTGGCCGGGTATGCTCGTTACTCCCAGTGGGAAGAGGCAGTGGATTTTATATTTTTGATGCGGAACACAACCAATAATATAGATCAAGTCACTCTTGGGTTGATCCTCAAGGTGTGTGCTGGCCTTTCAGATGTGGAATTGGGGAAACAGGTGCATGGATTCATATACCGGCACGGTTTCTCTTCCAGTATATTTGTTGGCAATGGCCTTCTTCACATGTATAGTAAATGTGGGAAAATGAGAAGTGCCAAAACAGTCTGGTTTCACCAAATTAGTCACTGGCGGGATAGAGTTTCTTCAAATGCTTTGTTGAGTAGCTATGCTCGTCGTGGCCGGAGTGAACTAGCTATGACAATTTTCTGCGAGATGCAATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

491

Amino Acids

54.31

Weight (kDa)

8.22

Isoelectric Point (pI)

44.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	128 - 172	1.3e-10	PPR repeat family
PPR	PF01535	128 - 157	1.1e-07	PPR repeat
PPR	PF01535	329 - 359	6.5e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26540
fragaria_vesca	FvH4_4g16500 FvH4_4g16500 FvH4_4g16500 FvH4_4g16500
malus_domestica	MD10G1008400.v1.1
prunus_persica	Prupe.8G008000_v2.0.a1
pyrus_communis	pycom10g00510
rosa_chinensis	RchiOBHm_Chr4g0415151
rosa_laevigata	RLG00000008092
rosa_multiflora	Rmu_sc0003748.1_g000028
rosa_roxburghii	Rroxscaffold_5G00358960
rosa_rugosa	Rorug04G0132500
rosa_samantha	Rh4AG192500 Rh4BG190700 Rh4CG203400 Rh4DG190400
rosa_wichuraiana	Rw4G016370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	687
AccII	CGCG	1 cut(s)	222
AclWI	GGATC	1 cut(s)	1192
AcoI	YGGCCR	3 cut(s)	118, 1098, 1426
AdeI	CACNNNGTG	1 cut(s)	416
AfiI	CCNNNNNNNGG	2 cut(s)	687, 930
AflII	CTTAAG	1 cut(s)	782
AflIII	ACRYGT	1 cut(s)	1311
AgsI	TTSAA	4 cut(s)	900, 975, 999, 1395
AluBI	AGCT	7 cut(s)	199, 349, 770, 903, 1048, 1413, 1442
AluI	AGCT	7 cut(s)	199, 349, 770, 903, 1048, 1413, 1442
Alw21I	GWGCWC	2 cut(s)	410, 1050
Alw26I	GTCTC	3 cut(s)	128, 142, 426
AlwI	GGATC	1 cut(s)	1192
AoxI	GGCC	9 cut(s)	118, 234, 309, 776, 1038, 1098, 1216, 1300, 1426
ApeKI	GCWGC	3 cut(s)	216, 515, 767
ArsI	GACNNNNNNTTYG	2 cut(s)	311, 343
Asp700I	GAANNNNTTC	1 cut(s)	435
AspLEI	GCGC	2 cut(s)	224, 529
AspS9I	GGNCC	1 cut(s)	235
AsuC2I	CCSGG	1 cut(s)	1102
AsuHPI	GGTGA	2 cut(s)	734, 1352
AxyI	CCTNAGG	1 cut(s)	426
BanII	GRGCYC	1 cut(s)	1050
Bbv12I	GWGCWC	2 cut(s)	410, 1050
BbvI	GCAGC	3 cut(s)	228, 502, 779
BccI	CCATC	3 cut(s)	311, 368, 712
BceAI	ACGGC	4 cut(s)	68, 105, 119, 417
BcgI	CGANNNNNNTGC	4 cut(s)	296, 330, 902, 936
BciVI	GTATCC	1 cut(s)	837
BcnI	CCSGG	1 cut(s)	1102
BcoDI	GTCTC	3 cut(s)	128, 142, 426
BfaI	CTAG	3 cut(s)	290, 495, 1439
BfoI	RGCGCY	1 cut(s)	530
BfrI	CTTAAG	1 cut(s)	782
BfuI	GTATCC	1 cut(s)	837
BglI	GCCNNNNNGGC	1 cut(s)	308
BisI	GCNGC	5 cut(s)	7, 217, 220, 516, 768
BlsI	GCNGC	5 cut(s)	8, 218, 221, 517, 769
Bme1390I	CCNGG	1 cut(s)	1102
BmgT120I	GGNCC	1 cut(s)	235
BmiI	GGNNCC	1 cut(s)	508
BmrFI	CCNGG	1 cut(s)	1102
BmrI	ACTGGG	1 cut(s)	1114
BmsI	GCATC	5 cut(s)	328, 631, 1050, 1143, 1452
BmuI	ACTGGG	1 cut(s)	1114
BoxI	GACNNNNGTC	1 cut(s)	42
BpmI	CTGGAG	1 cut(s)	734
BpuEI	CTTGAG	1 cut(s)	1187
BpuMI	CCSGG	1 cut(s)	1102
Bsa29I	ATCGAT	1 cut(s)	912
BsaI	GGTCTC	1 cut(s)	426
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	2 cut(s)	687, 930
Bse118I	RCCGGY	3 cut(s)	212, 280, 1263
Bse1I	ACTGG	4 cut(s)	948, 1120, 1281, 1379
Bse21I	CCTNAGG	1 cut(s)	426
Bse3DI	GCAATG	5 cut(s)	1023, 1078, 1098, 1303, 1472
BseCI	ATCGAT	1 cut(s)	912
BseGI	GGATG	2 cut(s)	343, 643
BseLI	CCNNNNNNNGG	2 cut(s)	687, 930
BseMI	GCAATG	5 cut(s)	1023, 1078, 1098, 1303, 1472
BseMII	CTCAG	2 cut(s)	380, 417
BseNI	ACTGG	4 cut(s)	948, 1120, 1281, 1379
BseRI	GAGGAG	1 cut(s)	746
BseX3I	CGGCCG	1 cut(s)	118
BseXI	GCAGC	3 cut(s)	228, 502, 779
BsgI	GTGCAG	1 cut(s)	813
Bsh1236I	CGCG	1 cut(s)	222
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	9 cut(s)	120, 236, 311, 778, 1040, 1100, 1218, 1302, 1428
BshVI	ATCGAT	1 cut(s)	912
BsiEI	CGRYCG	1 cut(s)	121
BsiHKAI	GWGCWC	2 cut(s)	410, 1050
BsiSI	CCGG	6 cut(s)	117, 213, 281, 1101, 1264, 1429
BslFI	GGGAC	1 cut(s)	235
BslI	CCNNNNNNNGG	2 cut(s)	687, 930
BsmAI	GTCTC	3 cut(s)	128, 142, 426
BsmBI	CGTCTC	2 cut(s)	128, 142
BsmFI	GGGAC	1 cut(s)	235
BsmI	GAATGC	3 cut(s)	394, 682, 1093
BsnI	GGCC	9 cut(s)	120, 236, 311, 778, 1040, 1100, 1218, 1302, 1428
Bso31I	GGTCTC	1 cut(s)	426
Bsp1286I	GDGCHC	2 cut(s)	410, 1050
Bsp143I	GATC	2 cut(s)	1177, 1197
BspANI	GGCC	9 cut(s)	120, 236, 311, 778, 1040, 1100, 1218, 1302, 1428
BspCNI	CTCAG	2 cut(s)	379, 418
BspDI	ATCGAT	1 cut(s)	912
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	508
BspPI	GGATC	1 cut(s)	1192
BspQI	GCTCTTC	1 cut(s)	1055
BspTI	CTTAAG	1 cut(s)	782
BspTNI	GGTCTC	1 cut(s)	426
BsrDI	GCAATG	5 cut(s)	1023, 1078, 1098, 1303, 1472
BsrFI	RCCGGY	3 cut(s)	212, 280, 1263
BsrI	ACTGG	4 cut(s)	948, 1120, 1281, 1379
BssAI	RCCGGY	3 cut(s)	212, 280, 1263
BssMI	GATC	2 cut(s)	1177, 1197
Bst4CI	ACNGT	3 cut(s)	299, 1271, 1351
Bst6I	CTCTTC	4 cut(s)	197, 1055, 1122, 1282
BstAFI	CTTAAG	1 cut(s)	782
BstC8I	GCNNGC	4 cut(s)	238, 406, 1098, 1216
BstDEI	CTNAG	2 cut(s)	366, 426
BstF5I	GGATG	2 cut(s)	343, 643
BstFNI	CGCG	1 cut(s)	222
BstH2I	RGCGCY	1 cut(s)	530
BstHHI	GCGC	2 cut(s)	224, 529
BstKTI	GATC	2 cut(s)	1180, 1200
BstMAI	GTCTC	3 cut(s)	128, 142, 426
BstMBI	GATC	2 cut(s)	1177, 1197
BstMCI	CGRYCG	1 cut(s)	121
BstMWI	GCNNNNNNNGC	6 cut(s)	308, 524, 541, 809, 1097, 1106
BstNSI	RCATGY	1 cut(s)	1315
BstPAI	GACNNNNGTC	1 cut(s)	42
BstSCI	CCNGG	1 cut(s)	1100
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	3 cut(s)	228, 502, 779
BstZI	CGGCCG	1 cut(s)	118
Bsu15I	ATCGAT	1 cut(s)	912
Bsu36I	CCTNAGG	1 cut(s)	426
BsuI	GTATCC	1 cut(s)	837
BsuRI	GGCC	9 cut(s)	120, 236, 311, 778, 1040, 1100, 1218, 1302, 1428
BsuTUI	ATCGAT	1 cut(s)	912
BtsCI	GGATG	2 cut(s)	343, 643
BtsI	GCAGTG	1 cut(s)	1140
BtsIMutI	CAGTG	4 cut(s)	955, 1127, 1140, 1372
Cac8I	GCNNGC	4 cut(s)	238, 406, 1098, 1216
CfoI	GCGC	2 cut(s)	224, 529
Cfr10I	RCCGGY	3 cut(s)	212, 280, 1263
Cfr13I	GGNCC	1 cut(s)	235
ClaI	ATCGAT	1 cut(s)	912
CviAII	CATG	6 cut(s)	551, 687, 854, 1032, 1250, 1312
DdeI	CTNAG	2 cut(s)	366, 426
DpnI	GATC	2 cut(s)	1179, 1199
DpnII	GATC	2 cut(s)	1177, 1197
DraIII	CACNNNGTG	1 cut(s)	416
EaeI	YGGCCR	3 cut(s)	118, 1098, 1426
EagI	CGGCCG	1 cut(s)	118
Eam1104I	CTCTTC	4 cut(s)	197, 1055, 1122, 1282
EarI	CTCTTC	4 cut(s)	197, 1055, 1122, 1282
Ecl136II	GAGCTC	1 cut(s)	1048
EclXI	CGGCCG	1 cut(s)	118
Eco147I	AGGCCT	1 cut(s)	311
Eco24I	GRGCYC	1 cut(s)	1050
Eco31I	GGTCTC	1 cut(s)	426
Eco52I	CGGCCG	1 cut(s)	118
Eco53kI	GAGCTC	1 cut(s)	1048
Eco81I	CCTNAGG	1 cut(s)	426
EcoICRI	GAGCTC	1 cut(s)	1048
EcoT38I	GRGCYC	1 cut(s)	1050
Esp3I	CGTCTC	2 cut(s)	128, 142
FaeI	CATG	6 cut(s)	554, 690, 857, 1035, 1253, 1315
FalI	AAGNNNNNCTT	4 cut(s)	776, 808, 1173, 1205
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	6 cut(s)	550, 686, 853, 1031, 1249, 1311
FauI	CCCGC	6 cut(s)	76, 245, 285, 317, 572, 1371
Fnu4HI	GCNGC	5 cut(s)	7, 217, 220, 516, 768
FokI	GGATG	2 cut(s)	350, 650
FriOI	GRGCYC	1 cut(s)	1050
Fsp4HI	GCNGC	5 cut(s)	7, 217, 220, 516, 768
FspBI	CTAG	3 cut(s)	290, 495, 1439
GlaI	GCGC	2 cut(s)	223, 528
GluI	GCNGC	5 cut(s)	7, 217, 220, 516, 768
GsuI	CTGGAG	1 cut(s)	734
HaeII	RGCGCY	1 cut(s)	530
HaeIII	GGCC	9 cut(s)	120, 236, 311, 778, 1040, 1100, 1218, 1302, 1428
HapII	CCGG	6 cut(s)	117, 213, 281, 1101, 1264, 1429
HhaI	GCGC	2 cut(s)	224, 529
Hin1II	CATG	6 cut(s)	554, 690, 857, 1035, 1253, 1315
Hin6I	GCGC	2 cut(s)	222, 527
HinP1I	GCGC	2 cut(s)	222, 527
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HinfI	GANTC	5 cut(s)	113, 189, 248, 850, 1254
HpaII	CCGG	6 cut(s)	117, 213, 281, 1101, 1264, 1429
HphI	GGTGA	2 cut(s)	734, 1352
Hpy166II	GTNNAC	6 cut(s)	261, 295, 602, 610, 789, 1436
Hpy188I	TCNGA	5 cut(s)	51, 128, 369, 396, 1225
Hpy188III	TCNNGA	4 cut(s)	425, 700, 713, 754
Hpy8I	GTNNAC	6 cut(s)	261, 295, 602, 610, 789, 1436
Hpy99I	CGWCG	1 cut(s)	1425
HpyAV	CCTTC	5 cut(s)	35, 175, 719, 1030, 1313
HpyCH4III	ACNGT	3 cut(s)	299, 1271, 1351
HpyCH4IV	ACGT	1 cut(s)	488
HpyCH4V	TGCA	7 cut(s)	830, 863, 953, 1016, 1091, 1249, 1465
HpyF10VI	GCNNNNNNNGC	6 cut(s)	308, 524, 541, 809, 1097, 1106
HpyF3I	CTNAG	2 cut(s)	366, 426
HpySE526I	ACGT	1 cut(s)	488
Hsp92II	CATG	6 cut(s)	554, 690, 857, 1035, 1253, 1315
HspAI	GCGC	2 cut(s)	222, 527
Kzo9I	GATC	2 cut(s)	1177, 1197
LguI	GCTCTTC	1 cut(s)	1055
LmnI	GCTCC	3 cut(s)	346, 512, 908
Lsp1109I	GCAGC	3 cut(s)	228, 502, 779
LweI	GCATC	5 cut(s)	328, 631, 1050, 1143, 1452
MaeI	CTAG	3 cut(s)	290, 495, 1439
MaeII	ACGT	1 cut(s)	488
MaeIII	GTNAC	4 cut(s)	85, 1112, 1183, 1370
MalI	GATC	2 cut(s)	1179, 1199
MboI	GATC	2 cut(s)	1177, 1197
MboII	GAAGA	7 cut(s)	20, 184, 1042, 1139, 1269, 1298, 1383
MfeI	CAATTG	1 cut(s)	999
MhlI	GDGCHC	2 cut(s)	410, 1050
MlyI	GAGTC	3 cut(s)	107, 183, 257
MroXI	GAANNNNTTC	1 cut(s)	435
MseI	TTAA	5 cut(s)	20, 666, 762, 783, 867
MslI	CAYNNNNRTG	1 cut(s)	698
MspA1I	CMGCKG	1 cut(s)	770
MspCI	CTTAAG	1 cut(s)	782
MspI	CCGG	6 cut(s)	117, 213, 281, 1101, 1264, 1429
MspR9I	CCNGG	1 cut(s)	1102
MunI	CAATTG	1 cut(s)	999
Mva1269I	GAATGC	3 cut(s)	394, 682, 1093
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	6 cut(s)	308, 524, 541, 809, 1097, 1106
NciI	CCSGG	1 cut(s)	1102
NdeII	GATC	2 cut(s)	1177, 1197
NlaIII	CATG	6 cut(s)	554, 690, 857, 1035, 1253, 1315
NlaIV	GGNNCC	1 cut(s)	508
NmuCI	GTSAC	2 cut(s)	1183, 1370
NspI	RCATGY	1 cut(s)	1315
PceI	AGGCCT	1 cut(s)	311
PciI	ACATGT	1 cut(s)	1311
PciSI	GCTCTTC	1 cut(s)	1055
PcsI	WCGNNNNNNNCGW	1 cut(s)	624
PctI	GAATGC	3 cut(s)	394, 682, 1093
PdmI	GAANNNNTTC	1 cut(s)	435
PfeI	GAWTC	2 cut(s)	850, 1254
PflMI	CCANNNNNTGG	1 cut(s)	687
PkrI	GCNGC	5 cut(s)	8, 218, 221, 517, 769
PleI	GAGTC	3 cut(s)	107, 183, 256
PpsI	GAGTC	3 cut(s)	107, 183, 256
PscI	ACATGT	1 cut(s)	1311
PshAI	GACNNNNGTC	1 cut(s)	42
Psp124BI	GAGCTC	1 cut(s)	1050
PspN4I	GGNNCC	1 cut(s)	508
PspPI	GGNCC	1 cut(s)	235
PvuII	CAGCTG	1 cut(s)	770
RseI	CAYNNNNRTG	1 cut(s)	698
SacI	GAGCTC	1 cut(s)	1050
SapI	GCTCTTC	1 cut(s)	1055
SaqAI	TTAA	5 cut(s)	20, 666, 762, 783, 867
SatI	GCNGC	5 cut(s)	7, 217, 220, 516, 768
Sau3AI	GATC	2 cut(s)	1177, 1197
Sau96I	GGNCC	1 cut(s)	235
SchI	GAGTC	3 cut(s)	107, 183, 257
ScrFI	CCNGG	1 cut(s)	1102
SduI	GDGCHC	2 cut(s)	410, 1050
SfaNI	GCATC	5 cut(s)	328, 631, 1050, 1143, 1452
SgrAI	CRCCGGYG	1 cut(s)	280
SmiMI	CAYNNNNRTG	1 cut(s)	698
SmlI	CTYRAG	2 cut(s)	782, 1202
SmoI	CTYRAG	2 cut(s)	782, 1202
SseBI	AGGCCT	1 cut(s)	311
SspI	AATATT	1 cut(s)	654
SspMI	CTAG	3 cut(s)	290, 495, 1439
SstI	GAGCTC	1 cut(s)	1050
StuI	AGGCCT	1 cut(s)	311
StyD4I	CCNGG	1 cut(s)	1100
TaaI	ACNGT	3 cut(s)	299, 1271, 1351
TaiI	ACGT	1 cut(s)	491
TauI	GCSGC	2 cut(s)	9, 222
TfiI	GAWTC	2 cut(s)	850, 1254
Tru1I	TTAA	5 cut(s)	20, 666, 762, 783, 867
Tru9I	TTAA	5 cut(s)	20, 666, 762, 783, 867
TscAI	CASTG	4 cut(s)	955, 1127, 1140, 1379
TseFI	GTSAC	2 cut(s)	1183, 1370
TseI	GCWGC	3 cut(s)	216, 515, 767
Tsp45I	GTSAC	2 cut(s)	1183, 1370
TspDTI	ATGAA	5 cut(s)	495, 539, 675, 842, 1246
TspRI	CASTG	4 cut(s)	955, 1127, 1140, 1379
Van91I	CCANNNNNTGG	1 cut(s)	687
Vha464I	CTTAAG	1 cut(s)	782
XceI	RCATGY	1 cut(s)	1315
XmnI	GAANNNNTTC	1 cut(s)	435
XspI	CTAG	3 cut(s)	290, 495, 1439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.