Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0013521

Physical Location & Seq

Genomic Coordinates Reverse (-)

25507942 .. 25512872

Gene Structure 4931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008092

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2967 bp

ATGGGGAAGAAGGTTAAGAAGAAGGCTAGAGCTTCTCAAAAGGAGAAGTGGGTTCCATCTGATTCCCCGAAGAAGGTTGCCAAACCAAGCAACCCAAGCGTTAGGGATGATGGTGATGATGGAGTTTCAGTTGCAAAAGTGAGAAAAGCTTGTCCTCACATTGACAAGGGTGTTGATTTGAATAAATTGCAAGCTAAAATTGGGTCTTCAGCAGTTATTAGGTGTGAAGATTGTAGGGAAGGCGCCATTGATAGGAAGGGGGGTAAAGGAAAGGGCAAACATGGTAAGAAGAAAGGAGGTCCTGATTCTAAATCCGAGTCAAAATCTGTATGGCTTTGTTTAGAATGCGGTCATTATGCTTGTGGTGGGGTTGGACTTCCAATAACCCCTCAGTGCCACGCAGTTCGGCATGCAAGGCAAACTCGTCACCCATTGGTGGTGCGGTTTGAAAACCCACAGTTGCGATGGTGCTTCCAGTGCAGCACACTTATTACCATTGATAAGACGGGGGAGGATGGTGAAGAGAAAGATCCCATTCAACTTCGCGACCACCAATTCTCACTTGAGGAAGATCACAGTAATGGTGAAGACATTGGTGCCAATGCTTTACTAAGTAAATCTGCCGTAGGTGTTGGTCTTCATGAAGGTAACCATAACGAGCTGCAGGATGGATCAGTCTTATTGGGAATTGGAGGAACGGCGCTTGAGGCTCACCTTCCTAAGATAGCACTAGGAGGCAATAGTGTCAGTGCTTCAAACTTAATCGGTGGAGCCGGCTCCGTGATAAACCGACTTCTCTACGACAAAGGTCATCTAACCAAACCTTCCCACCCAACTGAAGCCAAAGCCGTAACCAGCGCAATCCTCACTCACCTCACTTCCGGCCGTCTCCGAAAAGCCGTCTCCATCCTCTTCTCTTCCCCATTCCCCTTCCACTTCTCTCTCTACGCCCACCTCTTCCACCTCTGCTCCTCCTCCCGCGCTGTTCTCGAGGCCCGCAAAGTCGAGTCCCATCTCGTCACCTTCTCCCCCACCCCGCCCATTTTCCTCCTCAACCGCGCCATCGAGACCTACGCCAAATGTGGGTCCTTGGGAGACGCGCGGGAGCTGTTCGACGAAATGCCCCAGAGAGACGGTGGGTCTTGGAACGCCATGATCAAGGCGTATTCCCAAAGTGGGTGCCCCGAGGATGCTCTGGTTTCGTTTTTGGATATGAATAGGGCCGGGTTTTTGCCGAATGAGATTACTTTCGCTAGTGTTCTGGGCTCGTGTGCTGCGGTTTTGGGGTTTTGGGTTACGAGGCAAGTGCATGGTATTGTTGTGAAGTATGGTTTTGGCGGGAATGTGATTTTGGGGAGTTCGCTTGTTGATATATATGGGAAGTGTGGGGTTATGAGTGATGCGAGGAGAGTGTTTGATGAGATTGAAAACCCGAATGATGTTTCTTGGAATATAATTGTGAGGAGGTATCTTGAGATGGGTGATGGAATGGAGGCGGTAATGATGTTTTTCCGGATGCTTGTGGCGGGTGTCAGGCCGTTGAAGTATACTTTTTCTAATGCTCTTGTTGCTTGTTCGAGTGCCTTTGCACTTGTGGAGGGGAAGCGGATACATGGAGTTGGGGTTAAAATGGGTTTTGAAGATGATGAGGTTGTTTTGTGCTCCCTCATCGATATGTATGTTAAATGCGGGAAGCTAGAACATGCTCATGCAATTTTCGACCAGCCCCATTCGAAAAACTTGATTTCTTGGACGTCAATTGTGTCTGGATATGCAACGAGTGGACAAACATGGAAGGCAAGGGAGTTGTTCAATGAAATGCCTGAACGGAATGTGATATCTTGGAATGCAATGTTGGGGGGATATACTCGTAACTTCCAATGGGAAGAGGCTTTGGATTATATTTTTTTGATGCGGAACACCACCAAAGATGTAGACCAGGTCACTCTTGGGTTGATCCTAAATGTATGTGCTGGCCTCTCAGATGTTGAAATGGGAAAACAGGTTCATGGATTCAGTTACCGACACGGATTTTGTTCCAATCTCTTTGTTGGCAATGGTCTTCTCTACATGTATGGTCAATGTGGTAACCTGAGAAATTCCAAAACAGTCTGGTTTCACCAGATTAGTCCATCACGGGATACAGTTTCTTGGAACAGTTTGTTGACAAACTATGCTTCACATCATATGAGTGAACTGGCAATGACAATCTTCTATGAGATGCAATGTGAGACAACACCTAACGAGATTACTTTTGCAACTCTCCTTTCAGCATGTGCAAATATTTTTGCCCTTCAGCAAGGCAAACAAATTCATGGTTTTATGATTAGAAATGGTTACATAATAGATACCGTGGTTAGAGGGACTTTGGTTGACATGTATTCCAAGTGTCAGTCTATTGAGTATGCTTTTATGGTTTTCAAAGGTGGGACTTCAAAAGATGTGATTCTTTGTAACTCCTTGATTTTGGGATGCTGTCACAATAATAGAATGAGACAGATATTTAAATTGTTTCGTTTGATGAAGGAAGAAGGAATTAAGCCAGATCATATCACATTTCGAGGCATTTTGTATGCTTGTACTTCTGAAGGTCTTGTTGAGTTGGGAAAGCAGTATTTTGAATCAATGAGCAATGATTATGGTATTATACCTCGATTAGAGCACTATGAGTGCATGATTGAACTCTACAGCCAGTGTGGGTACATGGATGAGCTTGAAACCTTTGTAAGGAATATGCCATTTGATCCCACAGTCCCAATGTTAACAAGAGTTGTGGATGCTTATCAGAGTTTTTTGACAGGGCAGACTTATTCATTAGGCCTCAAGCTTCTTCATCAGAGTTTAAGCTTCTTTATCAGGTGCAAAGCTCATCCCTTTCTTGGAGTTTCATCGGATTATATACCTGAAATTTTCTCTGGTGAAGACTTTGCTTATTGGGATGAGTTAGGCCGTCAAAATGGCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

989

Amino Acids

109.58

Weight (kDa)

7.52

Isoelectric Point (pI)

41.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-UBP	PF02148	106 - 165	2.8e-13	Zn-finger in ubiquitin-hydrolases and other protein
PPR_2	PF13041	381 - 425	7.7e-08	PPR repeat family
PPR	PF01535	582 - 612	8.2e-06	PPR repeat
PPR_2	PF13041	713 - 761	3.1e-07	PPR repeat family
PPR_2	PF13041	813 - 860	4e-12	PPR repeat family
PPR_3	PF13812	813 - 860	3.4e-06	Pentatricopeptide repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26540
fragaria_vesca	FvH4_4g16500 FvH4_4g16500 FvH4_4g16500 FvH4_4g16500
malus_domestica	MD10G1008400.v1.1
prunus_persica	Prupe.8G008000_v2.0.a1
pyrus_communis	pycom10g00510
rosa_chinensis	RchiOBHm_Chr4g0415151
rosa_laevigata	RLG00000008092
rosa_multiflora	Rmu_sc0003748.1_g000028
rosa_roxburghii	Rroxscaffold_5G00358960
rosa_rugosa	Rorug04G0132500
rosa_samantha	Rh4AG192500 Rh4BG190700 Rh4CG203400 Rh4DG190400
rosa_wichuraiana	Rw4G016370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1757
AccB1I	GGYRCC	3 cut(s)	242, 596, 1179
AccI	GTMKAC	2 cut(s)	1547, 1935
AccII	CGCG	5 cut(s)	546, 981, 1059, 1100, 1102
AccIII	TCCGGA	1 cut(s)	1512
AclWI	GGATC	4 cut(s)	524, 679, 1951, 2738
AcoI	YGGCCR	1 cut(s)	883
AcsI	RAATTY	3 cut(s)	2098, 2310, 2907
AcuI	CTGAAG	4 cut(s)	192, 858, 2279, 2607
AcyI	GRCGYC	2 cut(s)	243, 1754
AfaI	GTAC	2 cut(s)	2581, 2702
AfiI	CCNNNNNNNGG	7 cut(s)	73, 252, 436, 1083, 1176, 2727, 2879
AflIII	ACRYGT	2 cut(s)	2070, 2376
AhdI	GACNNNNNGTC	1 cut(s)	1138
AjnI	CCWGG	1 cut(s)	1938
AjuI	GAANNNNNNNTTGG	4 cut(s)	1334, 1366, 1838, 1870
AloI	GAACNNNNNNTCC	2 cut(s)	1989, 2021
Alw21I	GWGCWC	2 cut(s)	1664, 2664
Alw26I	GTCTC	7 cut(s)	893, 907, 1061, 1089, 1125, 2225, 2488
AlwI	GGATC	4 cut(s)	524, 679, 1951, 2738
Ama87I	CYCGRG	2 cut(s)	989, 1184
Aor13HI	TCCGGA	1 cut(s)	1512
AoxI	GGCC	7 cut(s)	883, 993, 1221, 1535, 1975, 2818, 2947
ApeKI	GCWGC	3 cut(s)	480, 661, 1274
ApoI	RAATTY	3 cut(s)	2098, 2310, 2907
ArsI	GACNNNNNNTTYG	2 cut(s)	2016, 2048
AspLEI	GCGC	6 cut(s)	245, 703, 860, 983, 1061, 1102
AspS9I	GGNCC	4 cut(s)	299, 994, 1086, 1221
AsuC2I	CCSGG	1 cut(s)	1225
AsuII	TTCGAA	1 cut(s)	1733
AvaI	CYCGRG	2 cut(s)	989, 1184
AvaII	GGWCC	2 cut(s)	299, 1086
BaeGI	GKGCMC	1 cut(s)	1184
BaeI	ACNNNNGTAYC	2 cut(s)	2340, 2373
BanI	GGYRCC	3 cut(s)	242, 596, 1179
BanII	GRGCYC	1 cut(s)	1268
BauI	CACGAG	1 cut(s)	1267
BbsI	GAAGAC	5 cut(s)	198, 594, 629, 2054, 2928
Bbv12I	GWGCWC	2 cut(s)	1664, 2664
BbvI	GCAGC	3 cut(s)	492, 648, 1261
BceAI	ACGGC	7 cut(s)	608, 714, 833, 870, 884, 1522, 2934
BcgI	CGANNNNNNTGC	2 cut(s)	1288, 1322
BciT130I	CCWGG	1 cut(s)	1940
BciVI	GTATCC	2 cut(s)	1602, 2134
BclI	TGATCA	1 cut(s)	1155
BcnI	CCSGG	1 cut(s)	1225
BcoDI	GTCTC	7 cut(s)	893, 907, 1061, 1089, 1125, 2225, 2488
BfaI	CTAG	4 cut(s)	27, 731, 1254, 1697
BfmI	CTRYAG	2 cut(s)	662, 2686
BfoI	RGCGCY	2 cut(s)	246, 704
BfuI	GTATCC	2 cut(s)	1602, 2134
BisI	GCNGC	3 cut(s)	481, 662, 1275
BlsI	GCNGC	3 cut(s)	482, 663, 1276
Bme1390I	CCNGG	2 cut(s)	1225, 1940
Bme18I	GGWCC	2 cut(s)	299, 1086
BmeRI	GACNNNNNGTC	1 cut(s)	1138
BmeT110I	CYCGRG	2 cut(s)	989, 1184
BmgT120I	GGNCC	4 cut(s)	299, 994, 1086, 1221
BmiI	GGNNCC	7 cut(s)	54, 244, 598, 772, 778, 1087, 1181
BmrFI	CCNGG	2 cut(s)	1225, 1940
BmsI	GCATC	7 cut(s)	1180, 1390, 1506, 1902, 2211, 2462, 2767
BoxI	GACNNNNGTC	1 cut(s)	807
BpiI	GAAGAC	5 cut(s)	198, 594, 629, 2054, 2928
Bpu14I	TTCGAA	1 cut(s)	1733
BpuEI	CTTGAG	4 cut(s)	584, 725, 1493, 2807
BpuMI	CCSGG	1 cut(s)	1225
Bsa29I	ATCGAT	1 cut(s)	1671
BsaBI	GATNNNNATC	1 cut(s)	2781
BsaHI	GRCGYC	2 cut(s)	243, 1754
BsaI	GGTCTC	1 cut(s)	1061
BsaJI	CCNNGG	3 cut(s)	1089, 1185, 2352
BsaWI	WCCGGW	1 cut(s)	1512
BsaXI	ACNNNNNCTCC	6 cut(s)	114, 144, 953, 983, 1608, 1638
Bsc4I	CCNNNNNNNGG	7 cut(s)	73, 252, 436, 1083, 1176, 2727, 2879
Bse118I	RCCGGY	1 cut(s)	773
Bse1I	ACTGG	3 cut(s)	475, 2202, 2692
Bse3DI	GCAATG	5 cut(s)	1857, 2062, 2208, 2231, 2638
Bse8I	GATNNNNATC	1 cut(s)	2781
BseAI	TCCGGA	1 cut(s)	1512
BseBI	CCWGG	1 cut(s)	1940
BseCI	ATCGAT	1 cut(s)	1671
BseDI	CCNNGG	3 cut(s)	1089, 1185, 2352
BseJI	GATNNNNATC	1 cut(s)	2781
BseLI	CCNNNNNNNGG	7 cut(s)	73, 252, 436, 1083, 1176, 2727, 2879
BseMI	GCAATG	5 cut(s)	1857, 2062, 2208, 2231, 2638
BseMII	CTCAG	3 cut(s)	404, 1995, 2084
BseNI	ACTGG	3 cut(s)	475, 2202, 2692
BseRI	GAGGAG	5 cut(s)	961, 964, 1040, 1420, 1477
BseSI	GKGCMC	1 cut(s)	1184
BseX3I	CGGCCG	1 cut(s)	883
BseXI	GCAGC	3 cut(s)	492, 648, 1261
BsgI	GTGCAG	1 cut(s)	499
Bsh1236I	CGCG	5 cut(s)	546, 981, 1059, 1100, 1102
Bsh1285I	CGRYCG	1 cut(s)	886
BshFI	GGCC	7 cut(s)	885, 995, 1223, 1537, 1977, 2820, 2949
BshNI	GGYRCC	3 cut(s)	242, 596, 1179
BshVI	ATCGAT	1 cut(s)	1671
BsiEI	CGRYCG	1 cut(s)	886
BsiHKAI	GWGCWC	2 cut(s)	1664, 2664
BsiHKCI	CYCGRG	2 cut(s)	989, 1184
BsiSI	CCGG	4 cut(s)	774, 882, 1224, 1513
BslFI	GGGAC	4 cut(s)	994, 2377, 2443, 2738
BslI	CCNNNNNNNGG	7 cut(s)	73, 252, 436, 1083, 1176, 2727, 2879
BsmAI	GTCTC	7 cut(s)	893, 907, 1061, 1089, 1125, 2225, 2488
BsmBI	CGTCTC	4 cut(s)	893, 907, 1089, 1125
BsmFI	GGGAC	4 cut(s)	994, 2377, 2443, 2738
BsmI	GAATGC	2 cut(s)	350, 1852
BsnI	GGCC	7 cut(s)	885, 995, 1223, 1537, 1977, 2820, 2949
Bso31I	GGTCTC	1 cut(s)	1061
BsoBI	CYCGRG	2 cut(s)	989, 1184
Bsp119I	TTCGAA	1 cut(s)	1733
Bsp1286I	GDGCHC	4 cut(s)	1184, 1268, 1664, 2664
Bsp13I	TCCGGA	1 cut(s)	1512
Bsp143I	GATC	7 cut(s)	529, 571, 671, 1155, 1956, 2545, 2743
Bsp68I	TCGCGA	1 cut(s)	546
BspANI	GGCC	7 cut(s)	885, 995, 1223, 1537, 1977, 2820, 2949
BspCNI	CTCAG	3 cut(s)	403, 1994, 2085
BspDI	ATCGAT	1 cut(s)	1671
BspEI	TCCGGA	1 cut(s)	1512
BspFNI	CGCG	5 cut(s)	546, 981, 1059, 1100, 1102
BspHI	TCATGA	1 cut(s)	640
BspLI	GGNNCC	7 cut(s)	54, 244, 598, 772, 778, 1087, 1181
BspMAI	CTGCAG	1 cut(s)	666
BspPI	GGATC	4 cut(s)	524, 679, 1951, 2738
BspT104I	TTCGAA	1 cut(s)	1733
BspT107I	GGYRCC	3 cut(s)	242, 596, 1179
BspTNI	GGTCTC	1 cut(s)	1061
BsrDI	GCAATG	5 cut(s)	1857, 2062, 2208, 2231, 2638
BsrFI	RCCGGY	1 cut(s)	773
BsrI	ACTGG	3 cut(s)	475, 2202, 2692
BssAI	RCCGGY	1 cut(s)	773
BssECI	CCNNGG	3 cut(s)	1089, 1185, 2352
BssMI	GATC	7 cut(s)	529, 571, 671, 1155, 1956, 2545, 2743
BssNAI	GTATAC	1 cut(s)	1548
BssNI	GRCGYC	2 cut(s)	243, 1754
BssSI	CACGAG	1 cut(s)	1267
BssT1I	CCWWGG	1 cut(s)	1089
Bst1107I	GTATAC	1 cut(s)	1548
Bst2BI	CACGAG	1 cut(s)	1267
Bst2UI	CCWGG	1 cut(s)	1940
Bst4CI	ACNGT	8 cut(s)	459, 578, 1136, 2110, 2146, 2159, 2353, 2752
Bst6I	CTCTTC	5 cut(s)	516, 917, 922, 962, 1881
BstACI	GRCGYC	2 cut(s)	243, 1754
BstBI	TTCGAA	1 cut(s)	1733
BstC8I	GCNNGC	5 cut(s)	192, 411, 775, 997, 1975
BstDEI	CTNAG	5 cut(s)	390, 611, 720, 1981, 2093
BstDSI	CCRYGG	1 cut(s)	2352
BstEII	GGTNACC	2 cut(s)	647, 2087
BstENI	CCTNNNNNAGG	1 cut(s)	2725
BstFNI	CGCG	5 cut(s)	546, 981, 1059, 1100, 1102
BstH2I	RGCGCY	2 cut(s)	246, 704
BstHHI	GCGC	6 cut(s)	245, 703, 860, 983, 1061, 1102
BstKTI	GATC	7 cut(s)	532, 574, 674, 1158, 1959, 2548, 2746
BstMAI	GTCTC	7 cut(s)	893, 907, 1061, 1089, 1125, 2225, 2488
BstMBI	GATC	7 cut(s)	529, 571, 671, 1155, 1956, 2545, 2743
BstMCI	CGRYCG	1 cut(s)	886
BstMWI	GCNNNNNNNGC	5 cut(s)	96, 415, 477, 707, 1568
BstNI	CCWGG	1 cut(s)	1940
BstNSI	RCATGY	5 cut(s)	413, 1706, 2074, 2277, 2380
BstPAI	GACNNNNGTC	1 cut(s)	807
BstPI	GGTNACC	2 cut(s)	647, 2087
BstSCI	CCNGG	2 cut(s)	1223, 1938
BstSFI	CTRYAG	2 cut(s)	662, 2686
BstSLI	GKGCMC	1 cut(s)	1184
BstUI	CGCG	5 cut(s)	546, 981, 1059, 1100, 1102
BstV1I	GCAGC	3 cut(s)	492, 648, 1261
BstV2I	GAAGAC	5 cut(s)	198, 594, 629, 2054, 2928
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
BstZ17I	GTATAC	1 cut(s)	1548
BstZI	CGGCCG	1 cut(s)	883
Bsu15I	ATCGAT	1 cut(s)	1671
BsuI	GTATCC	2 cut(s)	1602, 2134
BsuRI	GGCC	7 cut(s)	885, 995, 1223, 1537, 1977, 2820, 2949
BsuTUI	ATCGAT	1 cut(s)	1671
BtgI	CCRYGG	1 cut(s)	2352
BtgZI	GCGATG	1 cut(s)	478
BtsIMutI	CAGTG	4 cut(s)	398, 482, 754, 2699
BtuMI	TCGCGA	1 cut(s)	546
Cac8I	GCNNGC	5 cut(s)	192, 411, 775, 997, 1975
CciI	TCATGA	1 cut(s)	640
CfoI	GCGC	6 cut(s)	245, 703, 860, 983, 1061, 1102
Cfr10I	RCCGGY	1 cut(s)	773
Cfr13I	GGNCC	4 cut(s)	299, 994, 1086, 1221
ClaI	ATCGAT	1 cut(s)	1671
CseI	GACGC	1 cut(s)	1106
CsiI	ACCWGGT	1 cut(s)	1938
Csp6I	GTAC	2 cut(s)	2580, 2701
CspCI	CAANNNNNGTGG	2 cut(s)	2754, 2789
CviQI	GTAC	2 cut(s)	2580, 2701
DdeI	CTNAG	5 cut(s)	390, 611, 720, 1981, 2093
DinI	GGCGCC	1 cut(s)	244
DpnI	GATC	7 cut(s)	531, 573, 673, 1157, 1958, 2547, 2745
DpnII	GATC	7 cut(s)	529, 571, 671, 1155, 1956, 2545, 2743
DraI	TTTAAA	1 cut(s)	2506
DriI	GACNNNNNGTC	1 cut(s)	1138
EaeI	YGGCCR	1 cut(s)	883
EagI	CGGCCG	1 cut(s)	883
Eam1104I	CTCTTC	5 cut(s)	516, 917, 922, 962, 1881
Eam1105I	GACNNNNNGTC	1 cut(s)	1138
EarI	CTCTTC	5 cut(s)	516, 917, 922, 962, 1881
EclXI	CGGCCG	1 cut(s)	883
Eco130I	CCWWGG	1 cut(s)	1089
Eco147I	AGGCCT	1 cut(s)	2820
Eco24I	GRGCYC	1 cut(s)	1268
Eco31I	GGTCTC	1 cut(s)	1061
Eco32I	GATATC	1 cut(s)	1839
Eco47I	GGWCC	2 cut(s)	299, 1086
Eco52I	CGGCCG	1 cut(s)	883
Eco57I	CTGAAG	4 cut(s)	192, 858, 2279, 2607
Eco88I	CYCGRG	2 cut(s)	989, 1184
Eco91I	GGTNACC	2 cut(s)	647, 2087
EcoNI	CCTNNNNNAGG	1 cut(s)	2725
EcoO109I	RGGNCCY	2 cut(s)	299, 1086
EcoO65I	GGTNACC	2 cut(s)	647, 2087
EcoRII	CCWGG	1 cut(s)	1938
EcoRV	GATATC	1 cut(s)	1839
EcoT14I	CCWWGG	1 cut(s)	1089
EcoT38I	GRGCYC	1 cut(s)	1268
EgeI	GGCGCC	1 cut(s)	244
EheI	GGCGCC	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	1089
Esp3I	CGTCTC	4 cut(s)	893, 907, 1089, 1125
FaqI	GGGAC	4 cut(s)	994, 2377, 2443, 2738
FauI	CCCGC	7 cut(s)	986, 1004, 1044, 1095, 1331, 1519, 1682
FauNDI	CATATG	1 cut(s)	2187
FbaI	TGATCA	1 cut(s)	1155
FblI	GTMKAC	2 cut(s)	1547, 1935
Fnu4HI	GCNGC	3 cut(s)	481, 662, 1275
FriOI	GRGCYC	1 cut(s)	1268
Fsp4HI	GCNGC	3 cut(s)	481, 662, 1275
FspBI	CTAG	4 cut(s)	27, 731, 1254, 1697
GlaI	GCGC	6 cut(s)	244, 702, 859, 982, 1060, 1101
GluI	GCNGC	3 cut(s)	481, 662, 1275
HaeII	RGCGCY	2 cut(s)	246, 704
HaeIII	GGCC	7 cut(s)	885, 995, 1223, 1537, 1977, 2820, 2949
HapII	CCGG	4 cut(s)	774, 882, 1224, 1513
HgaI	GACGC	1 cut(s)	1106
HhaI	GCGC	6 cut(s)	245, 703, 860, 983, 1061, 1102
Hin1I	GRCGYC	2 cut(s)	243, 1754
Hin6I	GCGC	6 cut(s)	243, 701, 858, 981, 1059, 1100
HinP1I	GCGC	6 cut(s)	243, 701, 858, 981, 1059, 1100
HincII	GTYRAC	3 cut(s)	2166, 2374, 2763
HindII	GTYRAC	3 cut(s)	2166, 2374, 2763
HindIII	AAGCTT	3 cut(s)	147, 2825, 2845
HinfI	GANTC	7 cut(s)	62, 305, 317, 1007, 2013, 2446, 2621
HpaI	GTTAAC	1 cut(s)	2763
HpaII	CCGG	4 cut(s)	774, 882, 1224, 1513
Hpy166II	GTNNAC	7 cut(s)	1548, 1784, 1936, 2166, 2195, 2374, 2763
Hpy188I	TCNGA	8 cut(s)	61, 316, 893, 1984, 2587, 2787, 2838, 2893
Hpy188III	TCNNGA	8 cut(s)	302, 545, 641, 989, 1066, 1472, 1513, 1767
Hpy8I	GTNNAC	7 cut(s)	1548, 1784, 1936, 2166, 2195, 2374, 2763
Hpy99I	CGWCG	1 cut(s)	1118
HpyCH4III	ACNGT	8 cut(s)	459, 578, 1136, 2110, 2146, 2159, 2353, 2752
HpyCH4IV	ACGT	1 cut(s)	1754
HpyF10VI	GCNNNNNNNGC	5 cut(s)	96, 415, 477, 707, 1568
HpyF3I	CTNAG	5 cut(s)	390, 611, 720, 1981, 2093
HpySE526I	ACGT	1 cut(s)	1754
Hsp92I	GRCGYC	2 cut(s)	243, 1754
HspAI	GCGC	6 cut(s)	243, 701, 858, 981, 1059, 1100
KasI	GGCGCC	1 cut(s)	242
Kpn2I	TCCGGA	1 cut(s)	1512
KroI	GCCGGC	1 cut(s)	773
KroNI	GCCGGC	1 cut(s)	775
Ksp22I	TGATCA	1 cut(s)	1155
KspAI	GTTAAC	1 cut(s)	2763
Kzo9I	GATC	7 cut(s)	529, 571, 671, 1155, 1956, 2545, 2743
LmnI	GCTCC	5 cut(s)	770, 782, 974, 1105, 1667
Lsp1109I	GCAGC	3 cut(s)	492, 648, 1261
LweI	GCATC	7 cut(s)	1180, 1390, 1506, 1902, 2211, 2462, 2767
MabI	ACCWGGT	1 cut(s)	1938
MaeI	CTAG	4 cut(s)	27, 731, 1254, 1697
MaeII	ACGT	1 cut(s)	1754
MalI	GATC	7 cut(s)	531, 573, 673, 1157, 1958, 2547, 2745
MboI	GATC	7 cut(s)	529, 571, 671, 1155, 1956, 2545, 2743
MfeI	CAATTG	1 cut(s)	1758
MflI	RGATCY	1 cut(s)	529
MhlI	GDGCHC	4 cut(s)	1184, 1268, 1664, 2664
Mly113I	GGCGCC	1 cut(s)	243
MlyI	GAGTC	2 cut(s)	326, 1016
MmeI	TCCRAC	1 cut(s)	352
MroI	TCCGGA	1 cut(s)	1512
MroNI	GCCGGC	1 cut(s)	773
MseI	TTAA	8 cut(s)	15, 761, 1626, 1683, 2505, 2538, 2762, 2843
MslI	CAYNNNNRTG	4 cut(s)	579, 1673, 1707, 2190
MspI	CCGG	4 cut(s)	774, 882, 1224, 1513
MspR9I	CCNGG	2 cut(s)	1225, 1940
MunI	CAATTG	1 cut(s)	1758
Mva1269I	GAATGC	2 cut(s)	350, 1852
MvaI	CCWGG	1 cut(s)	1940
MvnI	CGCG	5 cut(s)	546, 981, 1059, 1100, 1102
MwoI	GCNNNNNNNGC	5 cut(s)	96, 415, 477, 707, 1568
NaeI	GCCGGC	1 cut(s)	775
NarI	GGCGCC	1 cut(s)	243
NciI	CCSGG	1 cut(s)	1225
NdeI	CATATG	1 cut(s)	2187
NdeII	GATC	7 cut(s)	529, 571, 671, 1155, 1956, 2545, 2743
NgoMIV	GCCGGC	1 cut(s)	773
NlaIV	GGNNCC	7 cut(s)	54, 244, 598, 772, 778, 1087, 1181
NmuCI	GTSAC	4 cut(s)	425, 1018, 1942, 2477
NruI	TCGCGA	1 cut(s)	546
NspI	RCATGY	5 cut(s)	413, 1706, 2074, 2277, 2380
NspV	TTCGAA	1 cut(s)	1733
PaeI	GCATGC	1 cut(s)	413
PaeR7I	CTCGAG	1 cut(s)	989
PagI	TCATGA	1 cut(s)	640
PceI	AGGCCT	1 cut(s)	2820
PciI	ACATGT	2 cut(s)	2070, 2376
PctI	GAATGC	2 cut(s)	350, 1852
PdiI	GCCGGC	1 cut(s)	775
PfeI	GAWTC	5 cut(s)	62, 305, 2013, 2446, 2621
PflFI	GACNNNGTC	1 cut(s)	1940
PkrI	GCNGC	3 cut(s)	482, 663, 1276
PleI	GAGTC	2 cut(s)	325, 1015
PluTI	GGCGCC	1 cut(s)	246
PpsI	GAGTC	2 cut(s)	325, 1015
PpuMI	RGGWCCY	2 cut(s)	299, 1086
PscI	ACATGT	2 cut(s)	2070, 2376
PshAI	GACNNNNGTC	1 cut(s)	807
Psp5II	RGGWCCY	2 cut(s)	299, 1086
Psp6I	CCWGG	1 cut(s)	1938
PspEI	GGTNACC	2 cut(s)	647, 2087
PspGI	CCWGG	1 cut(s)	1938
PspN4I	GGNNCC	7 cut(s)	54, 244, 598, 772, 778, 1087, 1181
PspPI	GGNCC	4 cut(s)	299, 994, 1086, 1221
PspPPI	RGGWCCY	2 cut(s)	299, 1086
PstI	CTGCAG	1 cut(s)	666
PsuI	RGATCY	1 cut(s)	529
PsyI	GACNNNGTC	1 cut(s)	1940
RruI	TCGCGA	1 cut(s)	546
RsaI	GTAC	2 cut(s)	2581, 2702
RsaNI	GTAC	2 cut(s)	2580, 2701
RseI	CAYNNNNRTG	4 cut(s)	579, 1673, 1707, 2190
SaqAI	TTAA	8 cut(s)	15, 761, 1626, 1683, 2505, 2538, 2762, 2843
SatI	GCNGC	3 cut(s)	481, 662, 1275
Sau3AI	GATC	7 cut(s)	529, 571, 671, 1155, 1956, 2545, 2743
Sau96I	GGNCC	4 cut(s)	299, 994, 1086, 1221
SchI	GAGTC	2 cut(s)	326, 1016
ScrFI	CCNGG	2 cut(s)	1225, 1940
SduI	GDGCHC	4 cut(s)	1184, 1268, 1664, 2664
SexAI	ACCWGGT	1 cut(s)	1938
SfaNI	GCATC	7 cut(s)	1180, 1390, 1506, 1902, 2211, 2462, 2767
SfcI	CTRYAG	2 cut(s)	662, 2686
SfoI	GGCGCC	1 cut(s)	244
Sfr274I	CTCGAG	1 cut(s)	989
SfuI	TTCGAA	1 cut(s)	1733
SinI	GGWCC	2 cut(s)	299, 1086
SlaI	CTCGAG	1 cut(s)	989
SmiI	ATTTAAAT	1 cut(s)	2506
SmiMI	CAYNNNNRTG	4 cut(s)	579, 1673, 1707, 2190
SmlI	CTYRAG	5 cut(s)	563, 704, 989, 1472, 2822
SmoI	CTYRAG	5 cut(s)	563, 704, 989, 1472, 2822
SphI	GCATGC	1 cut(s)	413
SseBI	AGGCCT	1 cut(s)	2820
SspDI	GGCGCC	1 cut(s)	242
SspI	AATATT	1 cut(s)	2284
SspMI	CTAG	4 cut(s)	27, 731, 1254, 1697
StuI	AGGCCT	1 cut(s)	2820
StyD4I	CCNGG	2 cut(s)	1223, 1938
StyI	CCWWGG	1 cut(s)	1089
SwaI	ATTTAAAT	1 cut(s)	2506
TaaI	ACNGT	8 cut(s)	459, 578, 1136, 2110, 2146, 2159, 2353, 2752
TaiI	ACGT	1 cut(s)	1757
TatI	WGTACW	1 cut(s)	2579
TfiI	GAWTC	5 cut(s)	62, 305, 2013, 2446, 2621
Tru1I	TTAA	8 cut(s)	15, 761, 1626, 1683, 2505, 2538, 2762, 2843
Tru9I	TTAA	8 cut(s)	15, 761, 1626, 1683, 2505, 2538, 2762, 2843
TscAI	CASTG	4 cut(s)	398, 482, 754, 2699
TseFI	GTSAC	4 cut(s)	425, 1018, 1942, 2477
TseI	GCWGC	3 cut(s)	480, 661, 1274
Tsp45I	GTSAC	4 cut(s)	425, 1018, 1942, 2477
TspGWI	ACGGA	3 cut(s)	769, 1843, 2043
TspRI	CASTG	4 cut(s)	398, 482, 754, 2699
Tth111I	GACNNNGTC	1 cut(s)	1940
VpaK11BI	GGWCC	2 cut(s)	299, 1086
XagI	CCTNNNNNAGG	1 cut(s)	2725
XapI	RAATTY	3 cut(s)	2098, 2310, 2907
XceI	RCATGY	5 cut(s)	413, 1706, 2074, 2277, 2380
XcmI	CCANNNNNNNNNTGG	3 cut(s)	462, 1133, 1946
XhoI	CTCGAG	1 cut(s)	989
XmiI	GTMKAC	2 cut(s)	1547, 1935
XspI	CTAG	4 cut(s)	27, 731, 1254, 1697
ZraI	GACGTC	1 cut(s)	1755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.