Rh4BG190700

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
33053999 .. 33055720
1722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG190700.1

Sequence Viewer

Length: 1722 bp
ATGCCCCAGAGAGACGGTGGGTCTTGGAACGCCATGATCAAGGCGTATTCCCAAAGTGGGCGTCCCGAGGATGCTCTGGTTTCGTTTTTGGATATGAATAGAGCCGGGTTTTTGCCGAATGAGATTACTTTCGCTGGTGTTCTCGGCTCGTGTGCTGCTGTTTTGGAGTTTTGGGCTTCGAGGCAAGTTCATGGTCTTGTTGTGAAGTATGGTTTTGGCGGGAATGTGATTTTGGGGAGTTCGCTTGTTGATGTATATGGGAAGTGTGGGGTTATGAGTGATGCGAGGAGAGTGTTTGATGAGATGGAAAACCCGAATGATGTTTCTTGGAATATAATCGTGAGGAGGTATCTTGAGATGGGTGATGGAATGGAGGCGGTAATGATGTTTTTCCGGATGCTTGTGGCGGGTGTCAGGCCGTTGAAGTATACTTTTTCTAATGCTCTTGTTGCTTGTTCGAGTGCCTTTGCACTTGTGGAGGGGAAGCGGATACATGGAGTTGGGGTTAAAATGGGTTTTGAAGATGATGAGGTTGTTTTGTGCTCCCTCATCGATATGTATGTTAAATGCGGGAAGCTAGAACATGCTCATGCAATTTTTGACCAGCCCCATTCGAAAAACTTGATTTCTTGGACGTCAATTGTGTCTGGATATGCAATGAGTGGACAAACATGGAAGGCAAGGGAGTTGTTCAATGAAATGCCTGAACGGAATGTGATATCTTGGAATGCAATGCTGGCAGGGTATACTCGTTACTTCCAATGGGAAGAGGCGTTGGATTTTATATTTTTGATGCGGAACACCACCAAAGATATAGACCAGGTCACTCTTGGGTTGATCCTAAATGTATGTGCTGGCCTCTCAGATGTTGAAATGGGAAAACAGGTTCATGGATTCATTTACCGACATGGATTTTGTTCCAATCTCTTTGTTGGCAATGGTCTTCTCTACATGTATGGTCAATGTGGTAACTTGAGAAATTCCAAAACAGTCTGGTTTCACCAGATTAGTCCATCACGGGATACAGTTTCTTGGAATAGTTTGTTGACAAACTATGCTTCACATCGTCTGAGTGAACTGGCAATGACAATCTTCTATGAGATGCAATGTGAGACAGCACCTAACGAGATTACATTTGCAACTCTCCTTTCAGCATGTGCAAATATTTTTGCTCTTCAGCAAGGCAAACAAATTCATGGTTTTATGATTAGAAATGGTTACATAATAGATACCGTGGTTAGAGGGGCTTTGGTTGACATGTATTCCAAGTGTCATTCTATTGAGTATGCTTTTATGGTTTTCAAAGGTGGGACTTCAAAAGATGTGATTCTTTGTAACTCCTTGATTTTGGGATGCTGTCACAATAATAGAATGAGACAGATATTTAAATTGTTTCGTTTGATGAAGGAAGAAGGAATTAAGCCAGATCATATCACATTTCGAGGCATTTTGTATGCTTGTACTTGTGAAGGTCTTGTTGAGTTGGGAAAGCAGTATTTTGAATCAATGAGCAATGATTATGGTATTATACCTCGATTAGAGCACTATGAGTGCATGATTGAACTCTACAGCCAGTGTGGGTACATGGATGAGCTTGAAACCTTTGTAAGGAATATGCCATTTGATCCCACAGTCCCAATGTTAACAAGAGTTGTGGATGCTTGTAAAAGACATGGATGCCTGAGATTTGGACAATGGGCTGTTCAACGACTTAATAACTAA

Protein Analysis

573

Amino Acids

64.87

Weight (kDa)

6.44

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 8 - 52 1.6e-08 PPR repeat family
PPR PF01535 8 - 37 9.5e-06 PPR repeat
PPR PF01535 209 - 239 1.3e-06 PPR repeat
PPR_2 PF13041 340 - 388 2.7e-07 PPR repeat family
PPR_2 PF13041 440 - 487 2.2e-12 PPR repeat family
PPR_3 PF13812 440 - 487 2.4e-06 Pentatricopeptide repeat domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0013521)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26540
fragaria_vesca FvH4_4g16500 FvH4_4g16500 FvH4_4g16500 FvH4_4g16500
malus_domestica MD10G1008400.v1.1
prunus_persica Prupe.8G008000_v2.0.a1
pyrus_communis pycom10g00510
rosa_chinensis RchiOBHm_Chr4g0415151
rosa_laevigata RLG00000008092
rosa_multiflora Rmu_sc0003748.1_g000028
rosa_roxburghii Rroxscaffold_5G00358960
rosa_rugosa Rorug04G0132500
rosa_samantha Rh4AG192500 Rh4BG190700 Rh4CG203400 Rh4DG190400
rosa_wichuraiana Rw4G016370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 638
AccI GTMKAC 2 cut(s) 428, 746
AccIII TCCGGA 1 cut(s) 393
AciI CCGC 6 cut(s) 219, 377, 407, 487, 570, 796
AclWI GGATC 2 cut(s) 832, 1619
AcsI RAATTY 2 cut(s) 979, 1191
AcuI CTGAAG 1 cut(s) 1160
AcyI GRCGYC 2 cut(s) 61, 635
AfaI GTAC 2 cut(s) 1462, 1583
AfiI CCNNNNNNNGG 2 cut(s) 57, 1608
AflIII ACRYGT 2 cut(s) 951, 1257
AhdI GACNNNNNGTC 1 cut(s) 19
AjnI CCWGG 1 cut(s) 819
AjuI GAANNNNNNNTTGG 2 cut(s) 215, 247
AloI GAACNNNNNNTCC 2 cut(s) 870, 902
AluBI AGCT 2 cut(s) 577, 1594
AluI AGCT 2 cut(s) 577, 1594
Alw21I GWGCWC 2 cut(s) 545, 1545
Alw26I GTCTC 3 cut(s) 6, 1106, 1369
AlwI GGATC 2 cut(s) 832, 1619
Ama87I CYCGRG 1 cut(s) 65
Aor13HI TCCGGA 1 cut(s) 393
AoxI GGCC 2 cut(s) 416, 856
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 2 cut(s) 979, 1191
ArsI GACNNNNNNTTYG 4 cut(s) 46, 78, 897, 929
AsuC2I CCSGG 1 cut(s) 106
AsuHPI GGTGA 2 cut(s) 374, 992
AsuII TTCGAA 1 cut(s) 614
AvaI CYCGRG 1 cut(s) 65
BaeI ACNNNNGTAYC 2 cut(s) 1221, 1254
BauI CACGAG 1 cut(s) 148
BbsI GAAGAC 1 cut(s) 935
Bbv12I GWGCWC 2 cut(s) 545, 1545
BbvI GCAGC 1 cut(s) 142
BccI CCATC 4 cut(s) 298, 352, 359, 1021
BceAI ACGGC 1 cut(s) 403
BciT130I CCWGG 1 cut(s) 821
BciVI GTATCC 2 cut(s) 483, 1015
BclI TGATCA 1 cut(s) 36
BcnI CCSGG 1 cut(s) 106
BcoDI GTCTC 3 cut(s) 6, 1106, 1369
BfaI CTAG 1 cut(s) 578
BfmI CTRYAG 1 cut(s) 1567
BfuI GTATCC 2 cut(s) 483, 1015
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
Bme1390I CCNGG 2 cut(s) 106, 821
BmeRI GACNNNNNGTC 1 cut(s) 19
BmeT110I CYCGRG 1 cut(s) 65
BmrFI CCNGG 2 cut(s) 106, 821
BmsI GCATC 8 cut(s) 61, 271, 387, 783, 1092, 1343, 1648, 1667
BpiI GAAGAC 1 cut(s) 935
Bpu14I TTCGAA 1 cut(s) 614
BpuEI CTTGAG 2 cut(s) 374, 994
BpuMI CCSGG 1 cut(s) 106
Bsa29I ATCGAT 1 cut(s) 552
BsaHI GRCGYC 2 cut(s) 61, 635
BsaJI CCNNGG 2 cut(s) 66, 1233
BsaWI WCCGGW 1 cut(s) 393
BsaXI ACNNNNNCTCC 2 cut(s) 489, 519
Bsc4I CCNNNNNNNGG 2 cut(s) 57, 1608
Bse1I ACTGG 2 cut(s) 1083, 1573
Bse3DI GCAATG 6 cut(s) 663, 738, 943, 1089, 1112, 1519
BseAI TCCGGA 1 cut(s) 393
BseBI CCWGG 1 cut(s) 821
BseCI ATCGAT 1 cut(s) 552
BseDI CCNNGG 2 cut(s) 66, 1233
BseGI GGATG 6 cut(s) 76, 402, 1358, 1594, 1663, 1682
BseLI CCNNNNNNNGG 2 cut(s) 57, 1608
BseMI GCAATG 6 cut(s) 663, 738, 943, 1089, 1112, 1519
BseMII CTCAG 3 cut(s) 876, 1061, 1673
BseNI ACTGG 2 cut(s) 1083, 1573
BseRI GAGGAG 2 cut(s) 301, 358
BseXI GCAGC 1 cut(s) 142
BshFI GGCC 2 cut(s) 418, 858
BshVI ATCGAT 1 cut(s) 552
BsiHKAI GWGCWC 2 cut(s) 545, 1545
BsiHKCI CYCGRG 1 cut(s) 65
BsiSI CCGG 2 cut(s) 105, 394
BslFI GGGAC 3 cut(s) 48, 1324, 1619
BslI CCNNNNNNNGG 2 cut(s) 57, 1608
BsmAI GTCTC 3 cut(s) 6, 1106, 1369
BsmBI CGTCTC 1 cut(s) 6
BsmFI GGGAC 3 cut(s) 48, 1324, 1619
BsmI GAATGC 1 cut(s) 733
BsnI GGCC 2 cut(s) 418, 858
BsoBI CYCGRG 1 cut(s) 65
Bsp119I TTCGAA 1 cut(s) 614
Bsp1286I GDGCHC 2 cut(s) 545, 1545
Bsp13I TCCGGA 1 cut(s) 393
Bsp143I GATC 4 cut(s) 36, 837, 1426, 1624
BspACI CCGC 6 cut(s) 219, 377, 407, 487, 570, 796
BspANI GGCC 2 cut(s) 418, 858
BspCNI CTCAG 3 cut(s) 875, 1062, 1674
BspDI ATCGAT 1 cut(s) 552
BspEI TCCGGA 1 cut(s) 393
BspPI GGATC 2 cut(s) 832, 1619
BspQI GCTCTTC 1 cut(s) 1179
BspT104I TTCGAA 1 cut(s) 614
BsrDI GCAATG 6 cut(s) 663, 738, 943, 1089, 1112, 1519
BsrI ACTGG 2 cut(s) 1083, 1573
BssECI CCNNGG 2 cut(s) 66, 1233
BssMI GATC 4 cut(s) 36, 837, 1426, 1624
BssNAI GTATAC 2 cut(s) 429, 747
BssNI GRCGYC 2 cut(s) 61, 635
BssSI CACGAG 1 cut(s) 148
Bst1107I GTATAC 2 cut(s) 429, 747
Bst2BI CACGAG 1 cut(s) 148
Bst2UI CCWGG 1 cut(s) 821
Bst4CI ACNGT 5 cut(s) 17, 991, 1027, 1234, 1633
Bst6I CTCTTC 2 cut(s) 762, 1179
BstACI GRCGYC 2 cut(s) 61, 635
BstBI TTCGAA 1 cut(s) 614
BstC8I GCNNGC 2 cut(s) 738, 856
BstDEI CTNAG 3 cut(s) 862, 1070, 1682
BstDSI CCRYGG 1 cut(s) 1233
BstENI CCTNNNNNAGG 1 cut(s) 1606
BstF5I GGATG 6 cut(s) 76, 402, 1358, 1594, 1663, 1682
BstKTI GATC 4 cut(s) 39, 840, 1429, 1627
BstMAI GTCTC 3 cut(s) 6, 1106, 1369
BstMBI GATC 4 cut(s) 36, 837, 1426, 1624
BstMWI GCNNNNNNNGC 2 cut(s) 449, 737
BstNI CCWGG 1 cut(s) 821
BstNSI RCATGY 4 cut(s) 587, 955, 1158, 1261
BstSCI CCNGG 2 cut(s) 104, 819
BstSFI CTRYAG 1 cut(s) 1567
BstV1I GCAGC 1 cut(s) 142
BstV2I GAAGAC 1 cut(s) 935
BstZ17I GTATAC 2 cut(s) 429, 747
Bsu15I ATCGAT 1 cut(s) 552
BsuI GTATCC 2 cut(s) 483, 1015
BsuRI GGCC 2 cut(s) 418, 858
BsuTUI ATCGAT 1 cut(s) 552
BtgI CCRYGG 1 cut(s) 1233
BtsCI GGATG 6 cut(s) 76, 402, 1358, 1594, 1663, 1682
BtsIMutI CAGTG 1 cut(s) 1580
Cac8I GCNNGC 2 cut(s) 738, 856
ClaI ATCGAT 1 cut(s) 552
CseI GACGC 1 cut(s) 50
CsiI ACCWGGT 1 cut(s) 819
Csp6I GTAC 2 cut(s) 1461, 1582
CspCI CAANNNNNGTGG 2 cut(s) 1635, 1670
CviQI GTAC 2 cut(s) 1461, 1582
DdeI CTNAG 3 cut(s) 862, 1070, 1682
DpnI GATC 4 cut(s) 38, 839, 1428, 1626
DpnII GATC 4 cut(s) 36, 837, 1426, 1624
DraI TTTAAA 1 cut(s) 1387
DriI GACNNNNNGTC 1 cut(s) 19
Eam1104I CTCTTC 2 cut(s) 762, 1179
Eam1105I GACNNNNNGTC 1 cut(s) 19
EarI CTCTTC 2 cut(s) 762, 1179
Eco32I GATATC 1 cut(s) 720
Eco57I CTGAAG 1 cut(s) 1160
Eco88I CYCGRG 1 cut(s) 65
EcoNI CCTNNNNNAGG 1 cut(s) 1606
EcoRII CCWGG 1 cut(s) 819
EcoRV GATATC 1 cut(s) 720
Esp3I CGTCTC 1 cut(s) 6
FaqI GGGAC 3 cut(s) 48, 1324, 1619
FauI CCCGC 3 cut(s) 212, 400, 563
FbaI TGATCA 1 cut(s) 36
FblI GTMKAC 2 cut(s) 428, 746
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 6 cut(s) 83, 409, 1365, 1601, 1670, 1689
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 1 cut(s) 578
GluI GCNGC 1 cut(s) 156
HaeIII GGCC 2 cut(s) 418, 858
HapII CCGG 2 cut(s) 105, 394
HgaI GACGC 1 cut(s) 50
Hin1I GRCGYC 2 cut(s) 61, 635
HincII GTYRAC 3 cut(s) 1047, 1255, 1644
HindII GTYRAC 3 cut(s) 1047, 1255, 1644
HinfI GANTC 3 cut(s) 894, 1327, 1502
HpaI GTTAAC 1 cut(s) 1644
HpaII CCGG 2 cut(s) 105, 394
HphI GGTGA 2 cut(s) 374, 992
Hpy166II GTNNAC 7 cut(s) 429, 665, 747, 1047, 1076, 1255, 1644
Hpy188I TCNGA 2 cut(s) 865, 1071
Hpy188III TCNNGA 5 cut(s) 65, 340, 353, 394, 648
Hpy8I GTNNAC 7 cut(s) 429, 665, 747, 1047, 1076, 1255, 1644
HpyAV CCTTC 4 cut(s) 670, 1399, 1406, 1463
HpyCH4III ACNGT 5 cut(s) 17, 991, 1027, 1234, 1633
HpyCH4IV ACGT 1 cut(s) 635
HpyCH4V TGCA 8 cut(s) 470, 593, 656, 731, 1105, 1139, 1160, 1554
HpyF10VI GCNNNNNNNGC 2 cut(s) 449, 737
HpyF3I CTNAG 3 cut(s) 862, 1070, 1682
HpySE526I ACGT 1 cut(s) 635
Hsp92I GRCGYC 2 cut(s) 61, 635
Kpn2I TCCGGA 1 cut(s) 393
Ksp22I TGATCA 1 cut(s) 36
KspAI GTTAAC 1 cut(s) 1644
Kzo9I GATC 4 cut(s) 36, 837, 1426, 1624
LguI GCTCTTC 1 cut(s) 1179
LmnI GCTCC 1 cut(s) 548
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 8 cut(s) 61, 271, 387, 783, 1092, 1343, 1648, 1667
MabI ACCWGGT 1 cut(s) 819
MaeI CTAG 1 cut(s) 578
MaeII ACGT 1 cut(s) 635
MaeIII GTNAC 6 cut(s) 752, 823, 968, 1217, 1334, 1358
MalI GATC 4 cut(s) 38, 839, 1428, 1626
MboI GATC 4 cut(s) 36, 837, 1426, 1624
MboII GAAGA 6 cut(s) 533, 779, 935, 1084, 1166, 1421
MfeI CAATTG 1 cut(s) 639
MhlI GDGCHC 2 cut(s) 545, 1545
MluCI AATT 6 cut(s) 594, 639, 979, 1191, 1388, 1416
MmeI TCCRAC 1 cut(s) 756
MroI TCCGGA 1 cut(s) 393
MseI TTAA 6 cut(s) 507, 564, 1386, 1419, 1643, 1713
MslI CAYNNNNRTG 2 cut(s) 554, 588
MspI CCGG 2 cut(s) 105, 394
MspR9I CCNGG 2 cut(s) 106, 821
MunI CAATTG 1 cut(s) 639
Mva1269I GAATGC 1 cut(s) 733
MvaI CCWGG 1 cut(s) 821
MwoI GCNNNNNNNGC 2 cut(s) 449, 737
NciI CCSGG 1 cut(s) 106
NdeII GATC 4 cut(s) 36, 837, 1426, 1624
NmeAIII GCCGAG 1 cut(s) 123
NmuCI GTSAC 2 cut(s) 823, 1358
NspI RCATGY 4 cut(s) 587, 955, 1158, 1261
NspV TTCGAA 1 cut(s) 614
PciI ACATGT 2 cut(s) 951, 1257
PciSI GCTCTTC 1 cut(s) 1179
PctI GAATGC 1 cut(s) 733
PfeI GAWTC 3 cut(s) 894, 1327, 1502
PflFI GACNNNGTC 1 cut(s) 821
PkrI GCNGC 1 cut(s) 157
PscI ACATGT 2 cut(s) 951, 1257
Psp6I CCWGG 1 cut(s) 819
PspGI CCWGG 1 cut(s) 819
PsyI GACNNNGTC 1 cut(s) 821
RsaI GTAC 2 cut(s) 1462, 1583
RsaNI GTAC 2 cut(s) 1461, 1582
RseI CAYNNNNRTG 2 cut(s) 554, 588
SapI GCTCTTC 1 cut(s) 1179
SaqAI TTAA 6 cut(s) 507, 564, 1386, 1419, 1643, 1713
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 4 cut(s) 36, 837, 1426, 1624
ScrFI CCNGG 2 cut(s) 106, 821
SduI GDGCHC 2 cut(s) 545, 1545
SexAI ACCWGGT 1 cut(s) 819
SfaNI GCATC 8 cut(s) 61, 271, 387, 783, 1092, 1343, 1648, 1667
SfcI CTRYAG 1 cut(s) 1567
SfuI TTCGAA 1 cut(s) 614
SmiI ATTTAAAT 1 cut(s) 1387
SmiMI CAYNNNNRTG 2 cut(s) 554, 588
SmlI CTYRAG 2 cut(s) 353, 973
SmoI CTYRAG 2 cut(s) 353, 973
Sse9I AATT 6 cut(s) 594, 639, 979, 1191, 1388, 1416
SsiI CCGC 6 cut(s) 219, 377, 407, 487, 570, 796
SspI AATATT 1 cut(s) 1165
SspMI CTAG 1 cut(s) 578
StyD4I CCNGG 2 cut(s) 104, 819
SwaI ATTTAAAT 1 cut(s) 1387
TaaI ACNGT 5 cut(s) 17, 991, 1027, 1234, 1633
TaiI ACGT 1 cut(s) 638
TaqI TCGA 6 cut(s) 179, 458, 552, 614, 1441, 1534
TasI AATT 6 cut(s) 594, 639, 979, 1191, 1388, 1416
TatI WGTACW 1 cut(s) 1460
TfiI GAWTC 3 cut(s) 894, 1327, 1502
Tru1I TTAA 6 cut(s) 507, 564, 1386, 1419, 1643, 1713
Tru9I TTAA 6 cut(s) 507, 564, 1386, 1419, 1643, 1713
TscAI CASTG 1 cut(s) 1580
TseFI GTSAC 2 cut(s) 823, 1358
TseI GCWGC 1 cut(s) 155
Tsp45I GTSAC 2 cut(s) 823, 1358
TspDTI ATGAA 7 cut(s) 110, 179, 711, 878, 886, 1184, 1418
TspGWI ACGGA 1 cut(s) 724
TspRI CASTG 1 cut(s) 1580
Tth111I GACNNNGTC 1 cut(s) 821
XagI CCTNNNNNAGG 1 cut(s) 1606
XapI RAATTY 2 cut(s) 979, 1191
XceI RCATGY 4 cut(s) 587, 955, 1158, 1261
XcmI CCANNNNNNNNNTGG 2 cut(s) 14, 827
XmiI GTMKAC 2 cut(s) 428, 746
XspI CTAG 1 cut(s) 578
ZraI GACGTC 1 cut(s) 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.