Rroxscaffold_5G00358960

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0013521
Physical Location & Seq
Forward (+)
39045050 .. 39047133
2084 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00358960.1

Sequence Viewer

Length: 2028 bp
ATGGGTGTCAAAGCCGGCTCCGTGATAAACCGACTTCTCTACGACAAAGGTCATCTAACCAAACCTTCCCACCCAACTGAAGCCAAAGCCGTAACCAACACAATCCTCACTCACCTCACTTCCGGCCGTCTCCGAAAAGCCGTCTCCATCCTCTTCTCTTCCCCATTCCCCTTCCACTTCTCCCTCTACGCCCATCTCTTCCACCTCTGCTCCTCCTCCCGCGCTGTTCTCGAGGCCCGCAAAGTCGAGTCCCATCTCGTCTCCTTCTCCCCCACCCCGCCCATATTCCTCCTCAACCGCGCCATCGAGACCTACGCCAAATGTGGGTCCTTGGGAGATGCGCGGGAGCTGTTCGACGAAATGCCCCAGAGAGACGGTGGGTCTTGGAACGCCATGATCAAGGCGTATTCCCAAGGTGGGTGTCCCGAGGATGCCCTGGTTTCGTTTTTGGATATGAATAGAGCCGGGTTTTTGCCGAATGAGATTACTTTCGCTAGTGTTCTTGGCTCGTGTGCTGCGGTTTTGGAGTTTTGGGTTTCGAGGCAAGTGCATGGTCTTGTTGTGAAGTATGGTTTTGGCGGGAATGTGATTTTGGGGAGTTCGCTTGTTGATATATATGGGAAGTGTGGGGTTATGAGTGATGCGAGGAGAGTGTTTGATGAGATGGAAAACCCGAATGATGTTTCTTGGAATATAATTGTGAGGAGGTATCTTGAGATGGGTGATGGAATGGAGGCGGTAATGATGTTTTTCCGGATGCTTGTGGCGGGTGTCAGGCCGTTGAATGCCTTTGCACTTGTGGAGGGGAAGCGGATACATGGAGTTGGGGTTAAAATGGGTTTTGAAGATGATGAGGTTGTTTTGTGCTCCCTCATCGATATGTATGTTAAATGCGGGAAGCTAGAACATGCTCATGCAATTTTTGACCAGCCCCATTCAAAAAACTTGATTTCTTGGACGTCAATTGTGTCTGGATATGCAATGAGTGGACATACATGGAAGGCAAGGGAGTTGTTCAATGAAATGCCTGAACGGAATGTGATATCTTGGAATGCAATGTTGGCAGGGTATACTCGTTACTTCCAATGGGAAGAGGCGTTGGATTTTATATTTTTTGATGCGGAACACCACCAAAGATATAGACCAGGTCACTCTTGGGTTGATCCTAAATATGTTGAAATGGGAAAACAGGTTCATGGATTCATTTACCGACATGGATTTTGTTCCAATCTCTTTGTTGGCAATGGTCTTCTCTACATGTATGGTCGATGCGGTAACTTGAGAAATTCCAAAACAGTCTGGTTTCACCAGATTAGTCCATCACGGGATACAGTTTCTTGGAATAGTTTGTTGACAAACTATGCTTCACATCATCTGAGTGAACTGGCAATGACAATCTTCTATGAGATGCAATGTGACACAGCACCTAACGAGATTACATTTGCAACTCTCCTTTCAGCATGTGCAAATATTTTTGCTCTTCAGCAAGGCAAACAAATTCATGCTTTTATGATTAGAAATGGTTACATAATAGATACCGTGGTTAGAGGGGCTTTGGTTGACATGTATTCCAAGTGTCATTCTATTGAGTATGCTTTTATGGTTTTCAAAGGTGGGACTTCAAAAGATGTGATTCTTTGTAACTCCTTGATTTTGGGATGCTGTCACAATAATAGAATGAGACGGATATTTAAATTGTTTCGTTTGATGAAGGAAGAAGGAATTCAGCCAGATCATATCACATTTCGAGGTATTTTGTATGCTTGTACTACTGAAGGTCTTGTTGAGTTGGGAAAGCAGTATTTTGAATCAATGAGCAATGATTATGGTATTATACCTCGATTAGAGCACTATGAGCGCATGATTGAACTCTACAGCCTGTGTGGGTACATGGATGAGCTTGAAACCTTTGTAAGGAATATGCCATTTGATCCCACAGTCCCAATGTTAACAAGAGTTGTGGAAGCTTGTAAAAGACATGGATGCCTGAGATTTGGACAATGGGCTGCTCAACGACTTAATAACTAA

Protein Analysis

675

Amino Acids

76.64

Weight (kDa)

7.58

Isoelectric Point (pI)

42.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 128 - 172 2.7e-07 PPR repeat family
PPR PF01535 317 - 347 3.3e-06 PPR repeat
PPR_2 PF13041 442 - 490 7.4e-07 PPR repeat family
PPR_2 PF13041 542 - 589 8.2e-12 PPR repeat family
PPR_3 PF13812 542 - 589 2.6e-06 Pentatricopeptide repeat domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013521)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26540
fragaria_vesca FvH4_4g16500 FvH4_4g16500 FvH4_4g16500 FvH4_4g16500
malus_domestica MD10G1008400.v1.1
prunus_persica Prupe.8G008000_v2.0.a1
pyrus_communis pycom10g00510
rosa_chinensis RchiOBHm_Chr4g0415151
rosa_laevigata RLG00000008092
rosa_multiflora Rmu_sc0003748.1_g000028
rosa_roxburghii Rroxscaffold_5G00358960
rosa_rugosa Rorug04G0132500
rosa_samantha Rh4AG192500 Rh4BG190700 Rh4CG203400 Rh4DG190400
rosa_wichuraiana Rw4G016370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 962
AccI GTMKAC 1 cut(s) 1070
AccII CGCG 3 cut(s) 222, 300, 343
AccIII TCCGGA 1 cut(s) 753
AclWI GGATC 2 cut(s) 1157, 1925
AcoI YGGCCR 1 cut(s) 124
AcsI RAATTY 3 cut(s) 1285, 1497, 1722
AcuI CTGAAG 3 cut(s) 99, 1466, 1794
AcyI GRCGYC 1 cut(s) 959
AfaI GTAC 2 cut(s) 1768, 1889
AfiI CCNNNNNNNGG 3 cut(s) 324, 417, 1914
AflIII ACRYGT 2 cut(s) 1257, 1563
AhdI GACNNNNNGTC 1 cut(s) 379
AjnI CCWGG 2 cut(s) 435, 1144
AjuI GAANNNNNNNTTGG 4 cut(s) 575, 607, 1043, 1075
AloI GAACNNNNNNTCC 2 cut(s) 1176, 1208
AluBI AGCT 4 cut(s) 349, 901, 1900, 1967
AluI AGCT 4 cut(s) 349, 901, 1900, 1967
Alw21I GWGCWC 2 cut(s) 869, 1851
Alw26I GTCTC 6 cut(s) 134, 148, 265, 302, 366, 1675
AlwI GGATC 2 cut(s) 1157, 1925
Ama87I CYCGRG 2 cut(s) 230, 425
Aor13HI TCCGGA 1 cut(s) 753
AoxI GGCC 3 cut(s) 124, 234, 776
ApeKI GCWGC 2 cut(s) 515, 2006
ApoI RAATTY 3 cut(s) 1285, 1497, 1722
ArsI GACNNNNNNTTYG 2 cut(s) 1203, 1235
Asp700I GAANNNNTTC 1 cut(s) 1722
AspLEI GCGC 4 cut(s) 224, 302, 343, 1860
AspS9I GGNCC 2 cut(s) 235, 327
AsuC2I CCSGG 1 cut(s) 466
AsuHPI GGTGA 3 cut(s) 104, 734, 1298
AvaI CYCGRG 2 cut(s) 230, 425
AvaII GGWCC 1 cut(s) 327
BaeI ACNNNNGTAYC 2 cut(s) 1527, 1560
BauI CACGAG 1 cut(s) 508
BbsI GAAGAC 1 cut(s) 1241
Bbv12I GWGCWC 2 cut(s) 869, 1851
BbvI GCAGC 2 cut(s) 502, 1993
BccI CCATC 8 cut(s) 155, 201, 261, 311, 658, 712, 719, 1327
BceAI ACGGC 4 cut(s) 74, 111, 125, 763
BcgI CGANNNNNNTGC 2 cut(s) 529, 563
BciT130I CCWGG 2 cut(s) 437, 1146
BciVI GTATCC 2 cut(s) 807, 1321
BclI TGATCA 1 cut(s) 396
BcnI CCSGG 1 cut(s) 466
BcoDI GTCTC 6 cut(s) 134, 148, 265, 302, 366, 1675
BfaI CTAG 2 cut(s) 495, 902
BfmI CTRYAG 1 cut(s) 1873
BfuI GTATCC 2 cut(s) 807, 1321
BisI GCNGC 2 cut(s) 516, 2007
BlsI GCNGC 2 cut(s) 517, 2008
Bme1390I CCNGG 3 cut(s) 437, 466, 1146
Bme18I GGWCC 1 cut(s) 327
BmeRI GACNNNNNGTC 1 cut(s) 379
BmeT110I CYCGRG 2 cut(s) 230, 425
BmgT120I GGNCC 2 cut(s) 235, 327
BmiI GGNNCC 2 cut(s) 19, 328
BmrFI CCNGG 3 cut(s) 437, 466, 1146
BmsI GCATC 9 cut(s) 328, 421, 631, 747, 1108, 1259, 1398, 1649, 1973
BoxI GACNNNNGTC 1 cut(s) 48
BpiI GAAGAC 1 cut(s) 1241
BpuEI CTTGAG 2 cut(s) 734, 1300
BpuMI CCSGG 1 cut(s) 466
Bsa29I ATCGAT 1 cut(s) 876
BsaHI GRCGYC 1 cut(s) 959
BsaI GGTCTC 1 cut(s) 302
BsaJI CCNNGG 5 cut(s) 330, 412, 426, 435, 1539
BsaWI WCCGGW 1 cut(s) 753
BsaXI ACNNNNNCTCC 4 cut(s) 194, 224, 813, 843
Bsc4I CCNNNNNNNGG 3 cut(s) 324, 417, 1914
Bse118I RCCGGY 1 cut(s) 14
Bse1I ACTGG 1 cut(s) 1389
Bse3DI GCAATG 6 cut(s) 987, 1062, 1249, 1395, 1418, 1825
BseAI TCCGGA 1 cut(s) 753
BseBI CCWGG 2 cut(s) 437, 1146
BseCI ATCGAT 1 cut(s) 876
BseDI CCNNGG 5 cut(s) 330, 412, 426, 435, 1539
BseGI GGATG 6 cut(s) 147, 436, 762, 1664, 1900, 1988
BseLI CCNNNNNNNGG 3 cut(s) 324, 417, 1914
BseMI GCAATG 6 cut(s) 987, 1062, 1249, 1395, 1418, 1825
BseMII CTCAG 2 cut(s) 1367, 1979
BseNI ACTGG 1 cut(s) 1389
BseRI GAGGAG 5 cut(s) 202, 205, 281, 661, 718
BseX3I CGGCCG 1 cut(s) 124
BseXI GCAGC 2 cut(s) 502, 1993
Bsh1236I CGCG 3 cut(s) 222, 300, 343
Bsh1285I CGRYCG 1 cut(s) 127
BshFI GGCC 3 cut(s) 126, 236, 778
BshVI ATCGAT 1 cut(s) 876
BsiEI CGRYCG 1 cut(s) 127
BsiHKAI GWGCWC 2 cut(s) 869, 1851
BsiHKCI CYCGRG 2 cut(s) 230, 425
BsiSI CCGG 4 cut(s) 15, 123, 465, 754
BslFI GGGAC 4 cut(s) 235, 408, 1630, 1925
BslI CCNNNNNNNGG 3 cut(s) 324, 417, 1914
BsmAI GTCTC 6 cut(s) 134, 148, 265, 302, 366, 1675
BsmBI CGTCTC 5 cut(s) 134, 148, 265, 366, 1675
BsmFI GGGAC 4 cut(s) 235, 408, 1630, 1925
BsmI GAATGC 2 cut(s) 790, 1057
BsnI GGCC 3 cut(s) 126, 236, 778
Bso31I GGTCTC 1 cut(s) 302
BsoBI CYCGRG 2 cut(s) 230, 425
Bsp1286I GDGCHC 2 cut(s) 869, 1851
Bsp13I TCCGGA 1 cut(s) 753
Bsp143I GATC 4 cut(s) 396, 1162, 1732, 1930
BspANI GGCC 3 cut(s) 126, 236, 778
BspCNI CTCAG 2 cut(s) 1368, 1980
BspDI ATCGAT 1 cut(s) 876
BspEI TCCGGA 1 cut(s) 753
BspFNI CGCG 3 cut(s) 222, 300, 343
BspLI GGNNCC 2 cut(s) 19, 328
BspPI GGATC 2 cut(s) 1157, 1925
BspQI GCTCTTC 1 cut(s) 1485
BspTNI GGTCTC 1 cut(s) 302
BsrDI GCAATG 6 cut(s) 987, 1062, 1249, 1395, 1418, 1825
BsrFI RCCGGY 1 cut(s) 14
BsrI ACTGG 1 cut(s) 1389
BssAI RCCGGY 1 cut(s) 14
BssECI CCNNGG 5 cut(s) 330, 412, 426, 435, 1539
BssMI GATC 4 cut(s) 396, 1162, 1732, 1930
BssNAI GTATAC 1 cut(s) 1071
BssNI GRCGYC 1 cut(s) 959
BssSI CACGAG 1 cut(s) 508
BssT1I CCWWGG 2 cut(s) 330, 412
Bst1107I GTATAC 1 cut(s) 1071
Bst2BI CACGAG 1 cut(s) 508
Bst2UI CCWGG 2 cut(s) 437, 1146
Bst4CI ACNGT 5 cut(s) 377, 1297, 1333, 1540, 1939
Bst6I CTCTTC 5 cut(s) 158, 163, 203, 1086, 1485
BstACI GRCGYC 1 cut(s) 959
BstC8I GCNNGC 2 cut(s) 16, 238
BstDEI CTNAG 2 cut(s) 1376, 1988
BstDSI CCRYGG 1 cut(s) 1539
BstENI CCTNNNNNAGG 1 cut(s) 1912
BstF5I GGATG 6 cut(s) 147, 436, 762, 1664, 1900, 1988
BstFNI CGCG 3 cut(s) 222, 300, 343
BstHHI GCGC 4 cut(s) 224, 302, 343, 1860
BstKTI GATC 4 cut(s) 399, 1165, 1735, 1933
BstMAI GTCTC 6 cut(s) 134, 148, 265, 302, 366, 1675
BstMBI GATC 4 cut(s) 396, 1162, 1732, 1930
BstMCI CGRYCG 1 cut(s) 127
BstMWI GCNNNNNNNGC 2 cut(s) 1061, 1855
BstNI CCWGG 2 cut(s) 437, 1146
BstNSI RCATGY 4 cut(s) 911, 1261, 1464, 1567
BstPAI GACNNNNGTC 1 cut(s) 48
BstSCI CCNGG 3 cut(s) 435, 464, 1144
BstSFI CTRYAG 1 cut(s) 1873
BstUI CGCG 3 cut(s) 222, 300, 343
BstV1I GCAGC 2 cut(s) 502, 1993
BstV2I GAAGAC 1 cut(s) 1241
BstZ17I GTATAC 1 cut(s) 1071
BstZI CGGCCG 1 cut(s) 124
Bsu15I ATCGAT 1 cut(s) 876
BsuI GTATCC 2 cut(s) 807, 1321
BsuRI GGCC 3 cut(s) 126, 236, 778
BsuTUI ATCGAT 1 cut(s) 876
BtgI CCRYGG 1 cut(s) 1539
BtsCI GGATG 6 cut(s) 147, 436, 762, 1664, 1900, 1988
Cac8I GCNNGC 2 cut(s) 16, 238
CfoI GCGC 4 cut(s) 224, 302, 343, 1860
Cfr10I RCCGGY 1 cut(s) 14
Cfr13I GGNCC 2 cut(s) 235, 327
ClaI ATCGAT 1 cut(s) 876
CsiI ACCWGGT 1 cut(s) 1144
Csp6I GTAC 2 cut(s) 1767, 1888
CspCI CAANNNNNGTGG 2 cut(s) 1941, 1976
CviQI GTAC 2 cut(s) 1767, 1888
DdeI CTNAG 2 cut(s) 1376, 1988
DpnI GATC 4 cut(s) 398, 1164, 1734, 1932
DpnII GATC 4 cut(s) 396, 1162, 1732, 1930
DraI TTTAAA 1 cut(s) 1693
DriI GACNNNNNGTC 1 cut(s) 379
EaeI YGGCCR 1 cut(s) 124
EagI CGGCCG 1 cut(s) 124
Eam1104I CTCTTC 5 cut(s) 158, 163, 203, 1086, 1485
Eam1105I GACNNNNNGTC 1 cut(s) 379
EarI CTCTTC 5 cut(s) 158, 163, 203, 1086, 1485
EclXI CGGCCG 1 cut(s) 124
Eco130I CCWWGG 2 cut(s) 330, 412
Eco31I GGTCTC 1 cut(s) 302
Eco32I GATATC 1 cut(s) 1044
Eco47I GGWCC 1 cut(s) 327
Eco52I CGGCCG 1 cut(s) 124
Eco57I CTGAAG 3 cut(s) 99, 1466, 1794
Eco88I CYCGRG 2 cut(s) 230, 425
EcoNI CCTNNNNNAGG 1 cut(s) 1912
EcoO109I RGGNCCY 1 cut(s) 327
EcoRI GAATTC 1 cut(s) 1722
EcoRII CCWGG 2 cut(s) 435, 1144
EcoRV GATATC 1 cut(s) 1044
EcoT14I CCWWGG 2 cut(s) 330, 412
ErhI CCWWGG 2 cut(s) 330, 412
Esp3I CGTCTC 5 cut(s) 134, 148, 265, 366, 1675
FaqI GGGAC 4 cut(s) 235, 408, 1630, 1925
FauI CCCGC 7 cut(s) 227, 245, 285, 336, 572, 760, 887
FbaI TGATCA 1 cut(s) 396
FblI GTMKAC 1 cut(s) 1070
Fnu4HI GCNGC 2 cut(s) 516, 2007
FokI GGATG 6 cut(s) 134, 443, 769, 1671, 1907, 1995
Fsp4HI GCNGC 2 cut(s) 516, 2007
FspBI CTAG 2 cut(s) 495, 902
GlaI GCGC 4 cut(s) 223, 301, 342, 1859
GluI GCNGC 2 cut(s) 516, 2007
HaeIII GGCC 3 cut(s) 126, 236, 778
HapII CCGG 4 cut(s) 15, 123, 465, 754
HhaI GCGC 4 cut(s) 224, 302, 343, 1860
Hin1I GRCGYC 1 cut(s) 959
Hin6I GCGC 4 cut(s) 222, 300, 341, 1858
HinP1I GCGC 4 cut(s) 222, 300, 341, 1858
HincII GTYRAC 3 cut(s) 1353, 1561, 1950
HindII GTYRAC 3 cut(s) 1353, 1561, 1950
HindIII AAGCTT 1 cut(s) 1965
HinfI GANTC 4 cut(s) 248, 1200, 1633, 1808
HpaI GTTAAC 1 cut(s) 1950
HpaII CCGG 4 cut(s) 15, 123, 465, 754
HphI GGTGA 3 cut(s) 104, 734, 1298
Hpy166II GTNNAC 6 cut(s) 989, 1071, 1353, 1382, 1561, 1950
Hpy188I TCNGA 2 cut(s) 134, 1377
Hpy188III TCNNGA 6 cut(s) 230, 307, 425, 713, 754, 972
Hpy8I GTNNAC 6 cut(s) 989, 1071, 1353, 1382, 1561, 1950
Hpy99I CGWCG 1 cut(s) 359
HpyAV CCTTC 7 cut(s) 75, 181, 274, 994, 1705, 1712, 1769
HpyCH4III ACNGT 5 cut(s) 377, 1297, 1333, 1540, 1939
HpyCH4IV ACGT 1 cut(s) 959
HpyCH4V TGCA 8 cut(s) 550, 794, 917, 980, 1055, 1411, 1445, 1466
HpyF10VI GCNNNNNNNGC 2 cut(s) 1061, 1855
HpyF3I CTNAG 2 cut(s) 1376, 1988
HpySE526I ACGT 1 cut(s) 959
Hsp92I GRCGYC 1 cut(s) 959
HspAI GCGC 4 cut(s) 222, 300, 341, 1858
Kpn2I TCCGGA 1 cut(s) 753
KroI GCCGGC 1 cut(s) 14
KroNI GCCGGC 1 cut(s) 16
Ksp22I TGATCA 1 cut(s) 396
KspAI GTTAAC 1 cut(s) 1950
Kzo9I GATC 4 cut(s) 396, 1162, 1732, 1930
LguI GCTCTTC 1 cut(s) 1485
LmnI GCTCC 4 cut(s) 23, 215, 346, 872
Lsp1109I GCAGC 2 cut(s) 502, 1993
LweI GCATC 9 cut(s) 328, 421, 631, 747, 1108, 1259, 1398, 1649, 1973
MabI ACCWGGT 1 cut(s) 1144
MaeI CTAG 2 cut(s) 495, 902
MaeII ACGT 1 cut(s) 959
MaeIII GTNAC 8 cut(s) 91, 1076, 1148, 1274, 1415, 1523, 1640, 1664
MalI GATC 4 cut(s) 398, 1164, 1734, 1932
MboI GATC 4 cut(s) 396, 1162, 1732, 1930
MboII GAAGA 9 cut(s) 145, 150, 190, 857, 1103, 1241, 1390, 1472, 1727
MfeI CAATTG 1 cut(s) 963
MhlI GDGCHC 2 cut(s) 869, 1851
MluCI AATT 7 cut(s) 696, 918, 963, 1285, 1497, 1694, 1722
MlyI GAGTC 1 cut(s) 257
MmeI TCCRAC 1 cut(s) 1080
MroI TCCGGA 1 cut(s) 753
MroNI GCCGGC 1 cut(s) 14
MroXI GAANNNNTTC 1 cut(s) 1722
MseI TTAA 5 cut(s) 831, 888, 1692, 1949, 2019
MslI CAYNNNNRTG 3 cut(s) 878, 912, 1377
MspI CCGG 4 cut(s) 15, 123, 465, 754
MspR9I CCNGG 3 cut(s) 437, 466, 1146
MunI CAATTG 1 cut(s) 963
Mva1269I GAATGC 2 cut(s) 790, 1057
MvaI CCWGG 2 cut(s) 437, 1146
MvnI CGCG 3 cut(s) 222, 300, 343
MwoI GCNNNNNNNGC 2 cut(s) 1061, 1855
NaeI GCCGGC 1 cut(s) 16
NciI CCSGG 1 cut(s) 466
NdeII GATC 4 cut(s) 396, 1162, 1732, 1930
NgoMIV GCCGGC 1 cut(s) 14
NlaIV GGNNCC 2 cut(s) 19, 328
NmuCI GTSAC 3 cut(s) 1148, 1415, 1664
NspI RCATGY 4 cut(s) 911, 1261, 1464, 1567
PaeR7I CTCGAG 1 cut(s) 230
PciI ACATGT 2 cut(s) 1257, 1563
PciSI GCTCTTC 1 cut(s) 1485
PctI GAATGC 2 cut(s) 790, 1057
PdiI GCCGGC 1 cut(s) 16
PdmI GAANNNNTTC 1 cut(s) 1722
PfeI GAWTC 3 cut(s) 1200, 1633, 1808
PflFI GACNNNGTC 1 cut(s) 1146
PkrI GCNGC 2 cut(s) 517, 2008
PleI GAGTC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 256
PpuMI RGGWCCY 1 cut(s) 327
PscI ACATGT 2 cut(s) 1257, 1563
PshAI GACNNNNGTC 1 cut(s) 48
Psp5II RGGWCCY 1 cut(s) 327
Psp6I CCWGG 2 cut(s) 435, 1144
PspGI CCWGG 2 cut(s) 435, 1144
PspN4I GGNNCC 2 cut(s) 19, 328
PspPI GGNCC 2 cut(s) 235, 327
PspPPI RGGWCCY 1 cut(s) 327
PsyI GACNNNGTC 1 cut(s) 1146
RsaI GTAC 2 cut(s) 1768, 1889
RsaNI GTAC 2 cut(s) 1767, 1888
RseI CAYNNNNRTG 3 cut(s) 878, 912, 1377
SapI GCTCTTC 1 cut(s) 1485
SaqAI TTAA 5 cut(s) 831, 888, 1692, 1949, 2019
SatI GCNGC 2 cut(s) 516, 2007
Sau3AI GATC 4 cut(s) 396, 1162, 1732, 1930
Sau96I GGNCC 2 cut(s) 235, 327
SchI GAGTC 1 cut(s) 257
ScrFI CCNGG 3 cut(s) 437, 466, 1146
SduI GDGCHC 2 cut(s) 869, 1851
SexAI ACCWGGT 1 cut(s) 1144
SfaNI GCATC 9 cut(s) 328, 421, 631, 747, 1108, 1259, 1398, 1649, 1973
SfcI CTRYAG 1 cut(s) 1873
Sfr274I CTCGAG 1 cut(s) 230
SinI GGWCC 1 cut(s) 327
SlaI CTCGAG 1 cut(s) 230
SmiI ATTTAAAT 1 cut(s) 1693
SmiMI CAYNNNNRTG 3 cut(s) 878, 912, 1377
SmlI CTYRAG 3 cut(s) 230, 713, 1279
SmoI CTYRAG 3 cut(s) 230, 713, 1279
Sse9I AATT 7 cut(s) 696, 918, 963, 1285, 1497, 1694, 1722
SspI AATATT 1 cut(s) 1471
SspMI CTAG 2 cut(s) 495, 902
StyD4I CCNGG 3 cut(s) 435, 464, 1144
StyI CCWWGG 2 cut(s) 330, 412
SwaI ATTTAAAT 1 cut(s) 1693
TaaI ACNGT 5 cut(s) 377, 1297, 1333, 1540, 1939
TaiI ACGT 1 cut(s) 962
TaqI TCGA 9 cut(s) 231, 246, 306, 354, 539, 876, 1267, 1747, 1840
TasI AATT 7 cut(s) 696, 918, 963, 1285, 1497, 1694, 1722
TatI WGTACW 1 cut(s) 1766
TfiI GAWTC 3 cut(s) 1200, 1633, 1808
Tru1I TTAA 5 cut(s) 831, 888, 1692, 1949, 2019
Tru9I TTAA 5 cut(s) 831, 888, 1692, 1949, 2019
TseFI GTSAC 3 cut(s) 1148, 1415, 1664
TseI GCWGC 2 cut(s) 515, 2006
Tsp45I GTSAC 3 cut(s) 1148, 1415, 1664
TspDTI ATGAA 6 cut(s) 470, 1035, 1184, 1192, 1490, 1724
TspGWI ACGGA 3 cut(s) 10, 1048, 1699
Tth111I GACNNNGTC 1 cut(s) 1146
VpaK11BI GGWCC 1 cut(s) 327
XagI CCTNNNNNAGG 1 cut(s) 1912
XapI RAATTY 3 cut(s) 1285, 1497, 1722
XceI RCATGY 4 cut(s) 911, 1261, 1464, 1567
XcmI CCANNNNNNNNNTGG 2 cut(s) 374, 1152
XhoI CTCGAG 1 cut(s) 230
XmiI GTMKAC 1 cut(s) 1070
XmnI GAANNNNTTC 1 cut(s) 1722
XspI CTAG 2 cut(s) 495, 902
ZraI GACGTC 1 cut(s) 960
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.