Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0012607

Physical Location & Seq

Genomic Coordinates Forward (+)

20980061 .. 20985769

Gene Structure 5709 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g17100.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGATCACCACAGAGCTTTTGGATGTTCAACCCAATGAACTCCAATTCACATTTGAGGTAAAGAAGCAGAGCACATGTACAATACAACTTGGGAACAGGTCTGACCAGTGTGTTGCTTTCAAGGTGAAAACCACTTCTCCAAAGAAATACTGTGTGCGGCCAAATACAGGCATCATAAAGCCCAGGGCAACATGTGATTTCACAGTTACTATGCAAGCTCAGAAAGTAGCTCCACCTGAATTGCAGTGTAAAGACAAGTTCCTAATCCAATGCACAGTTATTCCATTTGGGATATCAGAGGAGGAGGTTACATCTGACATGTTTGCAAAAGATAGTGGCAAATACGTTGAGGAGAAGAAGTTAAGAGTGGTGCTCACCAGCCCACCCCCTTTTCCAGAATTTCTACATGTTAATGGAGAGCCGAAGGAAGATCTTTGTTATGAAACTTCAGCACAAAAGGACAGAGTTCTGAATGAAGTTGAATACATACCTCCTCCTCAAAGGGTTGCTGACAATGTTGACGGTGAAAGTTATAAGGATGAGTCAAGAGCAGTTATGCATGCAGAGGAATTGAAACCAGAAAAAAATGCTGTTGTGTTGAATTTAGCAAAGGACTTGGAGGAGTTGAAATCAAAGCTCAGTACAGTGAATTTAAAGCTAAAAGAGGCTGATCTTACCATCATTAAGCTAACAGAAGAAAAGAGAATGACCACTCGAGAGAAGAATATGCTTAAACATGAATCGGAGTTGTTGAGTAAGAAGAACAATGCAAGAAGCATTATGGTTGGCTTCCCTCTTCTTTATATTTTTCTGGTTGCTCTTATCAGCATAGCAATCGGATACTTTGCGCATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071944 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

286

Amino Acids

32.32

Weight (kDa)

6.48

Isoelectric Point (pI)

38.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Motile_Sperm	PF00635	7 - 110	7.9e-31	MSP (Major sperm protein) domain
Cep192_D6	PF22076	7 - 90	1.1e-06	Cep192 domain 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17100 FvH4_4g17100 FvH4_4g17100
malus_domestica	MD13G1174400.v1.1 MD16G1175900.v1.1
prunus_persica	Prupe.1G142800_v2.0.a1 Prupe.1G142800_v2.0.a1
pyrus_communis	pycom13g15000 pycom16g14740
rosa_chinensis	RchiOBHm_Chr4g0420891
rosa_laevigata	RLG00000007727
rosa_multiflora	Rmu_sc0002006.1_g000007
rosa_roxburghii	Rroxscaffold_5G00363290
rosa_rugosa	Rorug04G0166700
rosa_samantha	Rh4AG228100 Rh4BG231200 Rh4CG243100 Rh4DG226400
rosa_wichuraiana	Rw4G019750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	534
Acc16I	TGCGCA	1 cut(s)	849
AciI	CCGC	1 cut(s)	157
AcoI	YGGCCR	1 cut(s)	158
AcsI	RAATTY	3 cut(s)	398, 601, 649
AcuI	CTGAAG	1 cut(s)	432
AfaI	GTAC	2 cut(s)	79, 643
AfiI	CCNNNNNNNGG	1 cut(s)	167
AflIII	ACRYGT	4 cut(s)	74, 191, 318, 406
AgsI	TTSAA	6 cut(s)	29, 121, 482, 574, 601, 628
AjnI	CCWGG	1 cut(s)	182
AluBI	AGCT	6 cut(s)	16, 218, 230, 637, 658, 688
AluI	AGCT	6 cut(s)	16, 218, 230, 637, 658, 688
Alw21I	GWGCWC	2 cut(s)	74, 375
Ama87I	CYCGRG	1 cut(s)	714
AoxI	GGCC	1 cut(s)	158
ApoI	RAATTY	3 cut(s)	398, 601, 649
AspLEI	GCGC	1 cut(s)	850
AsuHPI	GGTGA	3 cut(s)	136, 367, 536
AvaI	CYCGRG	1 cut(s)	714
Bbv12I	GWGCWC	2 cut(s)	74, 375
BccI	CCATC	1 cut(s)	686
BcgI	CGANNNNNNTGC	2 cut(s)	817, 851
BciT130I	CCWGG	1 cut(s)	184
BciVI	GTATCC	1 cut(s)	833
BclI	TGATCA	1 cut(s)	3
BfuI	GTATCC	1 cut(s)	833
BglII	AGATCT	1 cut(s)	430
BisI	GCNGC	1 cut(s)	158
BlsI	GCNGC	1 cut(s)	159
Bme1390I	CCNGG	1 cut(s)	184
BmeT110I	CYCGRG	1 cut(s)	714
BmrFI	CCNGG	1 cut(s)	184
BmsI	GCATC	1 cut(s)	180
BplI	GAGNNNNNCTC	2 cut(s)	357, 389
BsaJI	CCNNGG	2 cut(s)	182, 183
BsaXI	ACNNNNNCTCC	4 cut(s)	121, 151, 344, 374
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	106
BseBI	CCWGG	1 cut(s)	184
BseDI	CCNNGG	2 cut(s)	182, 183
BseGI	GGATG	3 cut(s)	28, 544, 850
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMII	CTCAG	2 cut(s)	233, 652
BseNI	ACTGG	1 cut(s)	106
BseRI	GAGGAG	6 cut(s)	314, 317, 365, 483, 486, 635
BshFI	GGCC	1 cut(s)	160
BsiHKAI	GWGCWC	2 cut(s)	74, 375
BsiHKCI	CYCGRG	1 cut(s)	714
BslI	CCNNNNNNNGG	1 cut(s)	167
BsnI	GGCC	1 cut(s)	160
BsoBI	CYCGRG	1 cut(s)	714
Bsp1286I	GDGCHC	2 cut(s)	74, 375
Bsp1407I	TGTACA	1 cut(s)	77
Bsp143I	GATC	3 cut(s)	3, 430, 670
BspACI	CCGC	1 cut(s)	157
BspANI	GGCC	1 cut(s)	160
BspCNI	CTCAG	2 cut(s)	232, 651
BsrGI	TGTACA	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	106
BssECI	CCNNGG	2 cut(s)	182, 183
BssMI	GATC	3 cut(s)	3, 430, 670
Bst2UI	CCWGG	1 cut(s)	184
Bst4CI	ACNGT	5 cut(s)	152, 205, 277, 524, 646
Bst6I	CTCTTC	1 cut(s)	801
BstAUI	TGTACA	1 cut(s)	77
BstC8I	GCNNGC	2 cut(s)	216, 561
BstDEI	CTNAG	3 cut(s)	219, 638, 855
BstF5I	GGATG	3 cut(s)	28, 544, 850
BstHHI	GCGC	1 cut(s)	850
BstKTI	GATC	3 cut(s)	6, 433, 673
BstMBI	GATC	3 cut(s)	3, 430, 670
BstNI	CCWGG	1 cut(s)	184
BstNSI	RCATGY	5 cut(s)	78, 195, 322, 410, 563
BstSCI	CCNGG	1 cut(s)	182
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
BsuI	GTATCC	1 cut(s)	833
BsuRI	GGCC	1 cut(s)	160
BtsCI	GGATG	3 cut(s)	28, 544, 850
BtsI	GCAGTG	1 cut(s)	251
BtsIMutI	CAGTG	3 cut(s)	113, 251, 651
Cac8I	GCNNGC	2 cut(s)	216, 561
CfoI	GCGC	1 cut(s)	850
Csp6I	GTAC	2 cut(s)	78, 642
CspCI	CAANNNNNGTGG	2 cut(s)	222, 257
CviAII	CATG	6 cut(s)	75, 192, 319, 407, 560, 737
CviQI	GTAC	2 cut(s)	78, 642
DdeI	CTNAG	3 cut(s)	219, 638, 855
DpnI	GATC	3 cut(s)	5, 432, 672
DpnII	GATC	3 cut(s)	3, 430, 670
DraI	TTTAAA	1 cut(s)	654
EaeI	YGGCCR	1 cut(s)	158
Eam1104I	CTCTTC	1 cut(s)	801
EarI	CTCTTC	1 cut(s)	801
Eco32I	GATATC	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	432
Eco88I	CYCGRG	1 cut(s)	714
EcoRII	CCWGG	1 cut(s)	182
EcoRV	GATATC	1 cut(s)	294
EcoT22I	ATGCAT	1 cut(s)	561
FaeI	CATG	6 cut(s)	78, 195, 322, 410, 563, 740
FatI	CATG	6 cut(s)	74, 191, 318, 406, 559, 736
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	158
FokI	GGATG	3 cut(s)	35, 551, 837
Fsp4HI	GCNGC	1 cut(s)	158
FspI	TGCGCA	1 cut(s)	849
GlaI	GCGC	1 cut(s)	849
GluI	GCNGC	1 cut(s)	158
HaeIII	GGCC	1 cut(s)	160
HhaI	GCGC	1 cut(s)	850
Hin1II	CATG	6 cut(s)	78, 195, 322, 410, 563, 740
Hin6I	GCGC	1 cut(s)	848
HinP1I	GCGC	1 cut(s)	848
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HinfI	GANTC	2 cut(s)	542, 740
HphI	GGTGA	3 cut(s)	136, 367, 536
Hpy166II	GTNNAC	1 cut(s)	520
Hpy188I	TCNGA	7 cut(s)	103, 222, 298, 316, 471, 745, 839
Hpy188III	TCNNGA	3 cut(s)	395, 546, 716
Hpy8I	GTNNAC	1 cut(s)	520
HpyAV	CCTTC	1 cut(s)	418
HpyCH4III	ACNGT	5 cut(s)	152, 205, 277, 524, 646
HpyCH4IV	ACGT	1 cut(s)	345
HpyCH4V	TGCA	7 cut(s)	214, 244, 273, 326, 559, 563, 770
HpyF3I	CTNAG	3 cut(s)	219, 638, 855
HpySE526I	ACGT	1 cut(s)	345
Hsp92II	CATG	6 cut(s)	78, 195, 322, 410, 563, 740
HspAI	GCGC	1 cut(s)	848
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 430, 670
LmnI	GCTCC	1 cut(s)	235
LweI	GCATC	1 cut(s)	180
MaeII	ACGT	1 cut(s)	345
MaeIII	GTNAC	2 cut(s)	205, 307
MalI	GATC	3 cut(s)	5, 432, 672
MboI	GATC	3 cut(s)	3, 430, 670
MboII	GAAGA	6 cut(s)	367, 440, 707, 733, 772, 788
MflI	RGATCY	1 cut(s)	430
MhlI	GDGCHC	2 cut(s)	74, 375
MluCI	AATT	6 cut(s)	44, 239, 398, 569, 601, 649
MlyI	GAGTC	1 cut(s)	551
Mph1103I	ATGCAT	1 cut(s)	561
MseI	TTAA	5 cut(s)	362, 411, 653, 684, 732
MslI	CAYNNNNRTG	1 cut(s)	411
MspR9I	CCNGG	1 cut(s)	184
MvaI	CCWGG	1 cut(s)	184
NdeII	GATC	3 cut(s)	3, 430, 670
NlaIII	CATG	6 cut(s)	78, 195, 322, 410, 563, 740
NsbI	TGCGCA	1 cut(s)	849
NsiI	ATGCAT	1 cut(s)	561
NspI	RCATGY	5 cut(s)	78, 195, 322, 410, 563
PaeI	GCATGC	1 cut(s)	563
PaeR7I	CTCGAG	1 cut(s)	714
PasI	CCCWGGG	1 cut(s)	183
PciI	ACATGT	4 cut(s)	74, 191, 318, 406
PfeI	GAWTC	1 cut(s)	740
PkrI	GCNGC	1 cut(s)	159
PleI	GAGTC	1 cut(s)	550
PpsI	GAGTC	1 cut(s)	550
PscI	ACATGT	4 cut(s)	74, 191, 318, 406
PsiI	TTATAA	1 cut(s)	534
Psp6I	CCWGG	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	182
PsuI	RGATCY	1 cut(s)	430
RsaI	GTAC	2 cut(s)	79, 643
RsaNI	GTAC	2 cut(s)	78, 642
RseI	CAYNNNNRTG	1 cut(s)	411
SaqAI	TTAA	5 cut(s)	362, 411, 653, 684, 732
SatI	GCNGC	1 cut(s)	158
Sau3AI	GATC	3 cut(s)	3, 430, 670
SchI	GAGTC	1 cut(s)	551
ScrFI	CCNGG	1 cut(s)	184
SduI	GDGCHC	2 cut(s)	74, 375
SfaNI	GCATC	1 cut(s)	180
Sfr274I	CTCGAG	1 cut(s)	714
SlaI	CTCGAG	1 cut(s)	714
SmiMI	CAYNNNNRTG	1 cut(s)	411
SmlI	CTYRAG	1 cut(s)	714
SmoI	CTYRAG	1 cut(s)	714
SphI	GCATGC	1 cut(s)	563
Sse9I	AATT	6 cut(s)	44, 239, 398, 569, 601, 649
SsiI	CCGC	1 cut(s)	157
StyD4I	CCNGG	1 cut(s)	182
TaaI	ACNGT	5 cut(s)	152, 205, 277, 524, 646
TaiI	ACGT	1 cut(s)	348
TaqI	TCGA	1 cut(s)	715
TasI	AATT	6 cut(s)	44, 239, 398, 569, 601, 649
TatI	WGTACW	2 cut(s)	77, 641
TauI	GCSGC	1 cut(s)	160
TfiI	GAWTC	1 cut(s)	740
Tru1I	TTAA	5 cut(s)	362, 411, 653, 684, 732
Tru9I	TTAA	5 cut(s)	362, 411, 653, 684, 732
TscAI	CASTG	3 cut(s)	113, 251, 651
TspDTI	ATGAA	4 cut(s)	51, 456, 489, 753
TspRI	CASTG	3 cut(s)	113, 251, 651
XapI	RAATTY	3 cut(s)	398, 601, 649
XceI	RCATGY	5 cut(s)	78, 195, 322, 410, 563
XcmI	CCANNNNNNNNNTGG	1 cut(s)	16
XhoI	CTCGAG	1 cut(s)	714
Zsp2I	ATGCAT	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.