Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0012607

Physical Location & Seq

Genomic Coordinates Reverse (-)

14916185 .. 14919749

Gene Structure 3565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1175900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGACGACGGCGCCAGAGCTTCTTGATGTTCATCCCCCCGAGCTCACATTCACTTTTGAGGTTAAGAAGCAGAGTACGTGCTCGATTCAACTCGGCAACAAGTCCGATCGCTATGTTGCTTTCAAGGTGAAGACCACTTCTCCGAAGAAATATTGCGTGCGGCCGAATGCAGGCATTGTAAAGCCTAACACAACATGTGATTTCACAGTTACTATGCAAGCTCAGAATGTAGCTCCACCGGATTTGCTGTGCAAAGACAAGTTCCTAATCCAGAGCACCGTTATTCCTTTTGGGACAACTGAACAGGAGATTACATCTCAGATGTTTTCAAAAGATAGCAGCAGATACGTTGAAGAAAGGAGGTTAAAAGTGATGCTTATTAGCCCAACCGCATCCCCAGTATTTGTACCAATCAATGGAGAGTCAAAGCAAGATCCATGTTATGACACTTCAGTGAAAATGGATAGGGTTTTGAGTGGAGTTGAAAATATACCTCCGAGTCATGGGGACGTGGATGAGTCAAGAGCAGCTAAGGATGTTGTGGCATCAAAACCAGCTAAGGATGTGGAGGAATTGAAACCAGCAAAGGACATGAAGGATTTGAAACCAGCTAAAGATATGGAGGAATCGAAACCAACTAAAAATATGGAAGAATCGAAAACAGCTAAGGACATGGAGGAACTGGAACCAGCTAGGGGTGCTGCTGAGTTGAATTTAACAAAGGATTTTGAGGAACTGAAATCAAAGCTAAATACAGTGGGTTCAAAGCTAAAAGAGGCTGAACTTACCATCATGAAGTTAATGGAAGAGAGTAGCAGGTCCACTCGAGAGAAGAATATGCTTAAACATGAATTGGAGTCGTTGAGGAGGAGGAAGAACAATTTAAAAACAGTCACGGTTGGCTTCCCTCTCTTCCATGTTTGTATGGTTGCCCTCGTCAGTCTAGCAATCGGATACTATATCCATCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071944 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

324

Amino Acids

36.21

Weight (kDa)

8.07

Isoelectric Point (pI)

47.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Motile_Sperm	PF00635	8 - 112	2.1e-30	MSP (Major sperm protein) domain
Cep192_D6	PF22076	9 - 77	2.1e-06	Cep192 domain 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17100 FvH4_4g17100 FvH4_4g17100
malus_domestica	MD13G1174400.v1.1 MD16G1175900.v1.1
prunus_persica	Prupe.1G142800_v2.0.a1 Prupe.1G142800_v2.0.a1
pyrus_communis	pycom13g15000 pycom16g14740
rosa_chinensis	RchiOBHm_Chr4g0420891
rosa_laevigata	RLG00000007727
rosa_multiflora	Rmu_sc0002006.1_g000007
rosa_roxburghii	Rroxscaffold_5G00363290
rosa_rugosa	Rorug04G0166700
rosa_samantha	Rh4AG228100 Rh4BG231200 Rh4CG243100 Rh4DG226400
rosa_wichuraiana	Rw4G019750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	807
AccB1I	GGYRCC	1 cut(s)	10
AccB7I	CCANNNNNTGG	1 cut(s)	416
AciI	CCGC	2 cut(s)	160, 390
AclWI	GGATC	1 cut(s)	428
AcoI	YGGCCR	1 cut(s)	161
AcsI	RAATTY	1 cut(s)	712
AcuI	CTGAAG	1 cut(s)	435
AcyI	GRCGYC	1 cut(s)	11
AfaI	GTAC	2 cut(s)	76, 408
AfiI	CCNNNNNNNGG	4 cut(s)	170, 416, 503, 695
AflIII	ACRYGT	1 cut(s)	194
AgsI	TTSAA	9 cut(s)	89, 124, 330, 353, 485, 577, 604, 712, 765
AjiI	CACGTC	1 cut(s)	511
AleI	CACNNNNGTG	1 cut(s)	452
Alw21I	GWGCWC	3 cut(s)	45, 83, 278
AlwI	GGATC	1 cut(s)	428
Ama87I	CYCGRG	2 cut(s)	38, 825
AoxI	GGCC	1 cut(s)	161
ApeKI	GCWGC	3 cut(s)	339, 527, 701
ApoI	RAATTY	1 cut(s)	712
AspLEI	GCGC	1 cut(s)	13
AspS9I	GGNCC	1 cut(s)	819
AsuHPI	GGTGA	1 cut(s)	139
AvaI	CYCGRG	2 cut(s)	38, 825
AvaII	GGWCC	1 cut(s)	819
BanI	GGYRCC	1 cut(s)	10
BanII	GRGCYC	1 cut(s)	45
BbsI	GAAGAC	1 cut(s)	137
Bbv12I	GWGCWC	3 cut(s)	45, 83, 278
BbvI	GCAGC	3 cut(s)	351, 539, 688
BccI	CCATC	1 cut(s)	797
BceAI	ACGGC	1 cut(s)	24
BciVI	GTATCC	1 cut(s)	947
BfaI	CTAG	2 cut(s)	693, 944
BfoI	RGCGCY	1 cut(s)	14
BfuAI	ACCTGC	1 cut(s)	807
BfuI	GTATCC	1 cut(s)	947
BisI	GCNGC	4 cut(s)	161, 340, 528, 702
BlsI	GCNGC	4 cut(s)	162, 341, 529, 703
Bme18I	GGWCC	1 cut(s)	819
BmeT110I	CYCGRG	2 cut(s)	38, 825
BmgBI	CACGTC	1 cut(s)	511
BmgT120I	GGNCC	1 cut(s)	819
BmiI	GGNNCC	2 cut(s)	12, 687
BmrI	ACTGGG	1 cut(s)	392
BmsI	GCATC	3 cut(s)	363, 401, 554
BmuI	ACTGGG	1 cut(s)	392
BpiI	GAAGAC	1 cut(s)	137
Bpu10I	CCTNAGC	3 cut(s)	531, 558, 666
BsaAI	YACGTR	1 cut(s)	78
BsaBI	GATNNNNATC	1 cut(s)	30
BsaHI	GRCGYC	1 cut(s)	11
BsaWI	WCCGGW	1 cut(s)	238
BsaXI	ACNNNNNCTCC	2 cut(s)	124, 154
Bsc4I	CCNNNNNNNGG	4 cut(s)	170, 416, 503, 695
Bse1I	ACTGG	2 cut(s)	398, 687
Bse8I	GATNNNNATC	1 cut(s)	30
BseGI	GGATG	6 cut(s)	31, 392, 520, 541, 568, 964
BseJI	GATNNNNATC	1 cut(s)	30
BseLI	CCNNNNNNNGG	4 cut(s)	170, 416, 503, 695
BseMII	CTCAG	3 cut(s)	236, 332, 696
BseNI	ACTGG	2 cut(s)	398, 687
BseRI	GAGGAG	2 cut(s)	880, 883
BseX3I	CGGCCG	1 cut(s)	161
BseXI	GCAGC	3 cut(s)	351, 539, 688
Bsh1285I	CGRYCG	2 cut(s)	109, 164
BshFI	GGCC	1 cut(s)	163
BshNI	GGYRCC	1 cut(s)	10
BsiEI	CGRYCG	2 cut(s)	109, 164
BsiHKAI	GWGCWC	3 cut(s)	45, 83, 278
BsiHKCI	CYCGRG	2 cut(s)	38, 825
BsiSI	CCGG	1 cut(s)	239
BslFI	GGGAC	2 cut(s)	307, 521
BslI	CCNNNNNNNGG	4 cut(s)	170, 416, 503, 695
BsmFI	GGGAC	2 cut(s)	307, 521
BsmI	GAATGC	1 cut(s)	172
BsnI	GGCC	1 cut(s)	163
BsoBI	CYCGRG	2 cut(s)	38, 825
Bsp1286I	GDGCHC	3 cut(s)	45, 83, 278
Bsp143I	GATC	2 cut(s)	106, 433
BspACI	CCGC	2 cut(s)	160, 390
BspANI	GGCC	1 cut(s)	163
BspCNI	CTCAG	3 cut(s)	235, 331, 697
BspHI	TCATGA	1 cut(s)	792
BspLI	GGNNCC	2 cut(s)	12, 687
BspMI	ACCTGC	1 cut(s)	807
BspPI	GGATC	1 cut(s)	428
BspT107I	GGYRCC	1 cut(s)	10
BsrI	ACTGG	2 cut(s)	398, 687
BssMI	GATC	2 cut(s)	106, 433
BssNI	GRCGYC	1 cut(s)	11
Bst4CI	ACNGT	5 cut(s)	208, 280, 757, 892, 898
Bst6I	CTCTTC	2 cut(s)	801, 917
BstACI	GRCGYC	1 cut(s)	11
BstBAI	YACGTR	1 cut(s)	78
BstC8I	GCNNGC	3 cut(s)	158, 172, 219
BstDEI	CTNAG	6 cut(s)	222, 318, 531, 558, 666, 705
BstF5I	GGATG	6 cut(s)	31, 392, 520, 541, 568, 964
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	2 cut(s)	109, 436
BstMBI	GATC	2 cut(s)	106, 433
BstMCI	CGRYCG	2 cut(s)	109, 164
BstMWI	GCNNNNNNNGC	1 cut(s)	698
BstNSI	RCATGY	1 cut(s)	198
BstV1I	GCAGC	3 cut(s)	351, 539, 688
BstV2I	GAAGAC	1 cut(s)	137
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
BstZI	CGGCCG	1 cut(s)	161
BsuI	GTATCC	1 cut(s)	947
BsuRI	GGCC	1 cut(s)	163
BtrI	CACGTC	1 cut(s)	511
BtsCI	GGATG	6 cut(s)	31, 392, 520, 541, 568, 964
BtsIMutI	CAGTG	2 cut(s)	459, 762
BveI	ACCTGC	1 cut(s)	807
Cac8I	GCNNGC	3 cut(s)	158, 172, 219
CciI	TCATGA	1 cut(s)	792
CfoI	GCGC	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	819
Csp6I	GTAC	2 cut(s)	75, 407
CspCI	CAANNNNNGTGG	2 cut(s)	225, 260
CviAII	CATG	8 cut(s)	195, 438, 503, 592, 673, 793, 848, 917
CviQI	GTAC	2 cut(s)	75, 407
DdeI	CTNAG	6 cut(s)	222, 318, 531, 558, 666, 705
DinI	GGCGCC	1 cut(s)	12
DpnI	GATC	2 cut(s)	108, 435
DpnII	GATC	2 cut(s)	106, 433
DraI	TTTAAA	1 cut(s)	885
EaeI	YGGCCR	1 cut(s)	161
EagI	CGGCCG	1 cut(s)	161
Eam1104I	CTCTTC	2 cut(s)	801, 917
EarI	CTCTTC	2 cut(s)	801, 917
Ecl136II	GAGCTC	1 cut(s)	43
EclXI	CGGCCG	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	819
Eco52I	CGGCCG	1 cut(s)	161
Eco53kI	GAGCTC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	435
Eco88I	CYCGRG	2 cut(s)	38, 825
EcoICRI	GAGCTC	1 cut(s)	43
EcoT38I	GRGCYC	1 cut(s)	45
EgeI	GGCGCC	1 cut(s)	12
EheI	GGCGCC	1 cut(s)	12
FaeI	CATG	8 cut(s)	198, 441, 506, 595, 676, 796, 851, 920
FalI	AAGNNNNNCTT	2 cut(s)	360, 392
FaqI	GGGAC	2 cut(s)	307, 521
FatI	CATG	8 cut(s)	194, 437, 502, 591, 672, 792, 847, 916
Fnu4HI	GCNGC	4 cut(s)	161, 340, 528, 702
FokI	GGATG	6 cut(s)	18, 379, 527, 548, 575, 951
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	4 cut(s)	161, 340, 528, 702
FspBI	CTAG	2 cut(s)	693, 944
GlaI	GCGC	1 cut(s)	12
GluI	GCNGC	4 cut(s)	161, 340, 528, 702
HaeII	RGCGCY	1 cut(s)	14
HaeIII	GGCC	1 cut(s)	163
HapII	CCGG	1 cut(s)	239
HhaI	GCGC	1 cut(s)	13
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	8 cut(s)	198, 441, 506, 595, 676, 796, 851, 920
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HinfI	GANTC	7 cut(s)	85, 422, 499, 518, 626, 653, 857
HpaII	CCGG	1 cut(s)	239
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	1 cut(s)	822
Hpy188I	TCNGA	6 cut(s)	106, 144, 225, 321, 498, 953
Hpy188III	TCNNGA	5 cut(s)	23, 271, 522, 793, 827
Hpy8I	GTNNAC	1 cut(s)	822
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	589
HpyCH4III	ACNGT	5 cut(s)	208, 280, 757, 892, 898
HpyCH4IV	ACGT	3 cut(s)	77, 348, 510
HpyCH4V	TGCA	3 cut(s)	170, 217, 252
HpyF10VI	GCNNNNNNNGC	1 cut(s)	698
HpyF3I	CTNAG	6 cut(s)	222, 318, 531, 558, 666, 705
HpySE526I	ACGT	3 cut(s)	77, 348, 510
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	8 cut(s)	198, 441, 506, 595, 676, 796, 851, 920
HspAI	GCGC	1 cut(s)	11
KasI	GGCGCC	1 cut(s)	10
Kzo9I	GATC	2 cut(s)	106, 433
LmnI	GCTCC	1 cut(s)	238
Lsp1109I	GCAGC	3 cut(s)	351, 539, 688
LweI	GCATC	3 cut(s)	363, 401, 554
MaeI	CTAG	2 cut(s)	693, 944
MaeII	ACGT	3 cut(s)	77, 348, 510
MaeIII	GTNAC	2 cut(s)	208, 892
MalI	GATC	2 cut(s)	108, 435
MboI	GATC	2 cut(s)	106, 433
MboII	GAAGA	8 cut(s)	142, 157, 365, 662, 818, 844, 886, 904
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	3 cut(s)	45, 83, 278
MluCI	AATT	4 cut(s)	572, 712, 851, 880
Mly113I	GGCGCC	1 cut(s)	11
MlyI	GAGTC	4 cut(s)	431, 508, 527, 866
MseI	TTAA	6 cut(s)	63, 365, 716, 800, 843, 884
MslI	CAYNNNNRTG	1 cut(s)	452
MspI	CCGG	1 cut(s)	239
Mva1269I	GAATGC	1 cut(s)	172
MwoI	GCNNNNNNNGC	1 cut(s)	698
NarI	GGCGCC	1 cut(s)	11
NdeII	GATC	2 cut(s)	106, 433
NlaIII	CATG	8 cut(s)	198, 441, 506, 595, 676, 796, 851, 920
NlaIV	GGNNCC	2 cut(s)	12, 687
NmeAIII	GCCGAG	1 cut(s)	72
NmuCI	GTSAC	1 cut(s)	892
NspI	RCATGY	1 cut(s)	198
OliI	CACNNNNGTG	1 cut(s)	452
PaeR7I	CTCGAG	1 cut(s)	825
PagI	TCATGA	1 cut(s)	792
PciI	ACATGT	1 cut(s)	194
PctI	GAATGC	1 cut(s)	172
PfeI	GAWTC	3 cut(s)	85, 626, 653
PflMI	CCANNNNNTGG	1 cut(s)	416
PkrI	GCNGC	4 cut(s)	162, 341, 529, 703
Ple19I	CGATCG	1 cut(s)	109
PleI	GAGTC	4 cut(s)	430, 507, 526, 865
PluTI	GGCGCC	1 cut(s)	14
PpsI	GAGTC	4 cut(s)	430, 507, 526, 865
Ppu21I	YACGTR	1 cut(s)	78
PscI	ACATGT	1 cut(s)	194
Psp124BI	GAGCTC	1 cut(s)	45
PspN4I	GGNNCC	2 cut(s)	12, 687
PspPI	GGNCC	1 cut(s)	819
PsuI	RGATCY	1 cut(s)	433
PvuI	CGATCG	1 cut(s)	109
RsaI	GTAC	2 cut(s)	76, 408
RsaNI	GTAC	2 cut(s)	75, 407
RseI	CAYNNNNRTG	1 cut(s)	452
SacI	GAGCTC	1 cut(s)	45
SaqAI	TTAA	6 cut(s)	63, 365, 716, 800, 843, 884
SatI	GCNGC	4 cut(s)	161, 340, 528, 702
Sau3AI	GATC	2 cut(s)	106, 433
Sau96I	GGNCC	1 cut(s)	819
SchI	GAGTC	4 cut(s)	431, 508, 527, 866
SduI	GDGCHC	3 cut(s)	45, 83, 278
SfaNI	GCATC	3 cut(s)	363, 401, 554
SfoI	GGCGCC	1 cut(s)	12
Sfr274I	CTCGAG	1 cut(s)	825
SinI	GGWCC	1 cut(s)	819
SlaI	CTCGAG	1 cut(s)	825
SmiMI	CAYNNNNRTG	1 cut(s)	452
SmlI	CTYRAG	1 cut(s)	825
SmoI	CTYRAG	1 cut(s)	825
Sse9I	AATT	4 cut(s)	572, 712, 851, 880
SsiI	CCGC	2 cut(s)	160, 390
SspDI	GGCGCC	1 cut(s)	10
SspI	AATATT	1 cut(s)	152
SspMI	CTAG	2 cut(s)	693, 944
SstI	GAGCTC	1 cut(s)	45
TaaI	ACNGT	5 cut(s)	208, 280, 757, 892, 898
TaiI	ACGT	3 cut(s)	80, 351, 513
TaqI	TCGA	4 cut(s)	83, 629, 656, 826
TasI	AATT	4 cut(s)	572, 712, 851, 880
TauI	GCSGC	1 cut(s)	163
TfiI	GAWTC	3 cut(s)	85, 626, 653
Tru1I	TTAA	6 cut(s)	63, 365, 716, 800, 843, 884
Tru9I	TTAA	6 cut(s)	63, 365, 716, 800, 843, 884
TscAI	CASTG	2 cut(s)	459, 762
TseFI	GTSAC	1 cut(s)	892
TseI	GCWGC	3 cut(s)	339, 527, 701
Tsp45I	GTSAC	1 cut(s)	892
TspDTI	ATGAA	4 cut(s)	20, 608, 809, 864
TspGWI	ACGGA	1 cut(s)	957
TspRI	CASTG	2 cut(s)	459, 762
Van91I	CCANNNNNTGG	1 cut(s)	416
VpaK11BI	GGWCC	1 cut(s)	819
XapI	RAATTY	1 cut(s)	712
XceI	RCATGY	1 cut(s)	198
XhoI	CTCGAG	1 cut(s)	825
XspI	CTAG	2 cut(s)	693, 944

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.