Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012607

Physical Location & Seq

Genomic Coordinates Reverse (-)

11229138 .. 11232963

Gene Structure 3826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G142800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGATGACCACAGAGCTTTTGGATGTTCAACCCTGCGAACTCAAATTCACATTTGAGTTGAAGAAGCAAAGTTTATGCTCGATTCAACTTGGCAATAAGTCTGATCACTATGTTGCTTTCAAGGTAAAAACCACTTCTCCAAAGAAATACTGCGTGCGGCCTAACGCTGGCATCATAAAACCCAAGGCAACATGTGATTTCACAGTTACCATGCAAGCTCAGCGTGTCGCGCCACCTGATTTGCAGTGCAAAGACAAGTTCCTTATCCTGAGCACAGTTATTCCATTCGGGACAACTGAAGAGGAAATTACATCTGACATGTTCTCAAAAGATAGTGGCAAATACATTGAAGAGAAGAAACTAAGAGTGGTGCTCATCAGCCCACCCTCTTCCCCAGTATTTGTACCAATTAATGGAGAGTCGAAGCAAGATCCATGTTATGAAAATTCAGTGAAAAAGGATAGAGTTCTGAGTGGAGTTGAAAACATACCCCCGCCTCATGGGGTTGCTGAGGATGTTGAGGGGTTTGAAACTTATAAGGACATGGATGAGTCAAGAGCAGTTAAGGATGTCGAGGAATTGAAACCAGCTAAGGATGTGGTGGAATTGAAACCAGCTAAGGTTGTGGAGGAATTGAAACCAGCTAAGGTTGTGGAGGAATTGAAACCAGCTAAGGATGCTGTTGCGTTGAATTTAACGAAGGATTTTGATGAATTGAAATTGAAGCTAAATACATTGGATTCAAAGCTAAAAGAGGCTGAACTTACCATCATGAAGCTAACAGAAGATAGAAGCATGACCACTCGCGAGAAGAATATGCTTAAACATGAATTGGAGTTGCTGAGGAGGAAGAACAATGTCAAAAGGATTATGGTTGGCTTCCCTCTCTTTTATGTTTGTATGGTTGCTCTCATCAGTCTAGCAATCGGATACTATATCCATCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071944 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

316

Amino Acids

35.63

Weight (kDa)

7.52

Isoelectric Point (pI)

43.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17100 FvH4_4g17100 FvH4_4g17100
malus_domestica	MD13G1174400.v1.1 MD16G1175900.v1.1
prunus_persica	Prupe.1G142800_v2.0.a1 Prupe.1G142800_v2.0.a1
pyrus_communis	pycom13g15000 pycom16g14740
rosa_chinensis	RchiOBHm_Chr4g0420891
rosa_laevigata	RLG00000007727
rosa_multiflora	Rmu_sc0002006.1_g000007
rosa_roxburghii	Rroxscaffold_5G00363290
rosa_rugosa	Rorug04G0166700
rosa_samantha	Rh4AG228100 Rh4BG231200 Rh4CG243100 Rh4DG226400
rosa_wichuraiana	Rw4G019750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	537
AccB7I	CCANNNNNTGG	1 cut(s)	413
AccII	CGCG	2 cut(s)	230, 807
AciI	CCGC	2 cut(s)	157, 494
AclWI	GGATC	1 cut(s)	425
AcsI	RAATTY	3 cut(s)	44, 445, 691
AcuI	CTGAAG	1 cut(s)	318
AfaI	GTAC	1 cut(s)	405
AfiI	CCNNNNNNNGG	3 cut(s)	167, 413, 500
AflIII	ACRYGT	2 cut(s)	191, 318
AluBI	AGCT	9 cut(s)	16, 218, 590, 617, 644, 671, 727, 748, 778
AluI	AGCT	9 cut(s)	16, 218, 590, 617, 644, 671, 727, 748, 778
Alw21I	GWGCWC	2 cut(s)	275, 375
AlwI	GGATC	1 cut(s)	425
AoxI	GGCC	1 cut(s)	158
ApoI	RAATTY	3 cut(s)	44, 445, 691
AseI	ATTAAT	1 cut(s)	411
AspLEI	GCGC	1 cut(s)	232
Bbv12I	GWGCWC	2 cut(s)	275, 375
BbvCI	CCTCAGC	2 cut(s)	510, 842
BccI	CCATC	1 cut(s)	776
BciVI	GTATCC	1 cut(s)	923
BclI	TGATCA	1 cut(s)	103
BfaI	CTAG	1 cut(s)	920
BfuI	GTATCC	1 cut(s)	923
BisI	GCNGC	1 cut(s)	158
BlpI	GCTNAGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	159
BmrI	ACTGGG	1 cut(s)	389
BmsI	GCATC	2 cut(s)	180, 667
BmuI	ACTGGG	1 cut(s)	389
BplI	GAGNNNNNCTC	2 cut(s)	357, 389
Bpu10I	CCTNAGC	7 cut(s)	269, 510, 591, 618, 645, 672, 842
Bpu1102I	GCTNAGC	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	183
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bsc4I	CCNNNNNNNGG	3 cut(s)	167, 413, 500
Bse1I	ACTGG	1 cut(s)	395
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	7 cut(s)	28, 520, 553, 574, 601, 682, 940
BseLI	CCNNNNNNNGG	3 cut(s)	167, 413, 500
BseMII	CTCAG	5 cut(s)	233, 260, 461, 501, 833
BseNI	ACTGG	1 cut(s)	395
BseRI	GAGGAG	1 cut(s)	859
Bsh1236I	CGCG	2 cut(s)	230, 807
BshFI	GGCC	1 cut(s)	160
BsiHKAI	GWGCWC	2 cut(s)	275, 375
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	3 cut(s)	167, 413, 500
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	1 cut(s)	160
Bsp1286I	GDGCHC	2 cut(s)	275, 375
Bsp143I	GATC	2 cut(s)	103, 430
Bsp1720I	GCTNAGC	1 cut(s)	219
Bsp68I	TCGCGA	1 cut(s)	807
BspACI	CCGC	2 cut(s)	157, 494
BspANI	GGCC	1 cut(s)	160
BspCNI	CTCAG	5 cut(s)	232, 261, 462, 502, 834
BspFNI	CGCG	2 cut(s)	230, 807
BspHI	TCATGA	1 cut(s)	771
BspPI	GGATC	1 cut(s)	425
BsrI	ACTGG	1 cut(s)	395
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	2 cut(s)	103, 430
BssT1I	CCWWGG	1 cut(s)	183
Bst4CI	ACNGT	2 cut(s)	205, 277
Bst6I	CTCTTC	3 cut(s)	294, 345, 394
BstC8I	GCNNGC	3 cut(s)	155, 169, 216
BstF5I	GGATG	7 cut(s)	28, 520, 553, 574, 601, 682, 940
BstFNI	CGCG	2 cut(s)	230, 807
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	2 cut(s)	106, 433
BstMBI	GATC	2 cut(s)	103, 430
BstMWI	GCNNNNNNNGC	3 cut(s)	220, 229, 677
BstNSI	RCATGY	2 cut(s)	195, 322
BstUI	CGCG	2 cut(s)	230, 807
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
BsuI	GTATCC	1 cut(s)	923
BsuRI	GGCC	1 cut(s)	160
BtsCI	GGATG	7 cut(s)	28, 520, 553, 574, 601, 682, 940
BtsI	GCAGTG	1 cut(s)	251
BtsIMutI	CAGTG	2 cut(s)	251, 456
BtuMI	TCGCGA	1 cut(s)	807
Cac8I	GCNNGC	3 cut(s)	155, 169, 216
CciI	TCATGA	1 cut(s)	771
CfoI	GCGC	1 cut(s)	232
Csp6I	GTAC	1 cut(s)	404
CspCI	CAANNNNNGTGG	2 cut(s)	222, 257
CviAII	CATG	9 cut(s)	192, 211, 319, 435, 500, 544, 772, 796, 827
CviQI	GTAC	1 cut(s)	404
DpnI	GATC	2 cut(s)	105, 432
DpnII	GATC	2 cut(s)	103, 430
Eam1104I	CTCTTC	3 cut(s)	294, 345, 394
EarI	CTCTTC	3 cut(s)	294, 345, 394
Eco130I	CCWWGG	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	318
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	9 cut(s)	195, 214, 322, 438, 503, 547, 775, 799, 830
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	9 cut(s)	191, 210, 318, 434, 499, 543, 771, 795, 826
FauI	CCCGC	1 cut(s)	501
FbaI	TGATCA	1 cut(s)	103
Fnu4HI	GCNGC	1 cut(s)	158
FokI	GGATG	7 cut(s)	35, 527, 560, 581, 608, 689, 927
Fsp4HI	GCNGC	1 cut(s)	158
FspBI	CTAG	1 cut(s)	920
GlaI	GCGC	1 cut(s)	231
GluI	GCNGC	1 cut(s)	158
HaeIII	GGCC	1 cut(s)	160
HhaI	GCGC	1 cut(s)	232
Hin1II	CATG	9 cut(s)	195, 214, 322, 438, 503, 547, 775, 799, 830
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HinfI	GANTC	4 cut(s)	82, 419, 551, 740
Hpy188I	TCNGA	4 cut(s)	103, 316, 471, 929
Hpy188III	TCNNGA	5 cut(s)	268, 289, 555, 772, 806
HpyAV	CCTTC	1 cut(s)	694
HpyCH4III	ACNGT	2 cut(s)	205, 277
HpyCH4V	TGCA	3 cut(s)	214, 244, 249
HpyF10VI	GCNNNNNNNGC	3 cut(s)	220, 229, 677
Hsp92II	CATG	9 cut(s)	195, 214, 322, 438, 503, 547, 775, 799, 830
HspAI	GCGC	1 cut(s)	230
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	2 cut(s)	103, 430
LpnPI	CCDG	9 cut(s)	46, 153, 249, 281, 408, 600, 627, 654, 681
LweI	GCATC	2 cut(s)	180, 667
MaeI	CTAG	1 cut(s)	920
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	2 cut(s)	105, 432
MboI	GATC	2 cut(s)	103, 430
MboII	GAAGA	8 cut(s)	73, 311, 362, 367, 381, 797, 823, 862
MflI	RGATCY	1 cut(s)	430
MhlI	GDGCHC	2 cut(s)	275, 375
MlyI	GAGTC	2 cut(s)	428, 560
MseI	TTAA	4 cut(s)	411, 564, 695, 822
MvnI	CGCG	2 cut(s)	230, 807
MwoI	GCNNNNNNNGC	3 cut(s)	220, 229, 677
NdeII	GATC	2 cut(s)	103, 430
NlaIII	CATG	9 cut(s)	195, 214, 322, 438, 503, 547, 775, 799, 830
NruI	TCGCGA	1 cut(s)	807
NspI	RCATGY	2 cut(s)	195, 322
PagI	TCATGA	1 cut(s)	771
PciI	ACATGT	2 cut(s)	191, 318
PfeI	GAWTC	2 cut(s)	82, 740
PflMI	CCANNNNNTGG	1 cut(s)	413
PkrI	GCNGC	1 cut(s)	159
PleI	GAGTC	2 cut(s)	427, 559
PpsI	GAGTC	2 cut(s)	427, 559
PscI	ACATGT	2 cut(s)	191, 318
PshBI	ATTAAT	1 cut(s)	411
PsiI	TTATAA	1 cut(s)	537
PsuI	RGATCY	1 cut(s)	430
RruI	TCGCGA	1 cut(s)	807
RsaI	GTAC	1 cut(s)	405
RsaNI	GTAC	1 cut(s)	404
SaqAI	TTAA	4 cut(s)	411, 564, 695, 822
SatI	GCNGC	1 cut(s)	158
Sau3AI	GATC	2 cut(s)	103, 430
SchI	GAGTC	2 cut(s)	428, 560
SduI	GDGCHC	2 cut(s)	275, 375
SfaNI	GCATC	2 cut(s)	180, 667
SsiI	CCGC	2 cut(s)	157, 494
SspMI	CTAG	1 cut(s)	920
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	2 cut(s)	205, 277
TaqI	TCGA	3 cut(s)	80, 422, 573
TauI	GCSGC	1 cut(s)	160
TfiI	GAWTC	2 cut(s)	82, 740
Tru1I	TTAA	4 cut(s)	411, 564, 695, 822
Tru9I	TTAA	4 cut(s)	411, 564, 695, 822
TscAI	CASTG	2 cut(s)	251, 456
TspDTI	ATGAA	4 cut(s)	456, 726, 788, 843
TspGWI	ACGGA	1 cut(s)	933
TspRI	CASTG	2 cut(s)	251, 456
Van91I	CCANNNNNTGG	1 cut(s)	413
VspI	ATTAAT	1 cut(s)	411
XapI	RAATTY	3 cut(s)	44, 445, 691
XceI	RCATGY	2 cut(s)	195, 322
XcmI	CCANNNNNNNNNTGG	1 cut(s)	16
XspI	CTAG	1 cut(s)	920

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.