Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0012607

Physical Location & Seq

Genomic Coordinates Forward (+)

29223310 .. 29225130

Gene Structure 1821 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0166700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1821 bp

ATGGCCAATCTTTGGCCTAGCCTGCTTTATGCCTTGGCAATAGCCTTGATAGCCAGCAATGTAGCAGCTAGTTATGAGAAAACATATATATTTGCATCCCCACCACCACCATCATATAAACACAAGTCCCCGCCATCGTATTACTATAAGTCACCACCGCCACCATCTTATAAACACAAGTCATCACCATCATATCATTACAAGTCACCACCGCCACCATCTTATAAACACAAGTCACCACCACCTTATCACTATAAGTCACCACTTCCTCCATCTTATAAACAAAAGTCACCACCACCTTATCACTATAAGTCACCACCTCCTCCATCCTATAAACACAAGTCATCACCATCATATAGTTACAAGTCACCACCACCACCCCAACATTACAAGTCACCAAAATATTACTACAACTCCCCACCTCCTCCTTATGTCTACAAGTCACCTCCACCTCCCTCTCCATCTCCACCCCCTCCATATATTTATAAATCACCTCCTCCACCGTCTCCATCACCTCCTCCTCCTTATGTGTACAAGTCACCACCGCCTCCTTCTCCCTCCCCACCTCCGCCATACATCTATAAATCACCACCACCTCCCTCTCCATCTCCTCCTCCACCATACATTTACAAGTCACCTCCTCCACCTCCTCCTTACATTTATAAATCCCCACCACCTCCATTCTGGTCACCTCCTCCACCATACATTTACAAGTCACCCCCACCACCTCCCCCGTCTCCACCACCTTACATATACAAGTCACCACCACCACCATCTCCATCACCACCTCCTCCTTACCTTTATAAATCACCGCCACCTCCTTCACCATCTCCTCCTCCACCATACATTTACAAGTCACCTCCACCCCCATCTCCACCTCCACCTCCGCCTTACATCTATAAATCACCACCACCACCTTACATTTACAAGTCACCAccaccaccctcgccctcacCTCCTCCACCATACATTTACAAGTCACCCCCACCACCTTCTCCATCACCTCCCCCTCCTTACATTTACAAGTCACCTCCTCCCCCGTCTCCATCGCCTCCACCACCTTACTTATACAAGTCACCACCACCTCCTCCTTACCTTTATAAATCACCGCCACCTCCCTCACCATCTCCTCCTCCACCATACATTTACAAGTCACCTCCATCCCCATCTCCATCTCCACCTCCGCCTTACATCTATAAATCACCACCACCACCCTCTCCATCGCCTCCACCACCTTACATTTATAAGTCACCACCACCACCCTCGCCCTCACCTCCTCCACCATACATTTACAAGTCACCCCCACCACCTTCTCCATCACCTCCCCCTCCTTACATTTACAAGTCACCACCTCCCCTGTCCTCATCGCCTCCACCACCTTACATTTACAAATCACCACCACCTCCATCTCCATCGCCACCTCCTCCTTACATTTATAAATCACCACCTCCACAGTCGCCATCATCTCCACCACCATACATTTACAAGTCACCTCCTCCACCATCTCCATCACCTACCTCTCCTTATGTCTACAAGTCGCCACCGCCACCTTCTCCATCGCCACCCCCTCCTTACATTTATAAATCACCACCGCCACCCTCAAGGTCACCTCCCCCACCTTATCTTTACAAGTCACCACCACCTCCATCTTCATCACCTCCTCCTCCCTACATTTATAAGTCGCCACCACCCCCATCTCTATCCTCACTACCTGGCTACATCTACAAATCTCCACCTCCACCACCTATCCGTTATGTTAAGAAGTCACCACATTCAACATCTACATCTACCCCACCCCCACCATCAACTGTTCATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071944 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

606

Amino Acids

66.15

Weight (kDa)

9.77

Isoelectric Point (pI)

161.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Extensin_2	PF04554	192 - 243	5.3e-06	Extensin-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17100 FvH4_4g17100 FvH4_4g17100
malus_domestica	MD13G1174400.v1.1 MD16G1175900.v1.1
prunus_persica	Prupe.1G142800_v2.0.a1 Prupe.1G142800_v2.0.a1
pyrus_communis	pycom13g15000 pycom16g14740
rosa_chinensis	RchiOBHm_Chr4g0420891
rosa_laevigata	RLG00000007727
rosa_multiflora	Rmu_sc0002006.1_g000007
rosa_roxburghii	Rroxscaffold_5G00363290
rosa_rugosa	Rorug04G0166700
rosa_samantha	Rh4AG228100 Rh4BG231200 Rh4CG243100 Rh4DG226400
rosa_wichuraiana	Rw4G019750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	12
AccI	GTMKAC	2 cut(s)	435, 1530
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	533
AfiI	CCNNNNNNNGG	1 cut(s)	12
AgsI	TTSAA	1 cut(s)	1776
AjnI	CCWGG	1 cut(s)	1711
AluBI	AGCT	1 cut(s)	68
AluI	AGCT	1 cut(s)	68
Alw26I	GTCTC	3 cut(s)	510, 741, 1047
AoxI	GGCC	2 cut(s)	3, 14
ApeKI	GCWGC	1 cut(s)	65
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	77
BciT130I	CCWGG	1 cut(s)	1713
BcoDI	GTCTC	3 cut(s)	510, 741, 1047
BfaI	CTAG	2 cut(s)	18, 69
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
Bme1390I	CCNGG	1 cut(s)	1713
BmrFI	CCNGG	1 cut(s)	1713
BmsI	GCATC	1 cut(s)	104
BpuEI	CTTGAG	1 cut(s)	1585
BsaJI	CCNNGG	1 cut(s)	33
BsaXI	ACNNNNNCTCC	2 cut(s)	398, 428
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
Bse3DI	GCAATG	1 cut(s)	64
BseBI	CCWGG	1 cut(s)	1713
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	3 cut(s)	95, 326, 1160
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseMI	GCAATG	1 cut(s)	64
BseXI	GCAGC	1 cut(s)	77
BshFI	GGCC	2 cut(s)	5, 16
BslFI	GGGAC	1 cut(s)	112
BslI	CCNNNNNNNGG	1 cut(s)	12
BsmAI	GTCTC	3 cut(s)	510, 741, 1047
BsmBI	CGTCTC	3 cut(s)	510, 741, 1047
BsmFI	GGGAC	1 cut(s)	112
BsnI	GGCC	2 cut(s)	5, 16
Bsp1407I	TGTACA	1 cut(s)	531
BspANI	GGCC	2 cut(s)	5, 16
BsrDI	GCAATG	1 cut(s)	64
BsrGI	TGTACA	1 cut(s)	531
BssECI	CCNNGG	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	1713
Bst4CI	ACNGT	3 cut(s)	504, 1455, 1810
BstAUI	TGTACA	1 cut(s)	531
BstC8I	GCNNGC	2 cut(s)	23, 55
BstEII	GGTNACC	2 cut(s)	687, 1605
BstF5I	GGATG	3 cut(s)	95, 326, 1160
BstMAI	GTCTC	3 cut(s)	510, 741, 1047
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 50
BstNI	CCWGG	1 cut(s)	1713
BstPI	GGTNACC	2 cut(s)	687, 1605
BstSCI	CCNGG	1 cut(s)	1711
BstV1I	GCAGC	1 cut(s)	77
BsuRI	GGCC	2 cut(s)	5, 16
BtgZI	GCGATG	5 cut(s)	1032, 1206, 1350, 1398, 1542
BtsCI	GGATG	3 cut(s)	95, 326, 1160
Cac8I	GCNNGC	2 cut(s)	23, 55
Csp6I	GTAC	1 cut(s)	532
CviJI	RGCY	7 cut(s)	5, 16, 21, 44, 53, 68, 1716
CviKI_1	RGCY	7 cut(s)	5, 16, 21, 44, 53, 68, 1716
CviQI	GTAC	1 cut(s)	532
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	3 cut(s)	558, 876, 1173
Eco130I	CCWWGG	1 cut(s)	33
Eco91I	GGTNACC	2 cut(s)	687, 1605
EcoO65I	GGTNACC	2 cut(s)	687, 1605
EcoRII	CCWGG	1 cut(s)	1711
EcoT14I	CCWWGG	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	33
Esp3I	CGTCTC	3 cut(s)	510, 741, 1047
FaqI	GGGAC	1 cut(s)	112
FauI	CCCGC	1 cut(s)	138
FblI	GTMKAC	2 cut(s)	435, 1530
Fnu4HI	GCNGC	1 cut(s)	66
FokI	GGATG	3 cut(s)	82, 313, 1147
Fsp4HI	GCNGC	1 cut(s)	66
FspBI	CTAG	2 cut(s)	18, 69
GluI	GCNGC	1 cut(s)	66
HaeIII	GGCC	2 cut(s)	5, 16
Hpy166II	GTNNAC	3 cut(s)	436, 532, 1531
Hpy8I	GTNNAC	3 cut(s)	436, 532, 1531
HpyAV	CCTTC	5 cut(s)	561, 831, 1002, 1320, 1560
HpyCH4III	ACNGT	3 cut(s)	504, 1455, 1810
HpyCH4V	TGCA	1 cut(s)	95
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 50
LpnPI	CCDG	6 cut(s)	35, 67, 670, 1370, 1698, 1725
Lsp1109I	GCAGC	1 cut(s)	77
LweI	GCATC	1 cut(s)	104
MaeI	CTAG	2 cut(s)	18, 69
MboII	GAAGA	1 cut(s)	1641
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	1758
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	1713
MvaI	CCWGG	1 cut(s)	1713
MwoI	GCNNNNNNNGC	2 cut(s)	22, 50
PflMI	CCANNNNNTGG	1 cut(s)	12
PkrI	GCNGC	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	1711
PspEI	GGTNACC	2 cut(s)	687, 1605
PspGI	CCWGG	1 cut(s)	1711
RsaI	GTAC	1 cut(s)	533
RsaNI	GTAC	1 cut(s)	532
SaqAI	TTAA	1 cut(s)	1758
SatI	GCNGC	1 cut(s)	66
ScrFI	CCNGG	1 cut(s)	1713
SfaNI	GCATC	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	1600
SmoI	CTYRAG	1 cut(s)	1600
SspI	AATATT	1 cut(s)	404
SspMI	CTAG	2 cut(s)	18, 69
StyD4I	CCNGG	1 cut(s)	1711
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	3 cut(s)	504, 1455, 1810
TatI	WGTACW	1 cut(s)	531
Tru1I	TTAA	1 cut(s)	1758
Tru9I	TTAA	1 cut(s)	1758
TseI	GCWGC	1 cut(s)	65
TspDTI	ATGAA	2 cut(s)	1641, 1802
TspGWI	ACGGA	1 cut(s)	1739
Van91I	CCANNNNNTGG	1 cut(s)	12
XcmI	CCANNNNNNNNNTGG	1 cut(s)	681
XmiI	GTMKAC	2 cut(s)	435, 1530
XspI	CTAG	2 cut(s)	18, 69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.