Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0012607

Physical Location & Seq

Genomic Coordinates Forward (+)

39563322 .. 39567699

Gene Structure 4378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG231200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGATTACCACAGAGCTTTTGGATGTTCAACCCAGTGAACTCCAATTCACATTTGAGGTAAAGAAGCAGAGTACATGTTCAATACAACTTGGGAATAGGTCTGACCAGTATGTTGCTTTCAAGGTGAAAACCACTTCTCCAAAGAAATACTGTGTGCGGCCAAATGCAGGCATCATAAAGCCCAAGGCAACATGTGATTTCACAGTTACTATGCAAGCTCAGAAAGTAGCTCCACCTGATTTGCAGTGCAAAGACAAGTTCCTAATCCAATGCACAGTTATTCCATTTGGGACATCAGAGGAGGATGTTACATCTAACATGTTCACAAAAGATAGTGGCAAATACGTTGAAGAGAAGAAGTTAAGAGTGGTGCTCACCAGCCCACCCACTTCTCCAGCATTTCTACCTGTTAATGGGGAATCGAAGCAAGATCTTTGTTATGAAACTTCAGTGGAAAAGGACAGAGTTCCGAATGGAGTTGAAAACATACCTTCACCTCAAAGGGGTGCTGACAATGTTGACGGGTTTGACAGCTATGAGGATATGGATGAGTCAAGAGCAGTTAAGCATGCAGAGGAATTGAAACCAGAAAAGAATGCTGTCGAGTTGAATTTAGCAAAGGATTTTGAGGAGTTGAAATCAAAGCTCCGTACAGTGAATTTAAAGCTAAAAGAGGCTGATCTTACCATCTTTAAGCTAACAGAAGAGAAGAGCATGACCACTCAAGAGAAGAATATGCTAAAACAGGAATTGGAGTTGTTGAGGAAGAAGAACAATGCAAGAAGAATTATGGCTGGGTTCCCTGTTCTTTATGTTTTCTGGTTGCTCTTATCAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071944 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

279

Amino Acids

31.63

Weight (kDa)

6.67

Isoelectric Point (pI)

45.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Motile_Sperm	PF00635	7 - 110	6.5e-31	MSP (Major sperm protein) domain
Cep192_D6	PF22076	7 - 89	5.5e-07	Cep192 domain 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17100 FvH4_4g17100 FvH4_4g17100
malus_domestica	MD13G1174400.v1.1 MD16G1175900.v1.1
prunus_persica	Prupe.1G142800_v2.0.a1 Prupe.1G142800_v2.0.a1
pyrus_communis	pycom13g15000 pycom16g14740
rosa_chinensis	RchiOBHm_Chr4g0420891
rosa_laevigata	RLG00000007727
rosa_multiflora	Rmu_sc0002006.1_g000007
rosa_roxburghii	Rroxscaffold_5G00363290
rosa_rugosa	Rorug04G0166700
rosa_samantha	Rh4AG228100 Rh4BG231200 Rh4CG243100 Rh4DG226400
rosa_wichuraiana	Rw4G019750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	157
AcoI	YGGCCR	1 cut(s)	158
AcsI	RAATTY	2 cut(s)	610, 658
AcuI	CTGAAG	1 cut(s)	432
AfaI	GTAC	2 cut(s)	73, 652
AfiI	CCNNNNNNNGG	3 cut(s)	167, 413, 503
AflIII	ACRYGT	3 cut(s)	74, 191, 318
AgsI	TTSAA	8 cut(s)	29, 81, 121, 350, 482, 583, 610, 637
AluBI	AGCT	7 cut(s)	16, 218, 230, 534, 646, 667, 697
AluI	AGCT	7 cut(s)	16, 218, 230, 534, 646, 667, 697
Alw21I	GWGCWC	1 cut(s)	375
AoxI	GGCC	1 cut(s)	158
ApoI	RAATTY	2 cut(s)	610, 658
AsuHPI	GGTGA	3 cut(s)	136, 367, 486
Bbv12I	GWGCWC	1 cut(s)	375
BccI	CCATC	1 cut(s)	695
BglII	AGATCT	1 cut(s)	430
BisI	GCNGC	1 cut(s)	158
BlsI	GCNGC	1 cut(s)	159
BmiI	GGNNCC	1 cut(s)	800
BmrI	ACTGGG	1 cut(s)	27
BmsI	GCATC	1 cut(s)	180
BmuI	ACTGGG	1 cut(s)	27
BplI	GAGNNNNNCTC	2 cut(s)	357, 389
BpmI	CTGGAG	1 cut(s)	378
BpuEI	CTTGAG	1 cut(s)	708
BsaJI	CCNNGG	1 cut(s)	183
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bsc4I	CCNNNNNNNGG	3 cut(s)	167, 413, 503
Bse1I	ACTGG	2 cut(s)	33, 106
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	3 cut(s)	28, 310, 553
BseLI	CCNNNNNNNGG	3 cut(s)	167, 413, 503
BseMII	CTCAG	1 cut(s)	233
BseNI	ACTGG	2 cut(s)	33, 106
BseRI	GAGGAG	2 cut(s)	314, 644
BseYI	CCCAGC	1 cut(s)	794
BshFI	GGCC	1 cut(s)	160
BsiHKAI	GWGCWC	1 cut(s)	375
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	3 cut(s)	167, 413, 503
BsmFI	GGGAC	1 cut(s)	304
BsmI	GAATGC	1 cut(s)	601
BsnI	GGCC	1 cut(s)	160
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp143I	GATC	2 cut(s)	430, 679
BspACI	CCGC	1 cut(s)	157
BspANI	GGCC	1 cut(s)	160
BspCNI	CTCAG	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	800
BspQI	GCTCTTC	1 cut(s)	704
BsrI	ACTGG	2 cut(s)	33, 106
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	2 cut(s)	430, 679
BssT1I	CCWWGG	1 cut(s)	183
Bst4CI	ACNGT	4 cut(s)	152, 205, 277, 655
Bst6I	CTCTTC	3 cut(s)	345, 699, 704
BstC8I	GCNNGC	3 cut(s)	169, 216, 570
BstDEI	CTNAG	1 cut(s)	219
BstF5I	GGATG	3 cut(s)	28, 310, 553
BstKTI	GATC	2 cut(s)	433, 682
BstMBI	GATC	2 cut(s)	430, 679
BstNSI	RCATGY	4 cut(s)	78, 195, 322, 572
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
BsuRI	GGCC	1 cut(s)	160
BtsCI	GGATG	3 cut(s)	28, 310, 553
BtsI	GCAGTG	1 cut(s)	251
BtsIMutI	CAGTG	4 cut(s)	40, 251, 456, 660
Cac8I	GCNNGC	3 cut(s)	169, 216, 570
Csp6I	GTAC	2 cut(s)	72, 651
CspCI	CAANNNNNGTGG	2 cut(s)	222, 257
CviAII	CATG	5 cut(s)	75, 192, 319, 569, 715
CviQI	GTAC	2 cut(s)	72, 651
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	2 cut(s)	432, 681
DpnII	GATC	2 cut(s)	430, 679
DraI	TTTAAA	1 cut(s)	663
EaeI	YGGCCR	1 cut(s)	158
Eam1104I	CTCTTC	3 cut(s)	345, 699, 704
EarI	CTCTTC	3 cut(s)	345, 699, 704
Eco130I	CCWWGG	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	432
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	5 cut(s)	78, 195, 322, 572, 718
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	5 cut(s)	74, 191, 318, 568, 714
Fnu4HI	GCNGC	1 cut(s)	158
FokI	GGATG	3 cut(s)	35, 317, 560
Fsp4HI	GCNGC	1 cut(s)	158
GluI	GCNGC	1 cut(s)	158
GsaI	CCCAGC	1 cut(s)	798
GsuI	CTGGAG	1 cut(s)	378
HaeIII	GGCC	1 cut(s)	160
Hin1II	CATG	5 cut(s)	78, 195, 322, 572, 718
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HinfI	GANTC	2 cut(s)	419, 551
HphI	GGTGA	3 cut(s)	136, 367, 486
Hpy166II	GTNNAC	3 cut(s)	38, 324, 520
Hpy188I	TCNGA	4 cut(s)	103, 222, 298, 471
Hpy188III	TCNNGA	2 cut(s)	555, 725
Hpy8I	GTNNAC	3 cut(s)	38, 324, 520
HpyAV	CCTTC	1 cut(s)	501
HpyCH4III	ACNGT	4 cut(s)	152, 205, 277, 655
HpyCH4IV	ACGT	1 cut(s)	345
HpyCH4V	TGCA	7 cut(s)	167, 214, 244, 249, 273, 572, 779
HpyF3I	CTNAG	1 cut(s)	219
HpySE526I	ACGT	1 cut(s)	345
Hsp92II	CATG	5 cut(s)	78, 195, 322, 572, 718
Kzo9I	GATC	2 cut(s)	430, 679
LguI	GCTCTTC	1 cut(s)	704
LmnI	GCTCC	2 cut(s)	235, 651
LweI	GCATC	1 cut(s)	180
MaeII	ACGT	1 cut(s)	345
MaeIII	GTNAC	2 cut(s)	205, 307
MalI	GATC	2 cut(s)	432, 681
MboI	GATC	2 cut(s)	430, 679
MboII	GAAGA	8 cut(s)	362, 367, 716, 721, 742, 778, 781, 795
MflI	RGATCY	1 cut(s)	430
MhlI	GDGCHC	1 cut(s)	375
MluCI	AATT	6 cut(s)	44, 578, 610, 658, 749, 786
MlyI	GAGTC	1 cut(s)	560
MnlI	CCTC	9 cut(s)	49, 292, 295, 507, 532, 568, 622, 667, 756
MseI	TTAA	5 cut(s)	362, 411, 564, 662, 693
Mva1269I	GAATGC	1 cut(s)	601
NdeII	GATC	2 cut(s)	430, 679
NlaIII	CATG	5 cut(s)	78, 195, 322, 572, 718
NlaIV	GGNNCC	1 cut(s)	800
NspI	RCATGY	4 cut(s)	78, 195, 322, 572
PaeI	GCATGC	1 cut(s)	572
PciI	ACATGT	3 cut(s)	74, 191, 318
PciSI	GCTCTTC	1 cut(s)	704
PctI	GAATGC	1 cut(s)	601
PfeI	GAWTC	1 cut(s)	419
PkrI	GCNGC	1 cut(s)	159
PleI	GAGTC	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	559
PscI	ACATGT	3 cut(s)	74, 191, 318
PspFI	CCCAGC	1 cut(s)	794
PspN4I	GGNNCC	1 cut(s)	800
PsuI	RGATCY	1 cut(s)	430
RsaI	GTAC	2 cut(s)	73, 652
RsaNI	GTAC	2 cut(s)	72, 651
SapI	GCTCTTC	1 cut(s)	704
SaqAI	TTAA	5 cut(s)	362, 411, 564, 662, 693
SatI	GCNGC	1 cut(s)	158
Sau3AI	GATC	2 cut(s)	430, 679
SchI	GAGTC	1 cut(s)	560
SduI	GDGCHC	1 cut(s)	375
SfaNI	GCATC	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	723
SmoI	CTYRAG	1 cut(s)	723
SphI	GCATGC	1 cut(s)	572
Sse9I	AATT	6 cut(s)	44, 578, 610, 658, 749, 786
SsiI	CCGC	1 cut(s)	157
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	4 cut(s)	152, 205, 277, 655
TaiI	ACGT	1 cut(s)	348
TaqI	TCGA	2 cut(s)	422, 603
TasI	AATT	6 cut(s)	44, 578, 610, 658, 749, 786
TatI	WGTACW	1 cut(s)	71
TauI	GCSGC	1 cut(s)	160
TfiI	GAWTC	1 cut(s)	419
Tru1I	TTAA	5 cut(s)	362, 411, 564, 662, 693
Tru9I	TTAA	5 cut(s)	362, 411, 564, 662, 693
TscAI	CASTG	4 cut(s)	40, 251, 456, 660
TspDTI	ATGAA	1 cut(s)	456
TspGWI	ACGGA	1 cut(s)	638
TspRI	CASTG	4 cut(s)	40, 251, 456, 660
XapI	RAATTY	2 cut(s)	610, 658
XceI	RCATGY	4 cut(s)	78, 195, 322, 572
XcmI	CCANNNNNNNNNTGG	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.