Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0012607

Physical Location & Seq

Genomic Coordinates Reverse (-)

10901704 .. 10904678

Gene Structure 2975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g15000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGACGACGCCGCCAGAGCTTCTGGAAGTTCATCCCCGCGAGCTCAAATTCACATTTGAAGTGAAGAAGCAGAGTACGTGCTCGATTCAACTCGGAAACAGGTCCGACCACTATGTTGCTTTCAAGGTGAAAACCACTTCCCCGAAGAAATATTGTGTGCGGCCGAATGCAGGCATTGTAAAACCCAAGACAACGTGTGATTTTACAGTTACTATGCAAGCTCAGCGTGTTGCTCCACCTGATTTGCAGTGCAAAGACAAGTTCCTAATACAGTGCACTGTTATTCCATTTGGGACAACTGAACAGGAGATAACATCCGAGATGTTTTCAAAAGGTAGTGGACGAAACATTGAAGAAAGGAAGCTAAAAGTGTTGCTCATTAGCCCACCCCCGTCCCCAGTATTTGTACCAATTAATGGGGAGTCGAAGCAAGATCCATGCTATGAAACATCGGTGAAAAAGGATAGAGTTCTGACTGAAGTTGAAAACATACCTCCGAGTCATAGGGTTGCTGAGGATGTTGACGTGTTTGAAACTTGTAAGGACATGGATGAGTCAAGAGCAGTTAAGGATGTGGTGGCATCGAAACCAGCTAAGGATGCGCAGGAATTGAAACCAGATAAGGATGTGGAGGAATCAAAACCAGCTAAGTATATGAAGGAACTGAAACCAGTGAAAAATATGGAGGAACCAAATCCAACGAAAGATATGGAGGAATCGAAACCAGCCAAGGATATGGAGGAATTGAAACCAGCTAGGGGTGCTGCAGTATTGAATTTAACAAAGGATTTTGAGGAACTGAAATCAAAGCTAAATACGGTGGATTCAAAGCTAAAAGAGGCTGAACTCACCGTCACGAAGTTAACTGAAGAGAGTAGCAGGTCCACTCGAGAGAAGAATATGCTTAAACATGAATTGGAGTCATTGAGGAGGAGGAAGAACAATTTAAAAAGGGTTACGGTTGGCTTCCCTCTCTTTCATGTTTGTATGGTTGCCCTTATCAGTCTAGCATTCGGATACTACATCCATCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071944 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

345

Amino Acids

39.01

Weight (kDa)

8.59

Isoelectric Point (pI)

49.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Motile_Sperm	PF00635	8 - 113	8.8e-31	MSP (Major sperm protein) domain
Cep192_D6	PF22076	8 - 89	1.8e-06	Cep192 domain 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17100 FvH4_4g17100 FvH4_4g17100
malus_domestica	MD13G1174400.v1.1 MD16G1175900.v1.1
prunus_persica	Prupe.1G142800_v2.0.a1 Prupe.1G142800_v2.0.a1
pyrus_communis	pycom13g15000 pycom16g14740
rosa_chinensis	RchiOBHm_Chr4g0420891
rosa_laevigata	RLG00000007727
rosa_multiflora	Rmu_sc0002006.1_g000007
rosa_roxburghii	Rroxscaffold_5G00363290
rosa_rugosa	Rorug04G0166700
rosa_samantha	Rh4AG228100 Rh4BG231200 Rh4CG243100 Rh4DG226400
rosa_wichuraiana	Rw4G019750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	603
Acc36I	ACCTGC	1 cut(s)	870
AccB7I	CCANNNNNTGG	1 cut(s)	416
AccII	CGCG	1 cut(s)	39
AciI	CCGC	3 cut(s)	11, 37, 160
AclWI	GGATC	1 cut(s)	428
AcoI	YGGCCR	1 cut(s)	161
AcsI	RAATTY	2 cut(s)	47, 775
AcuI	CTGAAG	2 cut(s)	498, 888
AcyI	GRCGYC	1 cut(s)	8
AfaI	GTAC	2 cut(s)	76, 408
AfiI	CCNNNNNNNGG	3 cut(s)	170, 416, 758
AflIII	ACRYGT	2 cut(s)	194, 525
AjiI	CACGTC	1 cut(s)	526
AluBI	AGCT	9 cut(s)	19, 43, 221, 364, 593, 647, 755, 811, 832
AluI	AGCT	9 cut(s)	19, 43, 221, 364, 593, 647, 755, 811, 832
Alw21I	GWGCWC	3 cut(s)	45, 83, 278
Alw44I	GTGCAC	1 cut(s)	274
AlwI	GGATC	1 cut(s)	428
Ama87I	CYCGRG	1 cut(s)	888
AoxI	GGCC	1 cut(s)	161
ApaLI	GTGCAC	1 cut(s)	274
ApeKI	GCWGC	1 cut(s)	764
ApoI	RAATTY	2 cut(s)	47, 775
AseI	ATTAAT	1 cut(s)	414
AspLEI	GCGC	1 cut(s)	604
AspS9I	GGNCC	2 cut(s)	102, 882
AsuHPI	GGTGA	3 cut(s)	139, 466, 841
AvaI	CYCGRG	1 cut(s)	888
AvaII	GGWCC	2 cut(s)	102, 882
BaeGI	GKGCMC	1 cut(s)	278
BanII	GRGCYC	1 cut(s)	45
Bbv12I	GWGCWC	3 cut(s)	45, 83, 278
BbvCI	CCTCAGC	1 cut(s)	513
BbvI	GCAGC	1 cut(s)	751
BciVI	GTATCC	1 cut(s)	1010
BfaI	CTAG	2 cut(s)	756, 1007
BfmI	CTRYAG	1 cut(s)	765
BfuAI	ACCTGC	1 cut(s)	870
BfuI	GTATCC	1 cut(s)	1010
BisI	GCNGC	3 cut(s)	11, 161, 765
BlpI	GCTNAGC	1 cut(s)	222
BlsI	GCNGC	3 cut(s)	12, 162, 766
Bme18I	GGWCC	2 cut(s)	102, 882
BmeT110I	CYCGRG	1 cut(s)	888
BmgBI	CACGTC	1 cut(s)	526
BmgT120I	GGNCC	2 cut(s)	102, 882
BmiI	GGNNCC	1 cut(s)	690
BmrI	ACTGGG	1 cut(s)	392
BmsI	GCATC	2 cut(s)	589, 590
BmuI	ACTGGG	1 cut(s)	392
Bpu10I	CCTNAGC	2 cut(s)	513, 594
Bpu1102I	GCTNAGC	1 cut(s)	222
BsaAI	YACGTR	1 cut(s)	78
BsaHI	GRCGYC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	729
Bsc4I	CCNNNNNNNGG	3 cut(s)	170, 416, 758
Bse1I	ACTGG	2 cut(s)	398, 671
BseDI	CCNNGG	1 cut(s)	729
BseGI	GGATG	9 cut(s)	31, 314, 523, 556, 577, 604, 631, 1023, 1027
BseLI	CCNNNNNNNGG	3 cut(s)	170, 416, 758
BseMII	CTCAG	2 cut(s)	236, 504
BseNI	ACTGG	2 cut(s)	398, 671
BseRI	GAGGAG	2 cut(s)	943, 946
BseSI	GKGCMC	1 cut(s)	278
BseX3I	CGGCCG	1 cut(s)	161
BseXI	GCAGC	1 cut(s)	751
Bsh1236I	CGCG	1 cut(s)	39
Bsh1285I	CGRYCG	1 cut(s)	164
BshFI	GGCC	1 cut(s)	163
BsiEI	CGRYCG	1 cut(s)	164
BsiHKAI	GWGCWC	3 cut(s)	45, 83, 278
BsiHKCI	CYCGRG	1 cut(s)	888
BslFI	GGGAC	2 cut(s)	307, 379
BslI	CCNNNNNNNGG	3 cut(s)	170, 416, 758
BsmFI	GGGAC	2 cut(s)	307, 379
BsmI	GAATGC	2 cut(s)	172, 1010
BsnI	GGCC	1 cut(s)	163
BsoBI	CYCGRG	1 cut(s)	888
Bsp1286I	GDGCHC	3 cut(s)	45, 83, 278
Bsp143I	GATC	1 cut(s)	433
Bsp1720I	GCTNAGC	1 cut(s)	222
BspACI	CCGC	3 cut(s)	11, 37, 160
BspANI	GGCC	1 cut(s)	163
BspCNI	CTCAG	2 cut(s)	235, 505
BspFNI	CGCG	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	690
BspMAI	CTGCAG	1 cut(s)	769
BspMI	ACCTGC	1 cut(s)	870
BspPI	GGATC	1 cut(s)	428
BsrI	ACTGG	2 cut(s)	398, 671
BssECI	CCNNGG	1 cut(s)	729
BssMI	GATC	1 cut(s)	433
BssNI	GRCGYC	1 cut(s)	8
BssT1I	CCWWGG	1 cut(s)	729
Bst4CI	ACNGT	6 cut(s)	208, 273, 280, 820, 853, 961
Bst6I	CTCTTC	1 cut(s)	864
BstACI	GRCGYC	1 cut(s)	8
BstBAI	YACGTR	1 cut(s)	78
BstC8I	GCNNGC	3 cut(s)	41, 172, 219
BstDEI	CTNAG	4 cut(s)	222, 513, 594, 648
BstF5I	GGATG	9 cut(s)	31, 314, 523, 556, 577, 604, 631, 1023, 1027
BstFNI	CGCG	1 cut(s)	39
BstHHI	GCGC	1 cut(s)	604
BstKTI	GATC	1 cut(s)	436
BstMBI	GATC	1 cut(s)	433
BstMCI	CGRYCG	1 cut(s)	164
BstMWI	GCNNNNNNNGC	4 cut(s)	16, 223, 599, 761
BstSFI	CTRYAG	1 cut(s)	765
BstSLI	GKGCMC	1 cut(s)	278
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	751
BstX2I	RGATCY	1 cut(s)	433
BstXI	CCANNNNNNTGG	1 cut(s)	736
BstYI	RGATCY	1 cut(s)	433
BstZI	CGGCCG	1 cut(s)	161
BsuI	GTATCC	1 cut(s)	1010
BsuRI	GGCC	1 cut(s)	163
BtrI	CACGTC	1 cut(s)	526
BtsCI	GGATG	9 cut(s)	31, 314, 523, 556, 577, 604, 631, 1023, 1027
BtsI	GCAGTG	1 cut(s)	254
BtsIMutI	CAGTG	4 cut(s)	254, 276, 278, 678
BveI	ACCTGC	1 cut(s)	870
Cac8I	GCNNGC	3 cut(s)	41, 172, 219
CfoI	GCGC	1 cut(s)	604
Cfr13I	GGNCC	2 cut(s)	102, 882
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	2 cut(s)	75, 407
CspCI	CAANNNNNGTGG	2 cut(s)	225, 260
CviAII	CATG	4 cut(s)	438, 547, 911, 980
CviQI	GTAC	2 cut(s)	75, 407
DdeI	CTNAG	4 cut(s)	222, 513, 594, 648
DpnI	GATC	1 cut(s)	435
DpnII	GATC	1 cut(s)	433
DraI	TTTAAA	1 cut(s)	948
EaeI	YGGCCR	1 cut(s)	161
EagI	CGGCCG	1 cut(s)	161
Eam1104I	CTCTTC	1 cut(s)	864
EarI	CTCTTC	1 cut(s)	864
Ecl136II	GAGCTC	1 cut(s)	43
EclXI	CGGCCG	1 cut(s)	161
Eco130I	CCWWGG	1 cut(s)	729
Eco24I	GRGCYC	1 cut(s)	45
Eco47I	GGWCC	2 cut(s)	102, 882
Eco52I	CGGCCG	1 cut(s)	161
Eco53kI	GAGCTC	1 cut(s)	43
Eco57I	CTGAAG	2 cut(s)	498, 888
Eco88I	CYCGRG	1 cut(s)	888
EcoICRI	GAGCTC	1 cut(s)	43
EcoT14I	CCWWGG	1 cut(s)	729
EcoT38I	GRGCYC	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	729
FaeI	CATG	4 cut(s)	441, 550, 914, 983
FaqI	GGGAC	2 cut(s)	307, 379
FatI	CATG	4 cut(s)	437, 546, 910, 979
FauI	CCCGC	1 cut(s)	44
Fnu4HI	GCNGC	3 cut(s)	11, 161, 765
FokI	GGATG	9 cut(s)	18, 301, 530, 563, 584, 611, 638, 1010, 1014
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	3 cut(s)	11, 161, 765
FspBI	CTAG	2 cut(s)	756, 1007
FspI	TGCGCA	1 cut(s)	603
GlaI	GCGC	1 cut(s)	603
GluI	GCNGC	3 cut(s)	11, 161, 765
HaeIII	GGCC	1 cut(s)	163
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	1 cut(s)	604
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	4 cut(s)	441, 550, 914, 983
Hin6I	GCGC	1 cut(s)	602
HinP1I	GCGC	1 cut(s)	602
HincII	GTYRAC	2 cut(s)	523, 864
HindII	GTYRAC	2 cut(s)	523, 864
HinfI	GANTC	8 cut(s)	85, 422, 499, 554, 635, 716, 824, 920
HpaI	GTTAAC	1 cut(s)	864
HphI	GGTGA	3 cut(s)	139, 466, 841
Hpy166II	GTNNAC	5 cut(s)	276, 341, 523, 864, 885
Hpy188I	TCNGA	6 cut(s)	95, 106, 319, 474, 498, 1016
Hpy188III	TCNNGA	4 cut(s)	23, 558, 856, 890
Hpy8I	GTNNAC	5 cut(s)	276, 341, 523, 864, 885
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	652
HpyCH4III	ACNGT	6 cut(s)	208, 273, 280, 820, 853, 961
HpyCH4IV	ACGT	3 cut(s)	77, 194, 525
HpyCH4V	TGCA	6 cut(s)	170, 217, 247, 252, 276, 767
HpyF10VI	GCNNNNNNNGC	4 cut(s)	16, 223, 599, 761
HpyF3I	CTNAG	4 cut(s)	222, 513, 594, 648
HpySE526I	ACGT	3 cut(s)	77, 194, 525
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	4 cut(s)	441, 550, 914, 983
HspAI	GCGC	1 cut(s)	602
KspAI	GTTAAC	1 cut(s)	864
Kzo9I	GATC	1 cut(s)	433
LmnI	GCTCC	1 cut(s)	238
Lsp1109I	GCAGC	1 cut(s)	751
LweI	GCATC	2 cut(s)	589, 590
MaeI	CTAG	2 cut(s)	756, 1007
MaeII	ACGT	3 cut(s)	77, 194, 525
MaeIII	GTNAC	3 cut(s)	208, 853, 955
MalI	GATC	1 cut(s)	435
MboI	GATC	1 cut(s)	433
MboII	GAAGA	6 cut(s)	76, 157, 365, 881, 907, 949
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	3 cut(s)	45, 83, 278
MluCI	AATT	7 cut(s)	47, 411, 608, 743, 775, 914, 943
MlyI	GAGTC	4 cut(s)	431, 508, 563, 929
MmeI	TCCRAC	2 cut(s)	129, 722
MseI	TTAA	6 cut(s)	414, 567, 779, 863, 906, 947
Mva1269I	GAATGC	2 cut(s)	172, 1010
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	4 cut(s)	16, 223, 599, 761
NdeII	GATC	1 cut(s)	433
NlaIII	CATG	4 cut(s)	441, 550, 914, 983
NlaIV	GGNNCC	1 cut(s)	690
NmuCI	GTSAC	1 cut(s)	853
NsbI	TGCGCA	1 cut(s)	603
PaeR7I	CTCGAG	1 cut(s)	888
PctI	GAATGC	2 cut(s)	172, 1010
PfeI	GAWTC	4 cut(s)	85, 635, 716, 824
PflMI	CCANNNNNTGG	1 cut(s)	416
PkrI	GCNGC	3 cut(s)	12, 162, 766
PleI	GAGTC	4 cut(s)	430, 507, 562, 928
PpsI	GAGTC	4 cut(s)	430, 507, 562, 928
Ppu21I	YACGTR	1 cut(s)	78
PshBI	ATTAAT	1 cut(s)	414
Psp124BI	GAGCTC	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	690
PspPI	GGNCC	2 cut(s)	102, 882
PstI	CTGCAG	1 cut(s)	769
PsuI	RGATCY	1 cut(s)	433
RsaI	GTAC	2 cut(s)	76, 408
RsaNI	GTAC	2 cut(s)	75, 407
SacI	GAGCTC	1 cut(s)	45
SaqAI	TTAA	6 cut(s)	414, 567, 779, 863, 906, 947
SatI	GCNGC	3 cut(s)	11, 161, 765
Sau3AI	GATC	1 cut(s)	433
Sau96I	GGNCC	2 cut(s)	102, 882
SchI	GAGTC	4 cut(s)	431, 508, 563, 929
SduI	GDGCHC	3 cut(s)	45, 83, 278
SfaNI	GCATC	2 cut(s)	589, 590
SfcI	CTRYAG	1 cut(s)	765
Sfr274I	CTCGAG	1 cut(s)	888
SinI	GGWCC	2 cut(s)	102, 882
SlaI	CTCGAG	1 cut(s)	888
SmlI	CTYRAG	1 cut(s)	888
SmoI	CTYRAG	1 cut(s)	888
Sse9I	AATT	7 cut(s)	47, 411, 608, 743, 775, 914, 943
SsiI	CCGC	3 cut(s)	11, 37, 160
SspI	AATATT	1 cut(s)	152
SspMI	CTAG	2 cut(s)	756, 1007
SstI	GAGCTC	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	729
TaaI	ACNGT	6 cut(s)	208, 273, 280, 820, 853, 961
TaiI	ACGT	3 cut(s)	80, 197, 528
TaqI	TCGA	5 cut(s)	83, 425, 584, 719, 889
TasI	AATT	7 cut(s)	47, 411, 608, 743, 775, 914, 943
TauI	GCSGC	2 cut(s)	13, 163
TfiI	GAWTC	4 cut(s)	85, 635, 716, 824
Tru1I	TTAA	6 cut(s)	414, 567, 779, 863, 906, 947
Tru9I	TTAA	6 cut(s)	414, 567, 779, 863, 906, 947
TscAI	CASTG	4 cut(s)	254, 278, 283, 678
TseFI	GTSAC	1 cut(s)	853
TseI	GCWGC	1 cut(s)	764
Tsp45I	GTSAC	1 cut(s)	853
TspDTI	ATGAA	5 cut(s)	20, 459, 671, 927, 968
TspGWI	ACGGA	1 cut(s)	1020
TspRI	CASTG	4 cut(s)	254, 278, 283, 678
Van91I	CCANNNNNTGG	1 cut(s)	416
VneI	GTGCAC	1 cut(s)	274
VpaK11BI	GGWCC	2 cut(s)	102, 882
VspI	ATTAAT	1 cut(s)	414
XapI	RAATTY	2 cut(s)	47, 775
XhoI	CTCGAG	1 cut(s)	888
XspI	CTAG	2 cut(s)	756, 1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.