Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0012607

Physical Location & Seq

Genomic Coordinates Forward (+)

44447614 .. 44452397

Gene Structure 4784 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00363290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGATCACCACAGAGCTTTTGGATGTTCAACCCAGTGAACTCCAATTCACATTTGAGGTAAAGAAGCAGAGTACATGTTCAATACAACTTGGGAATAGGTCTGACCAGTATGTTGCTTTCAAGGTGAAGACCACTTCTCCAAAGAAATACTGTGTGCGGCCAAATGCAGGCATCATAAAGCCCAAGGCAACATATGATTTCACAGTTACTATGCAAGCTCAGAAAGTAGCTCCACCTGATTTGCAGTGCAAAGACAAGTTCCTAATCCAATGCACAGTTATTCCATTTGGGATATCAGAGGAGGATGTTACATCTAGCATGTTCGCAAAAGATAGTGGCAAATACGTTGAAGAGAAGAAGTTAAGAGTGGTGCTCACCTGCCCACCCACTTCTCCAGCATTTCTACCTGTTAATGGGGAGTTGAAGCAAGATCTTTGTTATGAAACTTCAGTGGAAAAGGACAGAGTTCCGAATGGAGTTGAAAACATACCTTCACCTCAAAGGAAATGTGCATTAGCTACTGTTGTTGGGAGAAAAATTGTCATCTCTATGTCAGTAGAAGGTGCTGACAATGTTGACGGGTTTGACAGCTATGAGGATATGGATGAGTCAAGAGCAGTTAAGCATGCAGAGGAATTGAAACCAGAAAAGAATGCTGTCGAGTTGAATTTAGCAAAGGATTTTGAGGAGTTGAAATCAAAGCTCAGGACAGTGAATTTAAAGCTAAAAGAGGCTGATCTTACCATCATTAAGCTAACAGAAGAGAAGAGCATGACCACTCAAGAGAAGAATATGCTAAAACAGGAATTGGAGTTGTTGAGGAAGAAGAACAATGCAAGAAGAATTATGGTTGGGTTCCCTGTTCTTTATGTTTTTCTGGTTGCTCTTATCAGTATAGCAATCGGATACTTTGCCCATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071944 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

307

Amino Acids

34.52

Weight (kDa)

8.03

Isoelectric Point (pI)

40.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Motile_Sperm	PF00635	7 - 110	6.4e-30	MSP (Major sperm protein) domain
Cep192_D6	PF22076	7 - 88	7.3e-07	Cep192 domain 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17100 FvH4_4g17100 FvH4_4g17100
malus_domestica	MD13G1174400.v1.1 MD16G1175900.v1.1
prunus_persica	Prupe.1G142800_v2.0.a1 Prupe.1G142800_v2.0.a1
pyrus_communis	pycom13g15000 pycom16g14740
rosa_chinensis	RchiOBHm_Chr4g0420891
rosa_laevigata	RLG00000007727
rosa_multiflora	Rmu_sc0002006.1_g000007
rosa_roxburghii	Rroxscaffold_5G00363290
rosa_rugosa	Rorug04G0166700
rosa_samantha	Rh4AG228100 Rh4BG231200 Rh4CG243100 Rh4DG226400
rosa_wichuraiana	Rw4G019750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	386
Acc36I	ACCTGC	1 cut(s)	386
AciI	CCGC	1 cut(s)	157
AcoI	YGGCCR	1 cut(s)	158
AcsI	RAATTY	2 cut(s)	667, 715
AcuI	CTGAAG	1 cut(s)	432
AfaI	GTAC	1 cut(s)	73
AfiI	CCNNNNNNNGG	2 cut(s)	167, 413
AflIII	ACRYGT	1 cut(s)	74
AgsI	TTSAA	9 cut(s)	29, 81, 121, 350, 424, 482, 640, 667, 694
AluBI	AGCT	8 cut(s)	16, 218, 230, 518, 591, 703, 724, 754
AluI	AGCT	8 cut(s)	16, 218, 230, 518, 591, 703, 724, 754
Alw21I	GWGCWC	1 cut(s)	375
AoxI	GGCC	1 cut(s)	158
ApoI	RAATTY	2 cut(s)	667, 715
AsuHPI	GGTGA	3 cut(s)	136, 367, 486
BbsI	GAAGAC	1 cut(s)	134
Bbv12I	GWGCWC	1 cut(s)	375
BccI	CCATC	1 cut(s)	752
BciVI	GTATCC	1 cut(s)	899
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	1 cut(s)	315
BfuAI	ACCTGC	1 cut(s)	386
BfuI	GTATCC	1 cut(s)	899
BglII	AGATCT	1 cut(s)	430
BisI	GCNGC	1 cut(s)	158
BlsI	GCNGC	1 cut(s)	159
BmiI	GGNNCC	1 cut(s)	857
BmrI	ACTGGG	1 cut(s)	27
BmsI	GCATC	1 cut(s)	180
BmuI	ACTGGG	1 cut(s)	27
BpiI	GAAGAC	1 cut(s)	134
BplI	GAGNNNNNCTC	2 cut(s)	357, 389
BpmI	CTGGAG	1 cut(s)	378
Bpu10I	CCTNAGC	1 cut(s)	704
BpuEI	CTTGAG	1 cut(s)	765
BsaJI	CCNNGG	1 cut(s)	183
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 413
Bse1I	ACTGG	2 cut(s)	33, 106
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	4 cut(s)	28, 310, 610, 916
BseLI	CCNNNNNNNGG	2 cut(s)	167, 413
BseMII	CTCAG	2 cut(s)	233, 718
BseNI	ACTGG	2 cut(s)	33, 106
BseRI	GAGGAG	2 cut(s)	314, 701
BshFI	GGCC	1 cut(s)	160
BsiHKAI	GWGCWC	1 cut(s)	375
BslI	CCNNNNNNNGG	2 cut(s)	167, 413
BsmI	GAATGC	1 cut(s)	658
BsnI	GGCC	1 cut(s)	160
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp143I	GATC	3 cut(s)	3, 430, 736
BspACI	CCGC	1 cut(s)	157
BspANI	GGCC	1 cut(s)	160
BspCNI	CTCAG	2 cut(s)	232, 717
BspLI	GGNNCC	1 cut(s)	857
BspMI	ACCTGC	1 cut(s)	386
BspQI	GCTCTTC	1 cut(s)	761
BsrI	ACTGG	2 cut(s)	33, 106
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	3 cut(s)	3, 430, 736
BssT1I	CCWWGG	1 cut(s)	183
Bst4CI	ACNGT	5 cut(s)	152, 205, 277, 523, 712
Bst6I	CTCTTC	3 cut(s)	345, 756, 761
BstC8I	GCNNGC	3 cut(s)	169, 216, 627
BstDEI	CTNAG	3 cut(s)	219, 704, 921
BstF5I	GGATG	4 cut(s)	28, 310, 610, 916
BstKTI	GATC	3 cut(s)	6, 433, 739
BstMBI	GATC	3 cut(s)	3, 430, 736
BstNSI	RCATGY	3 cut(s)	78, 322, 629
BstV2I	GAAGAC	1 cut(s)	134
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
BsuI	GTATCC	1 cut(s)	899
BsuRI	GGCC	1 cut(s)	160
BtsCI	GGATG	4 cut(s)	28, 310, 610, 916
BtsI	GCAGTG	1 cut(s)	251
BtsIMutI	CAGTG	4 cut(s)	40, 251, 456, 717
BveI	ACCTGC	1 cut(s)	386
Cac8I	GCNNGC	3 cut(s)	169, 216, 627
Csp6I	GTAC	1 cut(s)	72
CspCI	CAANNNNNGTGG	2 cut(s)	222, 257
CviAII	CATG	4 cut(s)	75, 319, 626, 772
CviQI	GTAC	1 cut(s)	72
DdeI	CTNAG	3 cut(s)	219, 704, 921
DpnI	GATC	3 cut(s)	5, 432, 738
DpnII	GATC	3 cut(s)	3, 430, 736
DraI	TTTAAA	1 cut(s)	720
EaeI	YGGCCR	1 cut(s)	158
Eam1104I	CTCTTC	3 cut(s)	345, 756, 761
EarI	CTCTTC	3 cut(s)	345, 756, 761
Eco130I	CCWWGG	1 cut(s)	183
Eco32I	GATATC	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	432
EcoRV	GATATC	1 cut(s)	294
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	4 cut(s)	78, 322, 629, 775
FatI	CATG	4 cut(s)	74, 318, 625, 771
FauNDI	CATATG	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	158
FokI	GGATG	4 cut(s)	35, 317, 617, 903
Fsp4HI	GCNGC	1 cut(s)	158
FspBI	CTAG	1 cut(s)	315
GluI	GCNGC	1 cut(s)	158
GsuI	CTGGAG	1 cut(s)	378
HaeIII	GGCC	1 cut(s)	160
Hin1II	CATG	4 cut(s)	78, 322, 629, 775
HincII	GTYRAC	1 cut(s)	577
HindII	GTYRAC	1 cut(s)	577
HinfI	GANTC	1 cut(s)	608
HphI	GGTGA	3 cut(s)	136, 367, 486
Hpy166II	GTNNAC	2 cut(s)	38, 577
Hpy188I	TCNGA	5 cut(s)	103, 222, 298, 471, 905
Hpy188III	TCNNGA	3 cut(s)	612, 706, 782
Hpy8I	GTNNAC	2 cut(s)	38, 577
HpyAV	CCTTC	2 cut(s)	501, 554
HpyCH4III	ACNGT	5 cut(s)	152, 205, 277, 523, 712
HpyCH4IV	ACGT	1 cut(s)	345
HpyCH4V	TGCA	8 cut(s)	167, 214, 244, 249, 273, 512, 629, 836
HpyF3I	CTNAG	3 cut(s)	219, 704, 921
HpySE526I	ACGT	1 cut(s)	345
Hsp92II	CATG	4 cut(s)	78, 322, 629, 775
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 430, 736
LguI	GCTCTTC	1 cut(s)	761
LmnI	GCTCC	1 cut(s)	235
LweI	GCATC	1 cut(s)	180
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	1 cut(s)	345
MaeIII	GTNAC	2 cut(s)	205, 307
MalI	GATC	3 cut(s)	5, 432, 738
MboI	GATC	3 cut(s)	3, 430, 736
MboII	GAAGA	9 cut(s)	139, 362, 367, 773, 778, 799, 835, 838, 852
MflI	RGATCY	1 cut(s)	430
MhlI	GDGCHC	1 cut(s)	375
MluCI	AATT	7 cut(s)	44, 537, 635, 667, 715, 806, 843
MlyI	GAGTC	1 cut(s)	617
MnlI	CCTC	9 cut(s)	49, 292, 295, 507, 589, 625, 679, 724, 813
MseI	TTAA	5 cut(s)	362, 411, 621, 719, 750
MslI	CAYNNNNRTG	1 cut(s)	548
Mva1269I	GAATGC	1 cut(s)	658
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	3 cut(s)	3, 430, 736
NlaIII	CATG	4 cut(s)	78, 322, 629, 775
NlaIV	GGNNCC	1 cut(s)	857
NspI	RCATGY	3 cut(s)	78, 322, 629
PaeI	GCATGC	1 cut(s)	629
PaqCI	CACCTGC	1 cut(s)	386
PciI	ACATGT	1 cut(s)	74
PciSI	GCTCTTC	1 cut(s)	761
PctI	GAATGC	1 cut(s)	658
PkrI	GCNGC	1 cut(s)	159
PleI	GAGTC	1 cut(s)	616
PpsI	GAGTC	1 cut(s)	616
PscI	ACATGT	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	857
PsuI	RGATCY	1 cut(s)	430
RsaI	GTAC	1 cut(s)	73
RsaNI	GTAC	1 cut(s)	72
RseI	CAYNNNNRTG	1 cut(s)	548
SapI	GCTCTTC	1 cut(s)	761
SaqAI	TTAA	5 cut(s)	362, 411, 621, 719, 750
SatI	GCNGC	1 cut(s)	158
Sau3AI	GATC	3 cut(s)	3, 430, 736
SchI	GAGTC	1 cut(s)	617
SduI	GDGCHC	1 cut(s)	375
SfaNI	GCATC	1 cut(s)	180
SmiMI	CAYNNNNRTG	1 cut(s)	548
SmlI	CTYRAG	1 cut(s)	780
SmoI	CTYRAG	1 cut(s)	780
SphI	GCATGC	1 cut(s)	629
Sse9I	AATT	7 cut(s)	44, 537, 635, 667, 715, 806, 843
SsiI	CCGC	1 cut(s)	157
SspMI	CTAG	1 cut(s)	315
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	5 cut(s)	152, 205, 277, 523, 712
TaiI	ACGT	1 cut(s)	348
TaqI	TCGA	1 cut(s)	660
TasI	AATT	7 cut(s)	44, 537, 635, 667, 715, 806, 843
TatI	WGTACW	1 cut(s)	71
TauI	GCSGC	1 cut(s)	160
Tru1I	TTAA	5 cut(s)	362, 411, 621, 719, 750
Tru9I	TTAA	5 cut(s)	362, 411, 621, 719, 750
TscAI	CASTG	4 cut(s)	40, 251, 456, 717
TspDTI	ATGAA	1 cut(s)	456
TspRI	CASTG	4 cut(s)	40, 251, 456, 717
XapI	RAATTY	2 cut(s)	667, 715
XceI	RCATGY	3 cut(s)	78, 322, 629
XcmI	CCANNNNNNNNNTGG	1 cut(s)	16
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.