Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009334

Physical Location & Seq

Genomic Coordinates Reverse (-)

21933614 .. 21935650

Gene Structure 2037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g17960.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCTACGATCGGCGCCACGAGGCTTGATTACTACGACGACATGTGGAAGCTCGAATCCACTGCCACAGTGGTGGCGCTGGTCAAGGGTGAAGATGGCCGGACCGGTTTGGTTTTGGACCGGACGGTGTTCCATCCGCAAGGCGGCGGTCAACCGGCGGACACAGGCTTCGTCGGCGTTGCTGGCTCGGAGGTGAAGTTCGTCGTGCAAGATGTGCGGTCCAAAGACGGTGTGGTTTACCACTACGGTTTGGTGGAGAATTCCGGCGAGGAGTGGGCGGAGGAGTTTGACAAAGGGAGAGAGGTGGTGTTGCATGTTGATGAGTCTAGGCGGAAGCTTAATTCTAGGATTCATTCAGCTGGGCATTTGCTAGATGCGTGTATGAAGAATGTGGGATTAGGCGAGTTAAAGCCGAGCAAAGGCTACCATTTCCCTCAGGGGCCATATGTGGAATATATAGGCATAGTTCCACAGAAAGATTTGCAAAGTAAGCAGAAAGAGTTGGAGCTGGAAGCCAATGCATTGATATCCAGAGGAGGGAAAGTTTTTGTTGCAGTAGTATCATATGAGGAAGCATGTAAGCTGTGTGGTGAAGACCTTCCCGATTATATTCCAAAGGACAGCACTCCTCGTATTGTGAAGTTGGGCAACAATCCTGCCTGCCCGTGTGGTGGTACTCATGTGTCTGATATTTCAGAGATGATCAGTGTTACAGTTTCTCAAATACGTACCAAAAAAGGATTGACGAAGTTCTTTTACAATGTTGGTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004812 GO:0004813 GO:0005488 GO:0006082 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006412 GO:0006418 GO:0006419 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0031406 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0036094 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043412 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA-synt_2c tRNA_SAD

Protein Analysis

258

Amino Acids

28.11

Weight (kDa)

5.84

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2c	PF01411	34 - 109	5e-10	tRNA synthetases class II (A)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16565 AT3G16565 AT3G16565 AT3G16565 AT3G16565 AT3G16565
fragaria_vesca	FvH4_4g17960
malus_domestica	MD13G1169000.v1.1 MD16G1169600.v1.1
prunus_persica	Prupe.1G137400_v2.0.a1
pyrus_communis	pycom13g14460
rosa_chinensis	RchiOBHm_Chr4g0422131
rosa_laevigata	RLG00000007632
rosa_multiflora	Rmu_sc0004902.1_g000006 Rmu_sc0036261.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364210
rosa_rugosa	Rorug04G0177600
rosa_samantha	Rh4AG237100 Rh4BG239900 Rh4CG251800 Rh4DG236000
rosa_wichuraiana	Rw4G020510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	14
AciI	CCGC	7 cut(s)	137, 144, 147, 158, 217, 278, 331
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	1 cut(s)	259
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	2 cut(s)	676, 730
AfiI	CCNNNNNNNGG	4 cut(s)	143, 419, 537, 671
AflIII	ACRYGT	1 cut(s)	42
AgeI	ACCGGT	1 cut(s)	104
AleI	CACNNNNGTG	1 cut(s)	71
AloI	GAACNNNNNNTCC	2 cut(s)	182, 214
AluBI	AGCT	5 cut(s)	52, 337, 359, 508, 583
AluI	AGCT	5 cut(s)	52, 337, 359, 508, 583
AoxI	GGCC	2 cut(s)	97, 440
ApoI	RAATTY	1 cut(s)	259
ArsI	GACNNNNNNTTYG	2 cut(s)	152, 184
AsiGI	ACCGGT	1 cut(s)	104
Asp700I	GAANNNNTTC	1 cut(s)	597
AspLEI	GCGC	2 cut(s)	17, 79
AspS9I	GGNCC	5 cut(s)	102, 118, 219, 440, 767
AsuHPI	GGTGA	3 cut(s)	101, 205, 602
AvaII	GGWCC	4 cut(s)	102, 118, 219, 767
AxyI	CCTNAGG	1 cut(s)	435
BaeI	ACNNNNGTAYC	2 cut(s)	666, 699
BanI	GGYRCC	1 cut(s)	14
BarI	GAAGNNNNNNTAC	2 cut(s)	740, 772
BauI	CACGAG	1 cut(s)	19
BbsI	GAAGAC	1 cut(s)	600
BccI	CCATC	2 cut(s)	89, 141
BcgI	CGANNNNNNTGC	2 cut(s)	44, 78
BclI	TGATCA	1 cut(s)	702
BfaI	CTAG	3 cut(s)	327, 345, 371
BfoI	RGCGCY	2 cut(s)	18, 80
BisI	GCNGC	1 cut(s)	145
BlsI	GCNGC	1 cut(s)	146
Bme18I	GGWCC	4 cut(s)	102, 118, 219, 767
BmgT120I	GGNCC	5 cut(s)	102, 118, 219, 440, 767
BmiI	GGNNCC	3 cut(s)	16, 441, 769
BmsI	GCATC	1 cut(s)	364
BpiI	GAAGAC	1 cut(s)	600
BsaAI	YACGTR	1 cut(s)	728
BsaHI	GRCGYC	1 cut(s)	15
BsaWI	WCCGGW	2 cut(s)	104, 120
BsaXI	ACNNNNNCTCC	4 cut(s)	182, 212, 528, 558
Bsc4I	CCNNNNNNNGG	4 cut(s)	143, 419, 537, 671
Bse118I	RCCGGY	2 cut(s)	104, 154
Bse21I	CCTNAGG	1 cut(s)	435
BseGI	GGATG	1 cut(s)	133
BseLI	CCNNNNNNNGG	4 cut(s)	143, 419, 537, 671
BseMII	CTCAG	1 cut(s)	449
BseRI	GAGGAG	4 cut(s)	284, 296, 549, 618
BseYI	CCCAGC	1 cut(s)	359
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	2 cut(s)	99, 442
BshNI	GGYRCC	1 cut(s)	14
BshTI	ACCGGT	1 cut(s)	104
BsiEI	CGRYCG	1 cut(s)	12
BsiSI	CCGG	5 cut(s)	100, 105, 121, 155, 264
BslFI	GGGAC	1 cut(s)	753
BslI	CCNNNNNNNGG	4 cut(s)	143, 419, 537, 671
BsmFI	GGGAC	1 cut(s)	753
BsnI	GGCC	2 cut(s)	99, 442
Bsp143I	GATC	2 cut(s)	9, 702
BspACI	CCGC	7 cut(s)	137, 144, 147, 158, 217, 278, 331
BspANI	GGCC	2 cut(s)	99, 442
BspCNI	CTCAG	1 cut(s)	448
BspLI	GGNNCC	3 cut(s)	16, 441, 769
BspT107I	GGYRCC	1 cut(s)	14
BsrFI	RCCGGY	2 cut(s)	104, 154
BssAI	RCCGGY	2 cut(s)	104, 154
BssMI	GATC	2 cut(s)	9, 702
BssNI	GRCGYC	1 cut(s)	15
BssSI	CACGAG	1 cut(s)	19
Bst2BI	CACGAG	1 cut(s)	19
Bst4CI	ACNGT	5 cut(s)	70, 127, 230, 248, 715
BstACI	GRCGYC	1 cut(s)	15
BstAPI	GCANNNNNTGC	1 cut(s)	214
BstBAI	YACGTR	1 cut(s)	728
BstC8I	GCNNGC	2 cut(s)	184, 661
BstDEI	CTNAG	1 cut(s)	435
BstF5I	GGATG	1 cut(s)	133
BstH2I	RGCGCY	2 cut(s)	18, 80
BstHHI	GCGC	2 cut(s)	17, 79
BstKTI	GATC	2 cut(s)	12, 705
BstMBI	GATC	2 cut(s)	9, 702
BstMCI	CGRYCG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	4 cut(s)	174, 183, 214, 490
BstNSI	RCATGY	3 cut(s)	46, 317, 579
BstSNI	TACGTA	1 cut(s)	728
BstV2I	GAAGAC	1 cut(s)	600
BstXI	CCANNNNNNTGG	1 cut(s)	73
Bsu36I	CCTNAGG	1 cut(s)	435
BsuRI	GGCC	2 cut(s)	99, 442
BtsCI	GGATG	1 cut(s)	133
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	3 cut(s)	60, 75, 712
Cac8I	GCNNGC	2 cut(s)	184, 661
CfoI	GCGC	2 cut(s)	17, 79
Cfr10I	RCCGGY	2 cut(s)	104, 154
Cfr13I	GGNCC	5 cut(s)	102, 118, 219, 440, 767
CpoI	CGGWCCG	1 cut(s)	102
Csp6I	GTAC	2 cut(s)	675, 729
CspAI	ACCGGT	1 cut(s)	104
CspCI	CAANNNNNGTGG	2 cut(s)	7, 42
CspI	CGGWCCG	1 cut(s)	102
CviAII	CATG	4 cut(s)	43, 314, 576, 680
CviQI	GTAC	2 cut(s)	675, 729
DdeI	CTNAG	1 cut(s)	435
DinI	GGCGCC	1 cut(s)	16
DpnI	GATC	2 cut(s)	11, 704
DpnII	GATC	2 cut(s)	9, 702
EaeI	YGGCCR	1 cut(s)	97
EciI	GGCGGA	3 cut(s)	173, 293, 346
Eco105I	TACGTA	1 cut(s)	728
Eco32I	GATATC	1 cut(s)	528
Eco47I	GGWCC	4 cut(s)	102, 118, 219, 767
Eco81I	CCTNAGG	1 cut(s)	435
EcoRI	GAATTC	1 cut(s)	259
EcoRV	GATATC	1 cut(s)	528
EcoT22I	ATGCAT	1 cut(s)	523
EgeI	GGCGCC	1 cut(s)	16
EheI	GGCGCC	1 cut(s)	16
FaeI	CATG	4 cut(s)	46, 317, 579, 683
FaqI	GGGAC	1 cut(s)	753
FatI	CATG	4 cut(s)	42, 313, 575, 679
FauNDI	CATATG	2 cut(s)	445, 565
FbaI	TGATCA	1 cut(s)	702
Fnu4HI	GCNGC	1 cut(s)	145
FokI	GGATG	1 cut(s)	120
Fsp4HI	GCNGC	1 cut(s)	145
FspBI	CTAG	3 cut(s)	327, 345, 371
GlaI	GCGC	2 cut(s)	16, 78
GluI	GCNGC	1 cut(s)	145
GsaI	CCCAGC	1 cut(s)	363
HaeII	RGCGCY	2 cut(s)	18, 80
HaeIII	GGCC	2 cut(s)	99, 442
HapII	CCGG	5 cut(s)	100, 105, 121, 155, 264
HhaI	GCGC	2 cut(s)	17, 79
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	4 cut(s)	46, 317, 579, 683
Hin6I	GCGC	2 cut(s)	15, 77
HinP1I	GCGC	2 cut(s)	15, 77
HincII	GTYRAC	1 cut(s)	152
HindII	GTYRAC	1 cut(s)	152
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	3 cut(s)	56, 323, 349
HpaII	CCGG	5 cut(s)	100, 105, 121, 155, 264
HphI	GGTGA	3 cut(s)	101, 205, 602
Hpy166II	GTNNAC	2 cut(s)	152, 238
Hpy188I	TCNGA	3 cut(s)	190, 688, 697
Hpy188III	TCNNGA	2 cut(s)	531, 602
Hpy8I	GTNNAC	2 cut(s)	152, 238
Hpy99I	CGWCG	3 cut(s)	41, 176, 206
HpyAV	CCTTC	1 cut(s)	608
HpyCH4III	ACNGT	5 cut(s)	70, 127, 230, 248, 715
HpyCH4IV	ACGT	1 cut(s)	727
HpyCH4V	TGCA	5 cut(s)	208, 313, 484, 521, 554
HpyF10VI	GCNNNNNNNGC	4 cut(s)	174, 183, 214, 490
HpyF3I	CTNAG	1 cut(s)	435
HpySE526I	ACGT	1 cut(s)	727
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	4 cut(s)	46, 317, 579, 683
HspAI	GCGC	2 cut(s)	15, 77
KasI	GGCGCC	1 cut(s)	14
Ksp22I	TGATCA	1 cut(s)	702
Kzo9I	GATC	2 cut(s)	9, 702
LmnI	GCTCC	1 cut(s)	505
LweI	GCATC	1 cut(s)	364
MaeI	CTAG	3 cut(s)	327, 345, 371
MaeII	ACGT	1 cut(s)	727
MaeIII	GTNAC	1 cut(s)	709
MalI	GATC	2 cut(s)	11, 704
MboI	GATC	2 cut(s)	9, 702
MboII	GAAGA	3 cut(s)	104, 397, 605
MluCI	AATT	2 cut(s)	259, 340
Mly113I	GGCGCC	1 cut(s)	15
MlyI	GAGTC	1 cut(s)	332
MmeI	TCCRAC	1 cut(s)	483
Mph1103I	ATGCAT	1 cut(s)	523
MroXI	GAANNNNTTC	1 cut(s)	597
MseI	TTAA	2 cut(s)	339, 407
MslI	CAYNNNNRTG	2 cut(s)	71, 318
MspA1I	CMGCKG	1 cut(s)	359
MspI	CCGG	5 cut(s)	100, 105, 121, 155, 264
MwoI	GCNNNNNNNGC	4 cut(s)	174, 183, 214, 490
NarI	GGCGCC	1 cut(s)	15
NdeI	CATATG	2 cut(s)	445, 565
NdeII	GATC	2 cut(s)	9, 702
NlaIII	CATG	4 cut(s)	46, 317, 579, 683
NlaIV	GGNNCC	3 cut(s)	16, 441, 769
NmeAIII	GCCGAG	1 cut(s)	438
NsiI	ATGCAT	1 cut(s)	523
NspI	RCATGY	3 cut(s)	46, 317, 579
OliI	CACNNNNGTG	1 cut(s)	71
PciI	ACATGT	1 cut(s)	42
PdmI	GAANNNNTTC	1 cut(s)	597
PfeI	GAWTC	2 cut(s)	56, 349
PinAI	ACCGGT	1 cut(s)	104
PkrI	GCNGC	1 cut(s)	146
Ple19I	CGATCG	1 cut(s)	12
PleI	GAGTC	1 cut(s)	331
PluTI	GGCGCC	1 cut(s)	18
PpsI	GAGTC	1 cut(s)	331
Ppu21I	YACGTR	1 cut(s)	728
PscI	ACATGT	1 cut(s)	42
PspFI	CCCAGC	1 cut(s)	359
PspN4I	GGNNCC	3 cut(s)	16, 441, 769
PspPI	GGNCC	5 cut(s)	102, 118, 219, 440, 767
PvuI	CGATCG	1 cut(s)	12
PvuII	CAGCTG	1 cut(s)	359
RsaI	GTAC	2 cut(s)	676, 730
RsaNI	GTAC	2 cut(s)	675, 729
RseI	CAYNNNNRTG	2 cut(s)	71, 318
Rsr2I	CGGWCCG	1 cut(s)	102
RsrII	CGGWCCG	1 cut(s)	102
SaqAI	TTAA	2 cut(s)	339, 407
SatI	GCNGC	1 cut(s)	145
Sau3AI	GATC	2 cut(s)	9, 702
Sau96I	GGNCC	5 cut(s)	102, 118, 219, 440, 767
SchI	GAGTC	1 cut(s)	332
SetI	ASST	9 cut(s)	54, 195, 306, 339, 361, 510, 585, 600, 730
SfaNI	GCATC	1 cut(s)	364
SfoI	GGCGCC	1 cut(s)	16
SinI	GGWCC	4 cut(s)	102, 118, 219, 767
SmiMI	CAYNNNNRTG	2 cut(s)	71, 318
SnaBI	TACGTA	1 cut(s)	728
Sse9I	AATT	2 cut(s)	259, 340
SsiI	CCGC	7 cut(s)	137, 144, 147, 158, 217, 278, 331
SspDI	GGCGCC	1 cut(s)	14
SspMI	CTAG	3 cut(s)	327, 345, 371
TaaI	ACNGT	5 cut(s)	70, 127, 230, 248, 715
TaiI	ACGT	1 cut(s)	730
TaqI	TCGA	1 cut(s)	54
TasI	AATT	2 cut(s)	259, 340
TauI	GCSGC	1 cut(s)	147
TfiI	GAWTC	2 cut(s)	56, 349
Tru1I	TTAA	2 cut(s)	339, 407
Tru9I	TTAA	2 cut(s)	339, 407
TscAI	CASTG	3 cut(s)	67, 75, 712
TspDTI	ATGAA	2 cut(s)	341, 398
TspRI	CASTG	3 cut(s)	67, 75, 712
VpaK11BI	GGWCC	4 cut(s)	102, 118, 219, 767
XapI	RAATTY	1 cut(s)	259
XceI	RCATGY	3 cut(s)	46, 317, 579
XcmI	CCANNNNNNNNNTGG	2 cut(s)	67, 229
XmnI	GAANNNNTTC	1 cut(s)	597
XspI	CTAG	3 cut(s)	327, 345, 371
Zsp2I	ATGCAT	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.