Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0009334

Physical Location & Seq

Genomic Coordinates Forward (+)

14094797 .. 14096876

Gene Structure 2080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1169600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAGCGGTCCAACCGTCCAAAGACGGCATAGTAAGTTTTCCACTACGGTTTCGTTGAGAATTCCGGCGAGGAAGCAGAGGCGAAATTCGAGAAAGGGAAAGAGGGTGGTGTTGTGTGCTTCGCTCGGCCGGGCGTTTGCTGGATACATACATGTATGGGGCCATATGTGCAAATATAAAAGCACGGTTCCACAAAAAGATATAGCAAGTAAGCAAAAGGAGTTGGACGTACAAGCTAATGCATTAATATCAAGAGGAGGAAAAGTTTCTGCTGCCTTGTTACCATTTGAAGAAGCGTGTAAGCCGTGTGGTGATTGCCTTCCCGATTATATTGCAAAGGTTATTCTGTACCTGTTCAAAATACCTTCTCATATCGGACCCTTAAAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004812 GO:0004813 GO:0005488 GO:0006082 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006412 GO:0006418 GO:0006419 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0031406 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0036094 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043412 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA-synt_2c tRNA_SAD

Protein Analysis

131

Amino Acids

14.47

Weight (kDa)

10.21

Isoelectric Point (pI)

49.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16565 AT3G16565 AT3G16565 AT3G16565 AT3G16565 AT3G16565
fragaria_vesca	FvH4_4g17960
malus_domestica	MD13G1169000.v1.1 MD16G1169600.v1.1
prunus_persica	Prupe.1G137400_v2.0.a1
pyrus_communis	pycom13g14460
rosa_chinensis	RchiOBHm_Chr4g0422131
rosa_laevigata	RLG00000007632
rosa_multiflora	Rmu_sc0004902.1_g000006 Rmu_sc0036261.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364210
rosa_rugosa	Rorug04G0177600
rosa_samantha	Rh4AG237100 Rh4BG239900 Rh4CG251800 Rh4DG236000
rosa_wichuraiana	Rw4G020510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	6
AciI	CCGC	1 cut(s)	6
AcoI	YGGCCR	1 cut(s)	127
AcsI	RAATTY	3 cut(s)	60, 85, 386
AfaI	GTAC	2 cut(s)	231, 350
AflIII	ACRYGT	1 cut(s)	151
AgsI	TTSAA	2 cut(s)	290, 358
AluBI	AGCT	1 cut(s)	236
AluI	AGCT	1 cut(s)	236
AoxI	GGCC	2 cut(s)	127, 160
ApeKI	GCWGC	1 cut(s)	272
ApoI	RAATTY	3 cut(s)	60, 85, 386
AseI	ATTAAT	1 cut(s)	245
Asp700I	GAANNNNTTC	1 cut(s)	265
AspS9I	GGNCC	3 cut(s)	8, 160, 377
AsuC2I	CCSGG	1 cut(s)	131
AsuHPI	GGTGA	1 cut(s)	323
AvaII	GGWCC	2 cut(s)	8, 377
BbvI	GCAGC	1 cut(s)	259
BceAI	ACGGC	2 cut(s)	41, 289
BcgI	CGANNNNNNTGC	2 cut(s)	314, 348
BciVI	GTATCC	1 cut(s)	137
BcnI	CCSGG	1 cut(s)	131
BfuI	GTATCC	1 cut(s)	137
BisI	GCNGC	1 cut(s)	273
BlsI	GCNGC	1 cut(s)	274
Bme1390I	CCNGG	1 cut(s)	131
Bme18I	GGWCC	2 cut(s)	8, 377
BmgT120I	GGNCC	3 cut(s)	8, 160, 377
BmiI	GGNNCC	3 cut(s)	161, 189, 379
BmrFI	CCNGG	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	131
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
BseRI	GAGGAG	1 cut(s)	270
BseX3I	CGGCCG	1 cut(s)	127
BseXI	GCAGC	1 cut(s)	259
Bsh1285I	CGRYCG	1 cut(s)	130
BshFI	GGCC	2 cut(s)	129, 162
BsiEI	CGRYCG	1 cut(s)	130
BsiSI	CCGG	2 cut(s)	65, 130
BsnI	GGCC	2 cut(s)	129, 162
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	2 cut(s)	129, 162
BspLI	GGNNCC	3 cut(s)	161, 189, 379
BsrBI	CCGCTC	1 cut(s)	6
Bst4CI	ACNGT	3 cut(s)	16, 49, 187
BstMCI	CGRYCG	1 cut(s)	130
BstMWI	GCNNNNNNNGC	1 cut(s)	168
BstNSI	RCATGY	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	129
BstV1I	GCAGC	1 cut(s)	259
BstZI	CGGCCG	1 cut(s)	127
BsuI	GTATCC	1 cut(s)	137
BsuRI	GGCC	2 cut(s)	129, 162
Cfr13I	GGNCC	3 cut(s)	8, 160, 377
Csp6I	GTAC	2 cut(s)	230, 349
CviAII	CATG	1 cut(s)	152
CviJI	RGCY	4 cut(s)	129, 162, 236, 304
CviKI_1	RGCY	4 cut(s)	129, 162, 236, 304
CviQI	GTAC	2 cut(s)	230, 349
EaeI	YGGCCR	1 cut(s)	127
EagI	CGGCCG	1 cut(s)	127
EclXI	CGGCCG	1 cut(s)	127
Eco47I	GGWCC	2 cut(s)	8, 377
Eco52I	CGGCCG	1 cut(s)	127
EcoRI	GAATTC	1 cut(s)	60
EcoT22I	ATGCAT	1 cut(s)	244
FaeI	CATG	1 cut(s)	155
FatI	CATG	1 cut(s)	151
FauNDI	CATATG	1 cut(s)	165
Fnu4HI	GCNGC	1 cut(s)	273
Fsp4HI	GCNGC	1 cut(s)	273
GluI	GCNGC	1 cut(s)	273
HaeIII	GGCC	2 cut(s)	129, 162
HapII	CCGG	2 cut(s)	65, 130
Hin1II	CATG	1 cut(s)	155
HpaII	CCGG	2 cut(s)	65, 130
HphI	GGTGA	1 cut(s)	323
Hpy188I	TCNGA	1 cut(s)	377
Hpy188III	TCNNGA	3 cut(s)	90, 252, 323
HpyAV	CCTTC	2 cut(s)	329, 375
HpyCH4III	ACNGT	3 cut(s)	16, 49, 187
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	3 cut(s)	171, 242, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	168
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	1 cut(s)	155
LpnPI	CCDG	4 cut(s)	78, 126, 143, 365
Lsp1109I	GCAGC	1 cut(s)	259
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	1 cut(s)	279
MbiI	CCGCTC	1 cut(s)	6
MboII	GAAGA	1 cut(s)	302
MluCI	AATT	3 cut(s)	60, 85, 386
MmeI	TCCRAC	2 cut(s)	35, 204
MnlI	CCTC	5 cut(s)	63, 72, 96, 248, 251
Mph1103I	ATGCAT	1 cut(s)	244
MroXI	GAANNNNTTC	1 cut(s)	265
MseI	TTAA	2 cut(s)	245, 383
MspI	CCGG	2 cut(s)	65, 130
MspR9I	CCNGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	1 cut(s)	168
NciI	CCSGG	1 cut(s)	131
NdeI	CATATG	1 cut(s)	165
NlaIII	CATG	1 cut(s)	155
NlaIV	GGNNCC	3 cut(s)	161, 189, 379
NmeAIII	GCCGAG	1 cut(s)	105
NsiI	ATGCAT	1 cut(s)	244
NspI	RCATGY	1 cut(s)	155
PciI	ACATGT	1 cut(s)	151
PdmI	GAANNNNTTC	1 cut(s)	265
PkrI	GCNGC	1 cut(s)	274
PscI	ACATGT	1 cut(s)	151
PshBI	ATTAAT	1 cut(s)	245
PspN4I	GGNNCC	3 cut(s)	161, 189, 379
PspPI	GGNCC	3 cut(s)	8, 160, 377
RsaI	GTAC	2 cut(s)	231, 350
RsaNI	GTAC	2 cut(s)	230, 349
SaqAI	TTAA	2 cut(s)	245, 383
SatI	GCNGC	1 cut(s)	273
Sau96I	GGNCC	3 cut(s)	8, 160, 377
ScrFI	CCNGG	1 cut(s)	131
SetI	ASST	5 cut(s)	231, 238, 342, 354, 367
SinI	GGWCC	2 cut(s)	8, 377
Sse9I	AATT	3 cut(s)	60, 85, 386
SsiI	CCGC	1 cut(s)	6
StyD4I	CCNGG	1 cut(s)	129
TaaI	ACNGT	3 cut(s)	16, 49, 187
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	1 cut(s)	89
TasI	AATT	3 cut(s)	60, 85, 386
Tru1I	TTAA	2 cut(s)	245, 383
Tru9I	TTAA	2 cut(s)	245, 383
TseI	GCWGC	1 cut(s)	272
VpaK11BI	GGWCC	2 cut(s)	8, 377
VspI	ATTAAT	1 cut(s)	245
XapI	RAATTY	3 cut(s)	60, 85, 386
XceI	RCATGY	1 cut(s)	155
XmnI	GAANNNNTTC	1 cut(s)	265
Zsp2I	ATGCAT	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.