Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006630

Physical Location & Seq

Genomic Coordinates Forward (+)

31185237 .. 31209944

Gene Structure 24708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0177600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGTCAACAGAAAGTGGAAAGAAGAACAAATTTTTAGGAGGCGATAATAACAGTCCAAAGAGAGGACAAAGAATGCTTAATGATCAGAATCTGACTACTCTTCCTAACATGACCATGGATTGTAGAAGAAAATCAAAAAGGTGGAGAGAAGCATCTGAGATATTGATCACCAAAGAGAGTCAGAGTCAGACTTGCAGCAGTAATAATCAAAATGGGATGCCAACAAACAGTAGAAAAAGTAAACTAAGGAGAGTTTCGGGAGGTGATCTTGCTAATATGAGCATGGATTGTCGAAGAAAATCAAGAAGGTGGAGAGAAGTATCTGAGCCAATGCTACTCGAAAAGAATCAGATTTTTGAGAGTCATGATGAAAATGGCGATGCATCAAACTATTGTGATCTGGGAAGTAGAAATGATCTTCTAAATTCTGACGTGGTCGCAAATGAGAGGTTATTTTCCCATGAAAATTCAGCTCCTTATAGTACATATATGATAGGTGAATCTTCTTATTCAAGTGGTCAAGCAGCGTATCAAAAAACTAAAGAAGGGTTGATTGTGAAATATGAGGACTCTGGAGACAACGTCTATAATTGTACTTATTGCGGTGCAAACTTTTGGCACGAAGAAGCTATAAAACAATCATCTATAAATGCGCAACTCATATATACAAATTGTTGTAGAAAAGGACAGATTAAGCTTCCACAACCTAGACCAACTCCTAATTTTCTTAGAACATTATTGAACGACAAACATTTTAAAGAAAATATTCGAGTTTATAATTCAATGTTCTGTTTCACATCAATGGGAGCAAAAATTGATCATAAAATAAATTCTGGATCAGGTCTTTACATATTTAAAATCAATGGACAAGTACATCATTTAATGGGTTCTGTGTTGCCTTCTGAAGGTGAGTCTCCTAAATATGCTCAATTATATGTATATGATACTAGAAATGAAATTTCAAATCGTATTAATGCTATTGATCCTACTCATGTTAATCAAAATATTAGATCAGATATTGTTGAAGGACTTATTAGGATGTTTGATGAAATTAATGAATTAGCAAAACAATTTCGCATTATGAGAGATAAATTTGAAAACCGTTCTTTACCTTCATTTAAGATGAGTATTGTAATACCCGAAAAATTCAAATTAATGTCCGATGACATTTTGGAAATGATTTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004812 GO:0004813 GO:0005488 GO:0006082 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006412 GO:0006418 GO:0006419 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0031406 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0036094 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043412 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA-synt_2c tRNA_SAD

Protein Analysis

395

Amino Acids

45.29

Weight (kDa)

8.89

Isoelectric Point (pI)

51.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14800 AT1G36030 AT1G67623 AT1G74875 AT2G35280 AT3G30430 AT5G17167
fragaria_vesca	FvH4_4g17961
malus_domestica	MD16G1169500.v1.1 MD16G1170100.v1.1
prunus_persica	Prupe.1G137300_v2.0.a1 Prupe.1G137300_v2.0.a1
pyrus_communis	pycom01g02790 pycom01g02800 pycom16g14270
rosa_chinensis	RchiOBHm_Chr4g0422141
rosa_laevigata	RLG00000007631
rosa_multiflora	Rmu_sc0004902.1_g000005
rosa_roxburghii	Rroxscaffold_5G00364220 Rroxscaffold_5G00364230
rosa_rugosa	Rorug04G0177600
rosa_samantha	Rh4AG237200 Rh4BG240000 Rh4CG251900 Rh4DG236100
rosa_wichuraiana	Rw4G020520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	777
Acc16I	TGCGCA	1 cut(s)	654
AciI	CCGC	1 cut(s)	603
AclWI	GGATC	2 cut(s)	844, 977
AcsI	RAATTY	7 cut(s)	29, 424, 466, 829, 957, 1091, 1145
AcuI	CTGAAG	1 cut(s)	924
AfaI	GTAC	3 cut(s)	484, 595, 873
AfiI	CCNNNNNNNGG	2 cut(s)	62, 905
AgsI	TTSAA	7 cut(s)	513, 742, 783, 963, 1025, 1097, 1150
AjiI	CACGTC	1 cut(s)	433
AluBI	AGCT	3 cut(s)	473, 629, 697
AluI	AGCT	3 cut(s)	473, 629, 697
Alw26I	GTCTC	2 cut(s)	570, 918
AlwI	GGATC	2 cut(s)	844, 977
AlwNI	CAGNNNCTG	1 cut(s)	91
ApeKI	GCWGC	2 cut(s)	195, 524
ApoI	RAATTY	7 cut(s)	29, 424, 466, 829, 957, 1091, 1145
AseI	ATTAAT	3 cut(s)	972, 1053, 1154
Asp700I	GAANNNNTTC	1 cut(s)	765
AspLEI	GCGC	1 cut(s)	655
AsuHPI	GGTGA	4 cut(s)	160, 275, 509, 920
BbvI	GCAGC	2 cut(s)	207, 536
BclI	TGATCA	3 cut(s)	82, 165, 817
BcoDI	GTCTC	2 cut(s)	570, 918
BfaI	CTAG	2 cut(s)	708, 948
BisI	GCNGC	2 cut(s)	196, 525
BlsI	GCNGC	2 cut(s)	197, 526
BmgBI	CACGTC	1 cut(s)	433
BmsI	GCATC	4 cut(s)	161, 207, 370, 392
BpmI	CTGGAG	1 cut(s)	594
BsaBI	GATNNNNATC	2 cut(s)	87, 164
BsaJI	CCNNGG	1 cut(s)	114
BsaXI	ACNNNNNCTCC	2 cut(s)	567, 597
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 905
Bse8I	GATNNNNATC	2 cut(s)	87, 164
BseDI	CCNNGG	1 cut(s)	114
BseGI	GGATG	2 cut(s)	222, 1044
BseJI	GATNNNNATC	2 cut(s)	87, 164
BseLI	CCNNNNNNNGG	2 cut(s)	62, 905
BseMII	CTCAG	2 cut(s)	147, 315
BseXI	GCAGC	2 cut(s)	207, 536
BslI	CCNNNNNNNGG	2 cut(s)	62, 905
BsmAI	GTCTC	2 cut(s)	570, 918
BsmI	GAATGC	1 cut(s)	78
Bsp143I	GATC	9 cut(s)	82, 165, 265, 397, 415, 817, 836, 982, 1010
Bsp19I	CCATGG	1 cut(s)	114
BspACI	CCGC	1 cut(s)	603
BspCNI	CTCAG	2 cut(s)	148, 316
BspHI	TCATGA	1 cut(s)	364
BspPI	GGATC	2 cut(s)	844, 977
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	9 cut(s)	82, 165, 265, 397, 415, 817, 836, 982, 1010
BssT1I	CCWWGG	1 cut(s)	114
Bst4CI	ACNGT	3 cut(s)	53, 230, 1103
Bst6I	CTCTTC	1 cut(s)	105
BstDEI	CTNAG	4 cut(s)	156, 245, 324, 728
BstDSI	CCRYGG	1 cut(s)	114
BstENI	CCTNNNNNAGG	1 cut(s)	903
BstF5I	GGATG	2 cut(s)	222, 1044
BstHHI	GCGC	1 cut(s)	655
BstKTI	GATC	9 cut(s)	85, 168, 268, 400, 418, 820, 839, 985, 1013
BstMAI	GTCTC	2 cut(s)	570, 918
BstMBI	GATC	9 cut(s)	82, 165, 265, 397, 415, 817, 836, 982, 1010
BstV1I	GCAGC	2 cut(s)	207, 536
BtgI	CCRYGG	1 cut(s)	114
BtgZI	GCGATG	1 cut(s)	393
BtrI	CACGTC	1 cut(s)	433
BtsCI	GGATG	2 cut(s)	222, 1044
CaiI	CAGNNNCTG	1 cut(s)	91
CciI	TCATGA	1 cut(s)	364
CfoI	GCGC	1 cut(s)	655
Csp6I	GTAC	3 cut(s)	483, 594, 872
CviAII	CATG	6 cut(s)	109, 115, 283, 365, 461, 992
CviJI	RGCY	4 cut(s)	328, 473, 629, 697
CviKI_1	RGCY	4 cut(s)	328, 473, 629, 697
CviQI	GTAC	3 cut(s)	483, 594, 872
DdeI	CTNAG	4 cut(s)	156, 245, 324, 728
DpnI	GATC	9 cut(s)	84, 167, 267, 399, 417, 819, 838, 984, 1012
DpnII	GATC	9 cut(s)	82, 165, 265, 397, 415, 817, 836, 982, 1010
DraI	TTTAAA	2 cut(s)	757, 856
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Eco130I	CCWWGG	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	924
EcoNI	CCTNNNNNAGG	1 cut(s)	903
EcoT14I	CCWWGG	1 cut(s)	114
EcoT22I	ATGCAT	1 cut(s)	385
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	6 cut(s)	112, 118, 286, 368, 464, 995
FatI	CATG	6 cut(s)	108, 114, 282, 364, 460, 991
FbaI	TGATCA	3 cut(s)	82, 165, 817
Fnu4HI	GCNGC	2 cut(s)	196, 525
FokI	GGATG	2 cut(s)	229, 1051
Fsp4HI	GCNGC	2 cut(s)	196, 525
FspBI	CTAG	2 cut(s)	708, 948
FspI	TGCGCA	1 cut(s)	654
GlaI	GCGC	1 cut(s)	654
GluI	GCNGC	2 cut(s)	196, 525
GsuI	CTGGAG	1 cut(s)	594
HhaI	GCGC	1 cut(s)	655
Hin1II	CATG	6 cut(s)	112, 118, 286, 368, 464, 995
Hin6I	GCGC	1 cut(s)	653
HinP1I	GCGC	1 cut(s)	653
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	695
HinfI	GANTC	8 cut(s)	88, 178, 184, 346, 361, 500, 569, 911
HphI	GGTGA	4 cut(s)	160, 275, 509, 920
Hpy166II	GTNNAC	2 cut(s)	6, 242
Hpy188III	TCNNGA	5 cut(s)	258, 303, 365, 573, 834
Hpy8I	GTNNAC	2 cut(s)	6, 242
HpyAV	CCTTC	6 cut(s)	300, 539, 899, 909, 1019, 1122
HpyCH4III	ACNGT	3 cut(s)	53, 230, 1103
HpyCH4IV	ACGT	2 cut(s)	432, 582
HpyCH4V	TGCA	3 cut(s)	195, 383, 608
HpyF3I	CTNAG	4 cut(s)	156, 245, 324, 728
HpySE526I	ACGT	2 cut(s)	432, 582
Hsp92II	CATG	6 cut(s)	112, 118, 286, 368, 464, 995
HspAI	GCGC	1 cut(s)	653
Ksp22I	TGATCA	3 cut(s)	82, 165, 817
Kzo9I	GATC	9 cut(s)	82, 165, 265, 397, 415, 817, 836, 982, 1010
LmnI	GCTCC	2 cut(s)	478, 806
LpnPI	CCDG	4 cut(s)	386, 558, 819, 825
Lsp1109I	GCAGC	2 cut(s)	207, 536
LweI	GCATC	4 cut(s)	161, 207, 370, 392
MaeI	CTAG	2 cut(s)	708, 948
MaeII	ACGT	2 cut(s)	432, 582
MalI	GATC	9 cut(s)	84, 167, 267, 399, 417, 819, 838, 984, 1012
MboI	GATC	9 cut(s)	82, 165, 265, 397, 415, 817, 836, 982, 1010
MboII	GAAGA	7 cut(s)	34, 92, 138, 306, 410, 495, 635
MlyI	GAGTC	5 cut(s)	187, 193, 370, 563, 920
MnlI	CCTC	5 cut(s)	32, 56, 254, 441, 559
Mph1103I	ATGCAT	1 cut(s)	385
MroXI	GAANNNNTTC	1 cut(s)	765
MslI	CAYNNNNRTG	2 cut(s)	113, 800
Mva1269I	GAATGC	1 cut(s)	78
NcoI	CCATGG	1 cut(s)	114
NdeII	GATC	9 cut(s)	82, 165, 265, 397, 415, 817, 836, 982, 1010
NlaIII	CATG	6 cut(s)	112, 118, 286, 368, 464, 995
NsbI	TGCGCA	1 cut(s)	654
NsiI	ATGCAT	1 cut(s)	385
PagI	TCATGA	1 cut(s)	364
PctI	GAATGC	1 cut(s)	78
PdmI	GAANNNNTTC	1 cut(s)	765
PfeI	GAWTC	3 cut(s)	88, 346, 500
PflFI	GACNNNGTC	2 cut(s)	434, 581
PkrI	GCNGC	2 cut(s)	197, 526
PleI	GAGTC	5 cut(s)	186, 192, 369, 563, 919
PpsI	GAGTC	5 cut(s)	186, 192, 369, 563, 919
PshBI	ATTAAT	3 cut(s)	972, 1053, 1154
PsiI	TTATAA	1 cut(s)	777
PstNI	CAGNNNCTG	1 cut(s)	91
PsyI	GACNNNGTC	2 cut(s)	434, 581
RsaI	GTAC	3 cut(s)	484, 595, 873
RsaNI	GTAC	3 cut(s)	483, 594, 872
RseI	CAYNNNNRTG	2 cut(s)	113, 800
SatI	GCNGC	2 cut(s)	196, 525
Sau3AI	GATC	9 cut(s)	82, 165, 265, 397, 415, 817, 836, 982, 1010
SchI	GAGTC	5 cut(s)	187, 193, 370, 563, 920
SfaNI	GCATC	4 cut(s)	161, 207, 370, 392
SmiMI	CAYNNNNRTG	2 cut(s)	113, 800
SsiI	CCGC	1 cut(s)	603
SspI	AATATT	2 cut(s)	766, 1006
SspMI	CTAG	2 cut(s)	708, 948
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	3 cut(s)	53, 230, 1103
TaiI	ACGT	2 cut(s)	435, 585
TaqI	TCGA	3 cut(s)	292, 339, 769
TatI	WGTACW	3 cut(s)	482, 593, 871
TfiI	GAWTC	3 cut(s)	88, 346, 500
TseI	GCWGC	2 cut(s)	195, 524
TspDTI	ATGAA	6 cut(s)	384, 477, 969, 1062, 1071, 1104
Tth111I	GACNNNGTC	2 cut(s)	434, 581
VspI	ATTAAT	3 cut(s)	972, 1053, 1154
XagI	CCTNNNNNAGG	1 cut(s)	903
XapI	RAATTY	7 cut(s)	29, 424, 466, 829, 957, 1091, 1145
XmnI	GAANNNNTTC	1 cut(s)	765
XspI	CTAG	2 cut(s)	708, 948
Zsp2I	ATGCAT	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.