Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0006630

Physical Location & Seq

Genomic Coordinates Forward (+)

40639179 .. 40640302

Gene Structure 1124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG240000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGCGTCTCTCTCAACGACAAGGAATGAGGTTTTTTCTTCTTTGGCAAAGGTAAGGAAGAAGGTTAGAAAGCGTAGGTCAAGAAAGGAAGGTCATAACGTTTCGGCCATGAAGTCACTTCCCAACGATCTTTTGTTGGAAGTGATTGCTAAGGTTGCTTCGAATTCTTTCGATGATCTTTGCCGCATTAGGCAAACTTGCAAGGAGTTTAACGAGGCGGGGCAAGAGGACTATATTTTTCAACATGTATCGATCGAAAAGTTTCCACTCTTTCCTTTGAGAAAAAGGAAACGATTTTCTGAATTAATGAGACGTTGCCAAAAGTGTGGCAATGCAGAGGCTCTGTATAGACAAGGAGTGCTTGATCTTTTTAGCTTGAGGAAGCGATATGAATTCGAATCGGGATTCGAGTGTTTGGAGAAAGCTGCAGCAAAAGGTCACATAGAAGCAACGTATCTTTATGGGGTATTCTTAACTTGTGTAGGAGGTGAGGCGAAGCAACAAGGTCTACAATCCTTGTGTAGTCTCAATGGTAAAGATTTAAGTGAATCAAGAGAAAGGTTTATGACTTGCATTCAAAGTATGTGGGTGAATAATGTCCTAGTACGTAAAATACTTGCCTACAATGATCGTGTTAAAGCATGCAGCCAATGCGGAAATTTGCAGAATAATTTCGTAACCAAACGAGGCTGGGACGATGTTTACGACGAAGGTGATAACTTAAATGGGTGTGGTTCATGCAAGATGAATCGAGAAGTTAATATTTTTTGTGATAGATTACGTAGCTCTACATATGTCAATTCATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

269

Amino Acids

30.86

Weight (kDa)

9.27

Isoelectric Point (pI)

53.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	38 - 85	5.5e-06	F-box-like
TPR_27	PF23310	87 - 192	1.6e-27	Plant tetratrico peptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14800 AT1G36030 AT1G67623 AT1G74875 AT2G35280 AT3G30430 AT5G17167
fragaria_vesca	FvH4_4g17961
malus_domestica	MD16G1169500.v1.1 MD16G1170100.v1.1
prunus_persica	Prupe.1G137300_v2.0.a1 Prupe.1G137300_v2.0.a1
pyrus_communis	pycom01g02790 pycom01g02800 pycom16g14270
rosa_chinensis	RchiOBHm_Chr4g0422141
rosa_laevigata	RLG00000007631
rosa_multiflora	Rmu_sc0004902.1_g000005
rosa_roxburghii	Rroxscaffold_5G00364220 Rroxscaffold_5G00364230
rosa_rugosa	Rorug04G0177600
rosa_samantha	Rh4AG237200 Rh4BG240000 Rh4CG251900 Rh4DG236100
rosa_wichuraiana	Rw4G020520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	508
AciI	CCGC	3 cut(s)	184, 218, 654
AclI	AACGTT	1 cut(s)	99
AcoI	YGGCCR	1 cut(s)	105
AcsI	RAATTY	3 cut(s)	163, 392, 658
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	606
AflIII	ACRYGT	1 cut(s)	244
AgsI	TTSAA	2 cut(s)	242, 578
AluBI	AGCT	3 cut(s)	375, 425, 786
AluI	AGCT	3 cut(s)	375, 425, 786
Alw26I	GTCTC	3 cut(s)	12, 304, 530
AoxI	GGCC	1 cut(s)	105
ApeKI	GCWGC	3 cut(s)	425, 428, 645
ApoI	RAATTY	3 cut(s)	163, 392, 658
AseI	ATTAAT	1 cut(s)	305
Asp700I	GAANNNNTTC	3 cut(s)	167, 261, 671
AsuHPI	GGTGA	3 cut(s)	500, 601, 725
AsuII	TTCGAA	2 cut(s)	161, 396
BbvI	GCAGC	3 cut(s)	412, 440, 657
BcoDI	GTCTC	3 cut(s)	12, 304, 530
BfaI	CTAG	1 cut(s)	602
BfmI	CTRYAG	1 cut(s)	426
BisI	GCNGC	4 cut(s)	184, 426, 429, 646
BlsI	GCNGC	4 cut(s)	185, 427, 430, 647
Bpu10I	CCTNAGC	1 cut(s)	150
Bpu14I	TTCGAA	2 cut(s)	161, 396
BpuEI	CTTGAG	1 cut(s)	397
Bsa29I	ATCGAT	1 cut(s)	251
BsaAI	YACGTR	2 cut(s)	608, 782
BsaHI	GRCGYC	1 cut(s)	5
Bse3DI	GCAATG	1 cut(s)	337
BseCI	ATCGAT	1 cut(s)	251
BseMI	GCAATG	1 cut(s)	337
BseXI	GCAGC	3 cut(s)	412, 440, 657
BseYI	CCCAGC	1 cut(s)	690
Bsh1285I	CGRYCG	1 cut(s)	255
BshFI	GGCC	1 cut(s)	107
BshVI	ATCGAT	1 cut(s)	251
BsiEI	CGRYCG	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	707
BsmAI	GTCTC	3 cut(s)	12, 304, 530
BsmBI	CGTCTC	2 cut(s)	12, 304
BsmFI	GGGAC	1 cut(s)	707
BsmI	GAATGC	1 cut(s)	573
BsnI	GGCC	1 cut(s)	107
Bsp119I	TTCGAA	2 cut(s)	161, 396
Bsp143I	GATC	5 cut(s)	127, 175, 252, 364, 628
BspACI	CCGC	3 cut(s)	184, 218, 654
BspANI	GGCC	1 cut(s)	107
BspDI	ATCGAT	1 cut(s)	251
BspMAI	CTGCAG	1 cut(s)	430
BspT104I	TTCGAA	2 cut(s)	161, 396
BsrDI	GCAATG	1 cut(s)	337
BssMI	GATC	5 cut(s)	127, 175, 252, 364, 628
BssNI	GRCGYC	1 cut(s)	5
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	651
BstBAI	YACGTR	2 cut(s)	608, 782
BstBI	TTCGAA	2 cut(s)	161, 396
BstC8I	GCNNGC	1 cut(s)	643
BstDEI	CTNAG	1 cut(s)	150
BstKTI	GATC	5 cut(s)	130, 178, 255, 367, 631
BstMAI	GTCTC	3 cut(s)	12, 304, 530
BstMBI	GATC	5 cut(s)	127, 175, 252, 364, 628
BstMCI	CGRYCG	1 cut(s)	255
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 651
BstNSI	RCATGY	2 cut(s)	248, 645
BstSFI	CTRYAG	1 cut(s)	426
BstSNI	TACGTA	2 cut(s)	608, 782
BstV1I	GCAGC	3 cut(s)	412, 440, 657
BstXI	CCANNNNNNTGG	1 cut(s)	326
Bsu15I	ATCGAT	1 cut(s)	251
BsuRI	GGCC	1 cut(s)	107
BsuTUI	ATCGAT	1 cut(s)	251
Cac8I	GCNNGC	1 cut(s)	643
ClaI	ATCGAT	1 cut(s)	251
Csp6I	GTAC	1 cut(s)	605
CspCI	CAANNNNNGTGG	2 cut(s)	566, 601
CviAII	CATG	4 cut(s)	109, 245, 642, 738
CviJI	RGCY	7 cut(s)	107, 341, 375, 425, 648, 690, 786
CviKI_1	RGCY	7 cut(s)	107, 341, 375, 425, 648, 690, 786
CviQI	GTAC	1 cut(s)	605
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	5 cut(s)	129, 177, 254, 366, 630
DpnII	GATC	5 cut(s)	127, 175, 252, 364, 628
EaeI	YGGCCR	1 cut(s)	105
Eco105I	TACGTA	2 cut(s)	608, 782
EcoRI	GAATTC	2 cut(s)	163, 392
Esp3I	CGTCTC	2 cut(s)	12, 304
FaeI	CATG	4 cut(s)	112, 248, 645, 741
FalI	AAGNNNNNCTT	2 cut(s)	345, 377
FaqI	GGGAC	1 cut(s)	707
FatI	CATG	4 cut(s)	108, 244, 641, 737
FauI	CCCGC	1 cut(s)	211
FauNDI	CATATG	1 cut(s)	793
FblI	GTMKAC	1 cut(s)	508
Fnu4HI	GCNGC	4 cut(s)	184, 426, 429, 646
Fsp4HI	GCNGC	4 cut(s)	184, 426, 429, 646
FspBI	CTAG	1 cut(s)	602
GluI	GCNGC	4 cut(s)	184, 426, 429, 646
GsaI	CCCAGC	1 cut(s)	694
HaeIII	GGCC	1 cut(s)	107
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	112, 248, 645, 741
HinfI	GANTC	4 cut(s)	398, 405, 548, 748
HphI	GGTGA	3 cut(s)	500, 601, 725
Hpy166II	GTNNAC	2 cut(s)	509, 703
Hpy188I	TCNGA	1 cut(s)	301
Hpy188III	TCNNGA	4 cut(s)	81, 402, 552, 752
Hpy8I	GTNNAC	2 cut(s)	509, 703
Hpy99I	CGWCG	1 cut(s)	710
HpyAV	CCTTC	3 cut(s)	55, 83, 704
HpyCH4IV	ACGT	5 cut(s)	99, 313, 452, 607, 781
HpyCH4V	TGCA	7 cut(s)	201, 335, 428, 573, 645, 664, 741
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 651
HpyF3I	CTNAG	1 cut(s)	150
HpySE526I	ACGT	5 cut(s)	99, 313, 452, 607, 781
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	112, 248, 645, 741
Kzo9I	GATC	5 cut(s)	127, 175, 252, 364, 628
LpnPI	CCDG	1 cut(s)	676
Lsp1109I	GCAGC	3 cut(s)	412, 440, 657
MaeI	CTAG	1 cut(s)	602
MaeII	ACGT	5 cut(s)	99, 313, 452, 607, 781
MaeIII	GTNAC	3 cut(s)	114, 437, 676
MalI	GATC	5 cut(s)	129, 177, 254, 366, 630
MboI	GATC	5 cut(s)	127, 175, 252, 364, 628
MboII	GAAGA	2 cut(s)	30, 70
MluCI	AATT	6 cut(s)	163, 302, 392, 658, 670, 799
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	8 cut(s)	22, 208, 220, 331, 372, 479, 484, 680
MroXI	GAANNNNTTC	3 cut(s)	167, 261, 671
MseI	TTAA	7 cut(s)	210, 305, 473, 542, 636, 722, 759
Mva1269I	GAATGC	1 cut(s)	573
MwoI	GCNNNNNNNGC	2 cut(s)	155, 651
NdeI	CATATG	1 cut(s)	793
NdeII	GATC	5 cut(s)	127, 175, 252, 364, 628
NlaIII	CATG	4 cut(s)	112, 248, 645, 741
NmuCI	GTSAC	2 cut(s)	114, 437
NspI	RCATGY	2 cut(s)	248, 645
NspV	TTCGAA	2 cut(s)	161, 396
PaeI	GCATGC	1 cut(s)	645
PciI	ACATGT	1 cut(s)	244
PcsI	WCGNNNNNNNCGW	1 cut(s)	702
PctI	GAATGC	1 cut(s)	573
PdmI	GAANNNNTTC	3 cut(s)	167, 261, 671
PfeI	GAWTC	4 cut(s)	398, 405, 548, 748
PkrI	GCNGC	4 cut(s)	185, 427, 430, 647
Ple19I	CGATCG	1 cut(s)	255
Ppu21I	YACGTR	2 cut(s)	608, 782
PscI	ACATGT	1 cut(s)	244
PshBI	ATTAAT	1 cut(s)	305
Psp1406I	AACGTT	1 cut(s)	99
PspFI	CCCAGC	1 cut(s)	690
PstI	CTGCAG	1 cut(s)	430
PvuI	CGATCG	1 cut(s)	255
RsaI	GTAC	1 cut(s)	606
RsaNI	GTAC	1 cut(s)	605
SaqAI	TTAA	7 cut(s)	210, 305, 473, 542, 636, 722, 759
SatI	GCNGC	4 cut(s)	184, 426, 429, 646
Sau3AI	GATC	5 cut(s)	127, 175, 252, 364, 628
SfcI	CTRYAG	1 cut(s)	426
SfuI	TTCGAA	2 cut(s)	161, 396
SmlI	CTYRAG	1 cut(s)	376
SmoI	CTYRAG	1 cut(s)	376
SnaBI	TACGTA	2 cut(s)	608, 782
SphI	GCATGC	1 cut(s)	645
Sse9I	AATT	6 cut(s)	163, 302, 392, 658, 670, 799
SsiI	CCGC	3 cut(s)	184, 218, 654
SspI	AATATT	1 cut(s)	763
SspMI	CTAG	1 cut(s)	602
TaiI	ACGT	5 cut(s)	102, 316, 455, 610, 784
TaqI	TCGA	7 cut(s)	161, 171, 251, 255, 396, 408, 751
TasI	AATT	6 cut(s)	163, 302, 392, 658, 670, 799
TauI	GCSGC	1 cut(s)	186
TfiI	GAWTC	4 cut(s)	398, 405, 548, 748
Tru1I	TTAA	7 cut(s)	210, 305, 473, 542, 636, 722, 759
Tru9I	TTAA	7 cut(s)	210, 305, 473, 542, 636, 722, 759
TseFI	GTSAC	2 cut(s)	114, 437
TseI	GCWGC	3 cut(s)	425, 428, 645
Tsp45I	GTSAC	2 cut(s)	114, 437
TspDTI	ATGAA	5 cut(s)	125, 405, 726, 761, 792
VspI	ATTAAT	1 cut(s)	305
XapI	RAATTY	3 cut(s)	163, 392, 658
XceI	RCATGY	2 cut(s)	248, 645
XmiI	GTMKAC	1 cut(s)	508
XmnI	GAANNNNTTC	3 cut(s)	167, 261, 671
XspI	CTAG	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.