Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006630

Physical Location & Seq

Genomic Coordinates Forward (+)

5099572 .. 5102558

Gene Structure 2987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G14800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGCTGAAGTTGATGTTGTTGCAATTCCTTCTAAAGCAAACTATGTAGCTTTTGATGCTTTACGTCTTGGTCGCTCTACTCAACAGGTTGTTGGTCGCCTACTTCGTTTTTGGGATGCTCGCAACATCAAGAAAGATGGCCAATTCATGGGCATAGTCCTCCTGTTACTTGATGAAAAATGCTCCGTAATCCATGCTTTTATCCCAGCAGCTCTTGCTTCACATTTCCGCCAAGTTTTGCGTGAAGGCATAATCTTCAATGTTAGTGGGTTTGAAGTGGGACGTTGCACGAAACTCTACAAGATCACTGACCATCCTTTTCTCCTCCGTTTTCTCCCTGCCACAACGATTATTGAAGTTTCAGATGTTGGCCCTACAATTGAGAGGGAAAAATTTATGCTACGTAACTTTGACAACCTTCAAGCTCTTGCTAACACCAACATTGAACTTCCTGGCCAAATCACTTTCGTCCAAGGGTCAAACTTGAATGATCCAACTTCTACTCAACGTTTGGTTTTGCGATACCGGATTGATTCGTCTGTTATTGTCTACTTATCACTATGGGATGATGTCGCCGCAACCTTTCGTGCCCATCTTAGCTCTGGACGAGCTGAGGAGCTTGAGGGCGAGCTGATAAGCTTGAGGACGAGCAGAGGAGCTAGAGAACGAGCTGAGGAGCTTGAAGACTTTATTCTTGATTTGGGCCGAGCTAAAATGAGGGGTGCAATCCATCCCCCAACATGCCCCATGGAGCTTTCCGTATTTTTCTTCCCCAGAAGCTCAAACATCAACAGTTATTCACTAAAAGCAAACGATGAACGCGTGCTCAAAACCCTTAATCTTGCTCCGTTGGTGAAGAAACCGTTATCATGCCGCAAACACCATCTTATTATGAAGAAATGTCTTGCCAACAACAACCCGGATGCTCACTACATAAAAGGTATAATATGGTACTTTAACCTTGATCATTGTGACGTTGGTCTCCACCATATTGGCATAGCAGCTAACGGAGGCCAGAAAGAAGCAATCTACATCCCGGTTGTCTTCGGTGAGATCAACCAAGTCGGTACAGATTCGAACCGGAAAATTGCCAAGAGGTTCAAGCGTGTGCATGATGAGTTCAGATTTAAGAGACAACTTTATGAATCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

PIF1 Rep_fac-A_C

Protein Analysis

384

Amino Acids

43.58

Weight (kDa)

9.28

Isoelectric Point (pI)

36.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF223	PF02721	32 - 118	9.3e-08	Domain of unknown function DUF223
TPR_27	PF23310	291 - 348	4.5e-09	Plant tetratrico peptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14800 AT1G36030 AT1G67623 AT1G74875 AT2G35280 AT3G30430 AT5G17167
fragaria_vesca	FvH4_4g17961
malus_domestica	MD16G1169500.v1.1 MD16G1170100.v1.1
prunus_persica	Prupe.1G137300_v2.0.a1 Prupe.1G137300_v2.0.a1
pyrus_communis	pycom01g02790 pycom01g02800 pycom16g14270
rosa_chinensis	RchiOBHm_Chr4g0422141
rosa_laevigata	RLG00000007631
rosa_multiflora	Rmu_sc0004902.1_g000005
rosa_roxburghii	Rroxscaffold_5G00364220 Rroxscaffold_5G00364230
rosa_rugosa	Rorug04G0177600
rosa_samantha	Rh4AG237200 Rh4BG240000 Rh4CG251900 Rh4DG236100
rosa_wichuraiana	Rw4G020520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	148
AccI	GTMKAC	1 cut(s)	549
AccII	CGCG	1 cut(s)	822
AciI	CCGC	3 cut(s)	229, 576, 874
AclI	AACGTT	1 cut(s)	508
AclWI	GGATC	1 cut(s)	485
AcoI	YGGCCR	2 cut(s)	139, 454
AcsI	RAATTY	1 cut(s)	392
AcuI	CTGAAG	1 cut(s)	27
AfaI	GTAC	2 cut(s)	953, 1069
AfiI	CCNNNNNNNGG	1 cut(s)	148
AflIII	ACRYGT	1 cut(s)	820
AgsI	TTSAA	8 cut(s)	259, 275, 356, 422, 446, 487, 683, 1102
AjnI	CCWGG	1 cut(s)	451
Alw21I	GWGCWC	1 cut(s)	828
Alw26I	GTCTC	2 cut(s)	986, 1126
AlwI	GGATC	1 cut(s)	485
AoxI	GGCC	5 cut(s)	139, 370, 454, 703, 1012
ApeKI	GCWGC	2 cut(s)	209, 1001
ApoI	RAATTY	1 cut(s)	392
AspS9I	GGNCC	2 cut(s)	371, 703
AsuC2I	CCSGG	2 cut(s)	920, 1037
AsuHPI	GGTGA	2 cut(s)	865, 1061
AsuII	TTCGAA	1 cut(s)	1076
BaeGI	GKGCMC	1 cut(s)	592
BalI	TGGCCA	2 cut(s)	141, 456
BbsI	GAAGAC	2 cut(s)	690, 1036
Bbv12I	GWGCWC	1 cut(s)	828
BbvCI	CCTCAGC	2 cut(s)	612, 672
BbvI	GCAGC	2 cut(s)	221, 1013
BccI	CCATC	5 cut(s)	131, 321, 600, 738, 891
BciT130I	CCWGG	1 cut(s)	453
BclI	TGATCA	1 cut(s)	964
BcnI	CCSGG	2 cut(s)	920, 1037
BcoDI	GTCTC	2 cut(s)	986, 1126
BfaI	CTAG	1 cut(s)	660
BisI	GCNGC	4 cut(s)	210, 576, 874, 1002
BlsI	GCNGC	4 cut(s)	211, 577, 875, 1003
Bme1390I	CCNGG	3 cut(s)	453, 920, 1037
BmgT120I	GGNCC	2 cut(s)	371, 703
BmrFI	CCNGG	3 cut(s)	453, 920, 1037
BmsI	GCATC	3 cut(s)	46, 106, 913
BoxI	GACNNNNGTC	1 cut(s)	978
BpiI	GAAGAC	2 cut(s)	690, 1036
Bpu10I	CCTNAGC	2 cut(s)	612, 672
Bpu14I	TTCGAA	1 cut(s)	1076
BpuEI	CTTGAG	2 cut(s)	641, 661
BpuMI	CCSGG	2 cut(s)	920, 1037
BsaAI	YACGTR	1 cut(s)	404
BsaI	GGTCTC	1 cut(s)	986
BsaJI	CCNNGG	2 cut(s)	472, 747
BsaWI	WCCGGW	2 cut(s)	525, 1080
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
BseBI	CCWGG	1 cut(s)	453
BseDI	CCNNGG	2 cut(s)	472, 747
BseGI	GGATG	6 cut(s)	121, 313, 571, 730, 928, 1032
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseMII	CTCAG	2 cut(s)	603, 663
BseRI	GAGGAG	4 cut(s)	314, 629, 669, 689
BseSI	GKGCMC	1 cut(s)	592
BseXI	GCAGC	2 cut(s)	221, 1013
BseYI	CCCAGC	1 cut(s)	205
Bsh1236I	CGCG	1 cut(s)	822
BshFI	GGCC	5 cut(s)	141, 372, 456, 705, 1014
BsiHKAI	GWGCWC	1 cut(s)	828
BsiSI	CCGG	4 cut(s)	526, 920, 1037, 1081
BslFI	GGGAC	1 cut(s)	294
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmAI	GTCTC	2 cut(s)	986, 1126
BsmFI	GGGAC	1 cut(s)	294
BsnI	GGCC	5 cut(s)	141, 372, 456, 705, 1014
Bso31I	GGTCTC	1 cut(s)	986
Bsp119I	TTCGAA	1 cut(s)	1076
Bsp1286I	GDGCHC	2 cut(s)	592, 828
Bsp143I	GATC	4 cut(s)	303, 490, 964, 1053
Bsp19I	CCATGG	1 cut(s)	747
BspACI	CCGC	3 cut(s)	229, 576, 874
BspANI	GGCC	5 cut(s)	141, 372, 456, 705, 1014
BspCNI	CTCAG	2 cut(s)	604, 664
BspFNI	CGCG	1 cut(s)	822
BspPI	GGATC	1 cut(s)	485
BspT104I	TTCGAA	1 cut(s)	1076
BspTNI	GGTCTC	1 cut(s)	986
BssECI	CCNNGG	2 cut(s)	472, 747
BssMI	GATC	4 cut(s)	303, 490, 964, 1053
BssT1I	CCWWGG	2 cut(s)	472, 747
Bst2UI	CCWGG	1 cut(s)	453
Bst4CI	ACNGT	2 cut(s)	794, 864
BstAPI	GCANNNNNTGC	1 cut(s)	215
BstBAI	YACGTR	1 cut(s)	404
BstBI	TTCGAA	1 cut(s)	1076
BstC8I	GCNNGC	3 cut(s)	121, 629, 824
BstDEI	CTNAG	3 cut(s)	596, 612, 672
BstDSI	CCRYGG	1 cut(s)	747
BstF5I	GGATG	6 cut(s)	121, 313, 571, 730, 928, 1032
BstFNI	CGCG	1 cut(s)	822
BstKTI	GATC	4 cut(s)	306, 493, 967, 1056
BstMAI	GTCTC	2 cut(s)	986, 1126
BstMBI	GATC	4 cut(s)	303, 490, 964, 1053
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 215
BstNI	CCWGG	1 cut(s)	453
BstNSI	RCATGY	1 cut(s)	744
BstPAI	GACNNNNGTC	1 cut(s)	978
BstSCI	CCNGG	3 cut(s)	451, 918, 1035
BstSLI	GKGCMC	1 cut(s)	592
BstSNI	TACGTA	1 cut(s)	404
BstUI	CGCG	1 cut(s)	822
BstV1I	GCAGC	2 cut(s)	221, 1013
BstV2I	GAAGAC	2 cut(s)	690, 1036
BstXI	CCANNNNNNTGG	1 cut(s)	992
BsuRI	GGCC	5 cut(s)	141, 372, 456, 705, 1014
BtgI	CCRYGG	1 cut(s)	747
BtsCI	GGATG	6 cut(s)	121, 313, 571, 730, 928, 1032
BtsIMutI	CAGTG	1 cut(s)	306
Cac8I	GCNNGC	3 cut(s)	121, 629, 824
Cfr13I	GGNCC	2 cut(s)	371, 703
Csp6I	GTAC	2 cut(s)	952, 1068
CspCI	CAANNNNNGTGG	2 cut(s)	247, 282
CviAII	CATG	6 cut(s)	148, 194, 741, 748, 870, 1112
CviQI	GTAC	2 cut(s)	952, 1068
DdeI	CTNAG	3 cut(s)	596, 612, 672
DpnI	GATC	4 cut(s)	305, 492, 966, 1055
DpnII	GATC	4 cut(s)	303, 490, 964, 1053
EaeI	YGGCCR	2 cut(s)	139, 454
EciI	GGCGGA	1 cut(s)	218
Eco105I	TACGTA	1 cut(s)	404
Eco130I	CCWWGG	2 cut(s)	472, 747
Eco31I	GGTCTC	1 cut(s)	986
Eco57I	CTGAAG	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	451
EcoT14I	CCWWGG	2 cut(s)	472, 747
ErhI	CCWWGG	2 cut(s)	472, 747
FaeI	CATG	6 cut(s)	151, 197, 744, 751, 873, 1115
FaqI	GGGAC	1 cut(s)	294
FatI	CATG	6 cut(s)	147, 193, 740, 747, 869, 1111
FbaI	TGATCA	1 cut(s)	964
FblI	GTMKAC	1 cut(s)	549
Fnu4HI	GCNGC	4 cut(s)	210, 576, 874, 1002
FokI	GGATG	6 cut(s)	128, 300, 578, 717, 935, 1019
Fsp4HI	GCNGC	4 cut(s)	210, 576, 874, 1002
FspBI	CTAG	1 cut(s)	660
GluI	GCNGC	4 cut(s)	210, 576, 874, 1002
GsaI	CCCAGC	1 cut(s)	209
HaeIII	GGCC	5 cut(s)	141, 372, 456, 705, 1014
HapII	CCGG	4 cut(s)	526, 920, 1037, 1081
Hin1II	CATG	6 cut(s)	151, 197, 744, 751, 873, 1115
HindIII	AAGCTT	1 cut(s)	637
HinfI	GANTC	3 cut(s)	533, 1073, 1145
HpaII	CCGG	4 cut(s)	526, 920, 1037, 1081
HphI	GGTGA	2 cut(s)	865, 1061
Hpy166II	GTNNAC	1 cut(s)	550
Hpy188I	TCNGA	2 cut(s)	364, 1124
Hpy188III	TCNNGA	3 cut(s)	130, 603, 695
Hpy8I	GTNNAC	1 cut(s)	550
HpyAV	CCTTC	3 cut(s)	39, 239, 428
HpyCH4III	ACNGT	2 cut(s)	794, 864
HpyCH4IV	ACGT	5 cut(s)	64, 283, 403, 508, 975
HpyCH4V	TGCA	4 cut(s)	23, 288, 725, 1111
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 215
HpyF3I	CTNAG	3 cut(s)	596, 612, 672
HpySE526I	ACGT	5 cut(s)	64, 283, 403, 508, 975
Hsp92II	CATG	6 cut(s)	151, 197, 744, 751, 873, 1115
Ksp22I	TGATCA	1 cut(s)	964
Kzo9I	GATC	4 cut(s)	303, 490, 964, 1053
LmnI	GCTCC	6 cut(s)	188, 616, 656, 676, 751, 850
Lsp1109I	GCAGC	2 cut(s)	221, 1013
LweI	GCATC	3 cut(s)	46, 106, 913
MaeI	CTAG	1 cut(s)	660
MaeII	ACGT	5 cut(s)	64, 283, 403, 508, 975
MaeIII	GTNAC	3 cut(s)	165, 404, 971
MalI	GATC	4 cut(s)	305, 492, 966, 1055
MboI	GATC	4 cut(s)	303, 490, 964, 1053
MboII	GAAGA	6 cut(s)	247, 695, 760, 868, 907, 1036
MfeI	CAATTG	1 cut(s)	378
MhlI	GDGCHC	2 cut(s)	592, 828
MlsI	TGGCCA	2 cut(s)	141, 456
MluCI	AATT	5 cut(s)	24, 143, 378, 392, 1086
MluI	ACGCGT	1 cut(s)	820
MluNI	TGGCCA	2 cut(s)	141, 456
MmeI	TCCRAC	1 cut(s)	518
Mox20I	TGGCCA	2 cut(s)	141, 456
MscI	TGGCCA	2 cut(s)	141, 456
MseI	TTAA	3 cut(s)	837, 957, 1128
Msp20I	TGGCCA	2 cut(s)	141, 456
MspI	CCGG	4 cut(s)	526, 920, 1037, 1081
MspR9I	CCNGG	3 cut(s)	453, 920, 1037
MunI	CAATTG	1 cut(s)	378
MvaI	CCWGG	1 cut(s)	453
MvnI	CGCG	1 cut(s)	822
MwoI	GCNNNNNNNGC	2 cut(s)	56, 215
NciI	CCSGG	2 cut(s)	920, 1037
NcoI	CCATGG	1 cut(s)	747
NdeII	GATC	4 cut(s)	303, 490, 964, 1053
NlaIII	CATG	6 cut(s)	151, 197, 744, 751, 873, 1115
NmeAIII	GCCGAG	1 cut(s)	731
NmuCI	GTSAC	1 cut(s)	971
NspI	RCATGY	1 cut(s)	744
NspV	TTCGAA	1 cut(s)	1076
PcsI	WCGNNNNNNNCGW	2 cut(s)	103, 819
PfeI	GAWTC	3 cut(s)	533, 1073, 1145
PflMI	CCANNNNNTGG	1 cut(s)	148
PkrI	GCNGC	4 cut(s)	211, 577, 875, 1003
Ppu21I	YACGTR	1 cut(s)	404
PshAI	GACNNNNGTC	1 cut(s)	978
Psp1406I	AACGTT	1 cut(s)	508
Psp6I	CCWGG	1 cut(s)	451
PspFI	CCCAGC	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	451
PspPI	GGNCC	2 cut(s)	371, 703
RsaI	GTAC	2 cut(s)	953, 1069
RsaNI	GTAC	2 cut(s)	952, 1068
SaqAI	TTAA	3 cut(s)	837, 957, 1128
SatI	GCNGC	4 cut(s)	210, 576, 874, 1002
Sau3AI	GATC	4 cut(s)	303, 490, 964, 1053
Sau96I	GGNCC	2 cut(s)	371, 703
ScrFI	CCNGG	3 cut(s)	453, 920, 1037
SduI	GDGCHC	2 cut(s)	592, 828
SfaNI	GCATC	3 cut(s)	46, 106, 913
SfuI	TTCGAA	1 cut(s)	1076
SmlI	CTYRAG	2 cut(s)	620, 640
SmoI	CTYRAG	2 cut(s)	620, 640
SnaBI	TACGTA	1 cut(s)	404
Sse9I	AATT	5 cut(s)	24, 143, 378, 392, 1086
SsiI	CCGC	3 cut(s)	229, 576, 874
SspMI	CTAG	1 cut(s)	660
StyD4I	CCNGG	3 cut(s)	451, 918, 1035
StyI	CCWWGG	2 cut(s)	472, 747
TaaI	ACNGT	2 cut(s)	794, 864
TaiI	ACGT	5 cut(s)	67, 286, 406, 511, 978
TaqI	TCGA	1 cut(s)	1076
TasI	AATT	5 cut(s)	24, 143, 378, 392, 1086
TauI	GCSGC	2 cut(s)	578, 876
TfiI	GAWTC	3 cut(s)	533, 1073, 1145
Tru1I	TTAA	3 cut(s)	837, 957, 1128
Tru9I	TTAA	3 cut(s)	837, 957, 1128
TscAI	CASTG	1 cut(s)	313
TseFI	GTSAC	1 cut(s)	971
TseI	GCWGC	2 cut(s)	209, 1001
Tsp45I	GTSAC	1 cut(s)	971
TspDTI	ATGAA	4 cut(s)	136, 189, 831, 908
TspGWI	ACGGA	5 cut(s)	175, 317, 748, 837, 1023
TspRI	CASTG	1 cut(s)	313
Van91I	CCANNNNNTGG	1 cut(s)	148
XapI	RAATTY	1 cut(s)	392
XceI	RCATGY	1 cut(s)	744
XcmI	CCANNNNNNNNNTGG	1 cut(s)	599
XmiI	GTMKAC	1 cut(s)	549
XspI	CTAG	1 cut(s)	660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.