Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006630

Physical Location & Seq

Genomic Coordinates Forward (+)

2286184 .. 2287336

Gene Structure 1153 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g02790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGGAAGTTGCATCGTTTGCATGACCCTTATTCTCCATCTATTTAAGTTGTCTTGTGGGTTTATGTTTCATTACAAAACCACAAGCCGCACCACCTATTCCTCTAAGCAATCTGTTTTTTTTTATGACGTTCTTCTCAAAATTCTCATCATCGTTGCTTCCCGCTCGTTAAGGGACCTCTTTTCGACAAAGATAGTCTCAAAGAAGTTCAAGGAAATAGCCGAAGACTGTCACATCTACCAATACATCAATATTACAAACTTTGAGACCGTCAACCAGCTTAGACCATGGGGCGCTGTTGCAACCCCGAGGCCCTCTACATGGTGGGGATGCAATACTTATTCCGAGACAACAAGGAAGAAGCCAAAATTTAGCTGCTTAAGAGTGCAATCTCAAAGGAGTAGCAACTTATGTGTACGGTGCGATCTTGGTGTGCCACAGGTGGGATTACAAGCACGAAGGTGTAATGGAACGCCGAGAGAGGTTTTAGTTGTGTTTGTTGGGTTTTTGGGTGCACAGTGTAAGGGCCCGAATCCTCAAACTACACCACTACAACTGTGCTATCAAACCTTGCAGCGATTGTGGAAGTCCACAGGGTCCGGTCACACTCCGAACGCATTGGGATTGAATATATTTTGTGATATATTATGTGGTAGAGATAGGTACCAAGTTTGTTTTTTTTTTTTTGTTTGTCTAACTTTGTTGCAATTGCAGCGTTTAATTTTTTTGTCTCATTTTCTTTTACAAAAAACTAGCCCAACATGTCATCATTACCATGTCATCGATCTAACTTTTTGCCACTTTTTCCCACTCATAAATGCTTGTCTATCTTTTTATTATTTTCTTTTGGTATTGTGCATGAATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

290

Amino Acids

33.28

Weight (kDa)

9.25

Isoelectric Point (pI)

55.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14800 AT1G36030 AT1G67623 AT1G74875 AT2G35280 AT3G30430 AT5G17167
fragaria_vesca	FvH4_4g17961
malus_domestica	MD16G1169500.v1.1 MD16G1170100.v1.1
prunus_persica	Prupe.1G137300_v2.0.a1 Prupe.1G137300_v2.0.a1
pyrus_communis	pycom01g02790 pycom01g02800 pycom16g14270
rosa_chinensis	RchiOBHm_Chr4g0422141
rosa_laevigata	RLG00000007631
rosa_multiflora	Rmu_sc0004902.1_g000005
rosa_roxburghii	Rroxscaffold_5G00364220 Rroxscaffold_5G00364230
rosa_rugosa	Rorug04G0177600
rosa_samantha	Rh4AG237200 Rh4BG240000 Rh4CG251900 Rh4DG236100
rosa_wichuraiana	Rw4G020520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	663
AccB1I	GGYRCC	1 cut(s)	663
AccBSI	CCGCTC	1 cut(s)	165
AciI	CCGC	2 cut(s)	88, 163
AcsI	RAATTY	2 cut(s)	141, 368
AfaI	GTAC	2 cut(s)	417, 665
AfiI	CCNNNNNNNGG	2 cut(s)	321, 443
AflII	CTTAAG	1 cut(s)	379
AflIII	ACRYGT	1 cut(s)	761
AgsI	TTSAA	2 cut(s)	211, 628
AleI	CACNNNNGTG	1 cut(s)	460
AluBI	AGCT	2 cut(s)	280, 375
AluI	AGCT	2 cut(s)	280, 375
Alw21I	GWGCWC	1 cut(s)	517
Alw26I	GTCTC	4 cut(s)	202, 260, 341, 735
Alw44I	GTGCAC	1 cut(s)	513
Ama87I	CYCGRG	1 cut(s)	307
AoxI	GGCC	2 cut(s)	311, 526
ApaI	GGGCCC	1 cut(s)	530
ApaLI	GTGCAC	1 cut(s)	513
ApeKI	GCWGC	3 cut(s)	375, 574, 712
ApoI	RAATTY	2 cut(s)	141, 368
Asp718I	GGTACC	1 cut(s)	663
AspLEI	GCGC	1 cut(s)	296
AspS9I	GGNCC	5 cut(s)	175, 312, 526, 527, 597
AvaI	CYCGRG	1 cut(s)	307
AvaII	GGWCC	2 cut(s)	175, 597
BaeGI	GKGCMC	2 cut(s)	517, 530
BanI	GGYRCC	1 cut(s)	663
BanII	GRGCYC	1 cut(s)	530
BbsI	GAAGAC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	517
BbvI	GCAGC	3 cut(s)	362, 586, 724
BccI	CCATC	1 cut(s)	45
BcoDI	GTCTC	4 cut(s)	202, 260, 341, 735
BfaI	CTAG	1 cut(s)	753
BfoI	RGCGCY	1 cut(s)	297
BfrI	CTTAAG	1 cut(s)	379
BisI	GCNGC	4 cut(s)	88, 376, 575, 713
BlsI	GCNGC	4 cut(s)	89, 377, 576, 714
Bme18I	GGWCC	2 cut(s)	175, 597
BmeT110I	CYCGRG	1 cut(s)	307
BmgT120I	GGNCC	5 cut(s)	175, 312, 526, 527, 597
BmiI	GGNNCC	4 cut(s)	176, 528, 598, 665
BmsI	GCATC	2 cut(s)	21, 320
BpiI	GAAGAC	1 cut(s)	231
Bsa29I	ATCGAT	1 cut(s)	783
BsaI	GGTCTC	1 cut(s)	260
BsaJI	CCNNGG	2 cut(s)	287, 308
BsaWI	WCCGGW	1 cut(s)	599
Bsc4I	CCNNNNNNNGG	2 cut(s)	321, 443
BseCI	ATCGAT	1 cut(s)	783
BseDI	CCNNGG	2 cut(s)	287, 308
BseGI	GGATG	1 cut(s)	335
BseLI	CCNNNNNNNGG	2 cut(s)	321, 443
BseSI	GKGCMC	2 cut(s)	517, 530
BseXI	GCAGC	3 cut(s)	362, 586, 724
BshFI	GGCC	2 cut(s)	313, 528
BshNI	GGYRCC	1 cut(s)	663
BshVI	ATCGAT	1 cut(s)	783
BsiHKAI	GWGCWC	1 cut(s)	517
BsiHKCI	CYCGRG	1 cut(s)	307
BsiSI	CCGG	1 cut(s)	600
BslFI	GGGAC	1 cut(s)	188
BslI	CCNNNNNNNGG	2 cut(s)	321, 443
BsmAI	GTCTC	4 cut(s)	202, 260, 341, 735
BsmFI	GGGAC	1 cut(s)	188
BsnI	GGCC	2 cut(s)	313, 528
Bso31I	GGTCTC	1 cut(s)	260
BsoBI	CYCGRG	1 cut(s)	307
Bsp120I	GGGCCC	1 cut(s)	526
Bsp1286I	GDGCHC	2 cut(s)	517, 530
Bsp143I	GATC	2 cut(s)	424, 784
Bsp19I	CCATGG	1 cut(s)	287
BspACI	CCGC	2 cut(s)	88, 163
BspANI	GGCC	2 cut(s)	313, 528
BspDI	ATCGAT	1 cut(s)	783
BspLI	GGNNCC	4 cut(s)	176, 528, 598, 665
BspT107I	GGYRCC	1 cut(s)	663
BspTI	CTTAAG	1 cut(s)	379
BspTNI	GGTCTC	1 cut(s)	260
BsrBI	CCGCTC	1 cut(s)	165
BssECI	CCNNGG	2 cut(s)	287, 308
BssMI	GATC	2 cut(s)	424, 784
BssT1I	CCWWGG	1 cut(s)	287
Bst4CI	ACNGT	5 cut(s)	230, 271, 420, 519, 558
BstAFI	CTTAAG	1 cut(s)	379
BstAPI	GCANNNNNTGC	1 cut(s)	18
BstDEI	CTNAG	2 cut(s)	105, 281
BstDSI	CCRYGG	1 cut(s)	287
BstF5I	GGATG	1 cut(s)	335
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	1 cut(s)	296
BstKTI	GATC	2 cut(s)	427, 787
BstMAI	GTCTC	4 cut(s)	202, 260, 341, 735
BstMBI	GATC	2 cut(s)	424, 784
BstMWI	GCNNNNNNNGC	2 cut(s)	18, 712
BstNSI	RCATGY	1 cut(s)	765
BstSLI	GKGCMC	2 cut(s)	517, 530
BstV1I	GCAGC	3 cut(s)	362, 586, 724
BstV2I	GAAGAC	1 cut(s)	231
Bsu15I	ATCGAT	1 cut(s)	783
BsuRI	GGCC	2 cut(s)	313, 528
BsuTUI	ATCGAT	1 cut(s)	783
BtgI	CCRYGG	1 cut(s)	287
BtsCI	GGATG	1 cut(s)	335
BtsIMutI	CAGTG	1 cut(s)	524
CfoI	GCGC	1 cut(s)	296
Cfr13I	GGNCC	5 cut(s)	175, 312, 526, 527, 597
ClaI	ATCGAT	1 cut(s)	783
Csp6I	GTAC	2 cut(s)	416, 664
CviAII	CATG	6 cut(s)	22, 288, 321, 762, 776, 859
CviJI	RGCY	8 cut(s)	87, 221, 280, 313, 364, 375, 528, 756
CviKI_1	RGCY	8 cut(s)	87, 221, 280, 313, 364, 375, 528, 756
CviQI	GTAC	2 cut(s)	416, 664
DdeI	CTNAG	2 cut(s)	105, 281
DpnI	GATC	2 cut(s)	426, 786
DpnII	GATC	2 cut(s)	424, 784
Eco130I	CCWWGG	1 cut(s)	287
Eco24I	GRGCYC	1 cut(s)	530
Eco31I	GGTCTC	1 cut(s)	260
Eco47I	GGWCC	2 cut(s)	175, 597
Eco88I	CYCGRG	1 cut(s)	307
EcoO109I	RGGNCCY	3 cut(s)	175, 312, 526
EcoT14I	CCWWGG	1 cut(s)	287
EcoT38I	GRGCYC	1 cut(s)	530
ErhI	CCWWGG	1 cut(s)	287
FaeI	CATG	6 cut(s)	25, 291, 324, 765, 779, 862
FaqI	GGGAC	1 cut(s)	188
FatI	CATG	6 cut(s)	21, 287, 320, 761, 775, 858
FauI	CCCGC	1 cut(s)	170
Fnu4HI	GCNGC	4 cut(s)	88, 376, 575, 713
FokI	GGATG	1 cut(s)	342
FriOI	GRGCYC	1 cut(s)	530
Fsp4HI	GCNGC	4 cut(s)	88, 376, 575, 713
FspBI	CTAG	1 cut(s)	753
GlaI	GCGC	1 cut(s)	295
GluI	GCNGC	4 cut(s)	88, 376, 575, 713
HaeII	RGCGCY	1 cut(s)	297
HaeIII	GGCC	2 cut(s)	313, 528
HapII	CCGG	1 cut(s)	600
HhaI	GCGC	1 cut(s)	296
Hin1II	CATG	6 cut(s)	25, 291, 324, 765, 779, 862
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HinfI	GANTC	1 cut(s)	532
HpaII	CCGG	1 cut(s)	600
Hpy166II	GTNNAC	4 cut(s)	274, 416, 515, 591
Hpy188I	TCNGA	2 cut(s)	346, 612
Hpy8I	GTNNAC	4 cut(s)	274, 416, 515, 591
HpyAV	CCTTC	1 cut(s)	453
HpyCH4III	ACNGT	5 cut(s)	230, 271, 420, 519, 558
HpyCH4IV	ACGT	1 cut(s)	129
HpyF10VI	GCNNNNNNNGC	2 cut(s)	18, 712
HpyF3I	CTNAG	2 cut(s)	105, 281
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	6 cut(s)	25, 291, 324, 765, 779, 862
HspAI	GCGC	1 cut(s)	294
KpnI	GGTACC	1 cut(s)	667
Kzo9I	GATC	2 cut(s)	424, 784
LpnPI	CCDG	4 cut(s)	290, 425, 579, 613
Lsp1109I	GCAGC	3 cut(s)	362, 586, 724
LweI	GCATC	2 cut(s)	21, 320
MaeI	CTAG	1 cut(s)	753
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	2 cut(s)	230, 602
MalI	GATC	2 cut(s)	426, 786
MbiI	CCGCTC	1 cut(s)	165
MboI	GATC	2 cut(s)	424, 784
MboII	GAAGA	3 cut(s)	125, 236, 370
MfeI	CAATTG	1 cut(s)	707
MhlI	GDGCHC	2 cut(s)	517, 530
MluCI	AATT	4 cut(s)	141, 368, 707, 720
MnlI	CCTC	6 cut(s)	112, 188, 303, 325, 475, 546
MseI	TTAA	4 cut(s)	45, 170, 380, 719
MslI	CAYNNNNRTG	2 cut(s)	460, 774
MspCI	CTTAAG	1 cut(s)	379
MspI	CCGG	1 cut(s)	600
MunI	CAATTG	1 cut(s)	707
MwoI	GCNNNNNNNGC	2 cut(s)	18, 712
NcoI	CCATGG	1 cut(s)	287
NdeII	GATC	2 cut(s)	424, 784
NlaIII	CATG	6 cut(s)	25, 291, 324, 765, 779, 862
NlaIV	GGNNCC	4 cut(s)	176, 528, 598, 665
NmeAIII	GCCGAG	1 cut(s)	501
NmuCI	GTSAC	2 cut(s)	230, 602
NspI	RCATGY	1 cut(s)	765
OliI	CACNNNNGTG	1 cut(s)	460
PciI	ACATGT	1 cut(s)	761
PfeI	GAWTC	1 cut(s)	532
PkrI	GCNGC	4 cut(s)	89, 377, 576, 714
PpuMI	RGGWCCY	1 cut(s)	175
PscI	ACATGT	1 cut(s)	761
Psp5II	RGGWCCY	1 cut(s)	175
PspN4I	GGNNCC	4 cut(s)	176, 528, 598, 665
PspOMI	GGGCCC	1 cut(s)	526
PspPI	GGNCC	5 cut(s)	175, 312, 526, 527, 597
PspPPI	RGGWCCY	1 cut(s)	175
RsaI	GTAC	2 cut(s)	417, 665
RsaNI	GTAC	2 cut(s)	416, 664
RseI	CAYNNNNRTG	2 cut(s)	460, 774
SaqAI	TTAA	4 cut(s)	45, 170, 380, 719
SatI	GCNGC	4 cut(s)	88, 376, 575, 713
Sau3AI	GATC	2 cut(s)	424, 784
Sau96I	GGNCC	5 cut(s)	175, 312, 526, 527, 597
SduI	GDGCHC	2 cut(s)	517, 530
SfaNI	GCATC	2 cut(s)	21, 320
SinI	GGWCC	2 cut(s)	175, 597
SmiMI	CAYNNNNRTG	2 cut(s)	460, 774
SmlI	CTYRAG	1 cut(s)	379
SmoI	CTYRAG	1 cut(s)	379
Sse9I	AATT	4 cut(s)	141, 368, 707, 720
SsiI	CCGC	2 cut(s)	88, 163
SspI	AATATT	1 cut(s)	253
SspMI	CTAG	1 cut(s)	753
StyI	CCWWGG	1 cut(s)	287
TaaI	ACNGT	5 cut(s)	230, 271, 420, 519, 558
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	2 cut(s)	185, 783
TasI	AATT	4 cut(s)	141, 368, 707, 720
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	532
Tru1I	TTAA	4 cut(s)	45, 170, 380, 719
Tru9I	TTAA	4 cut(s)	45, 170, 380, 719
TscAI	CASTG	1 cut(s)	524
TseFI	GTSAC	2 cut(s)	230, 602
TseI	GCWGC	3 cut(s)	375, 574, 712
Tsp45I	GTSAC	2 cut(s)	230, 602
TspDTI	ATGAA	1 cut(s)	59
TspRI	CASTG	1 cut(s)	524
Vha464I	CTTAAG	1 cut(s)	379
VneI	GTGCAC	1 cut(s)	513
VpaK11BI	GGWCC	2 cut(s)	175, 597
XapI	RAATTY	2 cut(s)	141, 368
XceI	RCATGY	1 cut(s)	765
XspI	CTAG	1 cut(s)	753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.