Prupe.1G137300_v2.0.a1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0006630
Physical Location & Seq
Reverse (-)
10755768 .. 10757943
2176 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G137300.2

Sequence Viewer

Length: 765 bp
ATGGCGCCTCTCACAAGGTCAATGAAGAAGAAAGCCGCAAACAGCAAGAGTCGCATCATGCAATCCCTTCCGAAGGAGCTTTTGGTAGAAGTTCTTGCAAAGGTGGCTTCGAATTCTTTCAACGATCTCTACTCGGCAAAGTTAAGCTGCAAGGACTTCAACAAAATGGCTGAAGAAGACTACATATTCCAGTGCATTGACATCAGCAAATTCCCATTGGTTTCTTGGAGGTTTGACGACAAATTCTCCAAGTTTCTGAAACACTGCAAAAAGTGCGGCAACGCGGAGGCCTTGTACCGACAAGGGCTTCGCGATCTTTTCAGAGGCAAGAGGGTGCAACAAGGAATCATGTGTCTGAAGAAAGCAGCCTCGAAGGGTCATGTAGAAGCGACGTATGTTTACGGCGCCATCTTGGTGTGTTTCGGGGGAGAGTCGAAGCAGGAAGGCCTGGAGCTTCTGTATTCTCTCAATCATTACAAACCGAAAGGATTCAGCGTAAGAGAATGCAGGGAGAAGGTTAAGGGACTTGTTTGGAACATGTGGGCTGACAGGAAGGTGGTGGGTAAAATTGTACAAGCCCGCCATGAGACTGCCATTGCGAAAACATGCAGCGATTGTGGAAATAGACAGGAGGTTTTCACAGTCGAGCGAGGATGGGATCCTCTTGATCATGAAAATTTCAGCAGCTGCAATACCTGCAGGTGGCATCAAGAAGTTAATATTTTCCGTGATATATTAAACGACAGTTGCACCCCTCTGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

255

Amino Acids

29.16

Weight (kDa)

9.19

Isoelectric Point (pI)

37.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 690
Acc36I ACCTGC 2 cut(s) 690, 704
AccB1I GGYRCC 2 cut(s) 4, 404
AccII CGCG 2 cut(s) 284, 312
AciI CCGC 4 cut(s) 36, 276, 284, 580
AclWI GGATC 2 cut(s) 653, 666
AcsI RAATTY 4 cut(s) 112, 209, 242, 676
AcuI CTGAAG 2 cut(s) 192, 377
AcyI GRCGYC 2 cut(s) 5, 405
AfaI GTAC 2 cut(s) 296, 573
AfiI CCNNNNNNNGG 2 cut(s) 73, 702
AflIII ACRYGT 1 cut(s) 537
AgsI TTSAA 2 cut(s) 121, 160
AjnI CCWGG 1 cut(s) 447
AjuI GAANNNNNNNTTGG 2 cut(s) 65, 97
AluBI AGCT 4 cut(s) 79, 147, 454, 687
AluI AGCT 4 cut(s) 79, 147, 454, 687
Alw26I GTCTC 1 cut(s) 581
AlwI GGATC 2 cut(s) 653, 666
AlwNI CAGNNNCTG 1 cut(s) 687
AoxI GGCC 2 cut(s) 288, 445
ApeKI GCWGC 5 cut(s) 147, 365, 609, 684, 687
ApoI RAATTY 4 cut(s) 112, 209, 242, 676
ArsI GACNNNNNNTTYG 2 cut(s) 291, 323
Asp700I GAANNNNTTC 2 cut(s) 116, 488
AspLEI GCGC 2 cut(s) 7, 407
AsuII TTCGAA 1 cut(s) 110
BamHI GGATCC 1 cut(s) 658
BanI GGYRCC 2 cut(s) 4, 404
BbsI GAAGAC 1 cut(s) 183
BbvI GCAGC 5 cut(s) 134, 377, 621, 674, 696
BccI CCATC 2 cut(s) 416, 648
BceAI ACGGC 1 cut(s) 418
BciT130I CCWGG 1 cut(s) 449
BclI TGATCA 1 cut(s) 667
BcoDI GTCTC 1 cut(s) 581
BfmI CTRYAG 1 cut(s) 697
BfoI RGCGCY 2 cut(s) 8, 408
BfuAI ACCTGC 2 cut(s) 690, 704
BisI GCNGC 7 cut(s) 36, 148, 277, 366, 610, 685, 688
BlsI GCNGC 7 cut(s) 37, 149, 278, 367, 611, 686, 689
Bme1390I CCNGG 1 cut(s) 449
BmiI GGNNCC 3 cut(s) 6, 406, 660
BmrFI CCNGG 1 cut(s) 449
BmsI GCATC 2 cut(s) 63, 715
BpiI GAAGAC 1 cut(s) 183
BpmI CTGGAG 1 cut(s) 470
Bpu14I TTCGAA 1 cut(s) 110
BsaHI GRCGYC 2 cut(s) 5, 405
BsaXI ACNNNNNCTCC 6 cut(s) 230, 260, 278, 308, 443, 473
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 702
Bse1I ACTGG 1 cut(s) 190
Bse3DI GCAATG 1 cut(s) 594
BseBI CCWGG 1 cut(s) 449
BseGI GGATG 1 cut(s) 659
BseLI CCNNNNNNNGG 2 cut(s) 73, 702
BseMI GCAATG 1 cut(s) 594
BseNI ACTGG 1 cut(s) 190
BseXI GCAGC 5 cut(s) 134, 377, 621, 674, 696
Bsh1236I CGCG 2 cut(s) 284, 312
BshFI GGCC 2 cut(s) 290, 447
BshNI GGYRCC 2 cut(s) 4, 404
BslFI GGGAC 1 cut(s) 537
BslI CCNNNNNNNGG 2 cut(s) 73, 702
BsmAI GTCTC 1 cut(s) 581
BsmFI GGGAC 1 cut(s) 537
BsmI GAATGC 1 cut(s) 509
BsnI GGCC 2 cut(s) 290, 447
Bsp119I TTCGAA 1 cut(s) 110
Bsp1407I TGTACA 1 cut(s) 571
Bsp143I GATC 4 cut(s) 124, 313, 658, 667
Bsp68I TCGCGA 1 cut(s) 312
BspACI CCGC 4 cut(s) 36, 276, 284, 580
BspANI GGCC 2 cut(s) 290, 447
BspFNI CGCG 2 cut(s) 284, 312
BspHI TCATGA 1 cut(s) 670
BspLI GGNNCC 3 cut(s) 6, 406, 660
BspMAI CTGCAG 1 cut(s) 701
BspMI ACCTGC 2 cut(s) 690, 704
BspPI GGATC 2 cut(s) 653, 666
BspT104I TTCGAA 1 cut(s) 110
BspT107I GGYRCC 2 cut(s) 4, 404
BsrDI GCAATG 1 cut(s) 594
BsrGI TGTACA 1 cut(s) 571
BsrI ACTGG 1 cut(s) 190
BssMI GATC 4 cut(s) 124, 313, 658, 667
BssNI GRCGYC 2 cut(s) 5, 405
Bst2UI CCWGG 1 cut(s) 449
Bst4CI ACNGT 2 cut(s) 643, 746
BstACI GRCGYC 2 cut(s) 5, 405
BstAPI GCANNNNNTGC 2 cut(s) 273, 696
BstAUI TGTACA 1 cut(s) 571
BstBI TTCGAA 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 580
BstENI CCTNNNNNAGG 1 cut(s) 71
BstF5I GGATG 1 cut(s) 659
BstFNI CGCG 2 cut(s) 284, 312
BstH2I RGCGCY 2 cut(s) 8, 408
BstHHI GCGC 2 cut(s) 7, 407
BstKTI GATC 4 cut(s) 127, 316, 661, 670
BstMAI GTCTC 1 cut(s) 581
BstMBI GATC 4 cut(s) 124, 313, 658, 667
BstMWI GCNNNNNNNGC 4 cut(s) 51, 104, 273, 696
BstNI CCWGG 1 cut(s) 449
BstNSI RCATGY 2 cut(s) 541, 609
BstSCI CCNGG 1 cut(s) 447
BstSFI CTRYAG 1 cut(s) 697
BstUI CGCG 2 cut(s) 284, 312
BstV1I GCAGC 5 cut(s) 134, 377, 621, 674, 696
BstV2I GAAGAC 1 cut(s) 183
BstX2I RGATCY 1 cut(s) 658
BstYI RGATCY 1 cut(s) 658
BsuRI GGCC 2 cut(s) 290, 447
BtsCI GGATG 1 cut(s) 659
BtsI GCAGTG 1 cut(s) 262
BtsIMutI CAGTG 2 cut(s) 197, 262
BtuMI TCGCGA 1 cut(s) 312
BveI ACCTGC 2 cut(s) 690, 704
Cac8I GCNNGC 1 cut(s) 580
CaiI CAGNNNCTG 1 cut(s) 687
CciI TCATGA 1 cut(s) 670
CfoI GCGC 2 cut(s) 7, 407
Csp6I GTAC 2 cut(s) 295, 572
CviAII CATG 7 cut(s) 58, 349, 380, 538, 584, 606, 671
CviQI GTAC 2 cut(s) 295, 572
DinI GGCGCC 2 cut(s) 6, 406
DpnI GATC 4 cut(s) 126, 315, 660, 669
DpnII GATC 4 cut(s) 124, 313, 658, 667
Eco147I AGGCCT 2 cut(s) 290, 447
Eco57I CTGAAG 2 cut(s) 192, 377
EcoNI CCTNNNNNAGG 1 cut(s) 71
EcoRI GAATTC 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 447
EgeI GGCGCC 2 cut(s) 6, 406
EheI GGCGCC 2 cut(s) 6, 406
FaeI CATG 7 cut(s) 61, 352, 383, 541, 587, 609, 674
FaqI GGGAC 1 cut(s) 537
FatI CATG 7 cut(s) 57, 348, 379, 537, 583, 605, 670
FauI CCCGC 1 cut(s) 587
FbaI TGATCA 1 cut(s) 667
Fnu4HI GCNGC 7 cut(s) 36, 148, 277, 366, 610, 685, 688
FokI GGATG 1 cut(s) 666
Fsp4HI GCNGC 7 cut(s) 36, 148, 277, 366, 610, 685, 688
GlaI GCGC 2 cut(s) 6, 406
GluI GCNGC 7 cut(s) 36, 148, 277, 366, 610, 685, 688
GsuI CTGGAG 1 cut(s) 470
HaeII RGCGCY 2 cut(s) 8, 408
HaeIII GGCC 2 cut(s) 290, 447
HhaI GCGC 2 cut(s) 7, 407
Hin1I GRCGYC 2 cut(s) 5, 405
Hin1II CATG 7 cut(s) 61, 352, 383, 541, 587, 609, 674
Hin6I GCGC 2 cut(s) 5, 405
HinP1I GCGC 2 cut(s) 5, 405
HinfI GANTC 4 cut(s) 49, 345, 431, 489
Hpy166II GTNNAC 1 cut(s) 400
Hpy188I TCNGA 4 cut(s) 72, 258, 323, 357
Hpy188III TCNNGA 4 cut(s) 311, 665, 671, 710
Hpy8I GTNNAC 1 cut(s) 400
Hpy99I CGWCG 1 cut(s) 394
HpyAV CCTTC 6 cut(s) 67, 77, 367, 437, 508, 547
HpyCH4III ACNGT 2 cut(s) 643, 746
HpyCH4IV ACGT 1 cut(s) 392
HpyF10VI GCNNNNNNNGC 4 cut(s) 51, 104, 273, 696
HpySE526I ACGT 1 cut(s) 392
Hsp92I GRCGYC 2 cut(s) 5, 405
Hsp92II CATG 7 cut(s) 61, 352, 383, 541, 587, 609, 674
HspAI GCGC 2 cut(s) 5, 405
KasI GGCGCC 2 cut(s) 4, 404
Ksp22I TGATCA 1 cut(s) 667
Kzo9I GATC 4 cut(s) 124, 313, 658, 667
LmnI GCTCC 2 cut(s) 76, 451
LpnPI CCDG 9 cut(s) 203, 425, 434, 461, 493, 535, 614, 685, 709
Lsp1109I GCAGC 5 cut(s) 134, 377, 621, 674, 696
LweI GCATC 2 cut(s) 63, 715
MaeII ACGT 1 cut(s) 392
MalI GATC 4 cut(s) 126, 315, 660, 669
MboI GATC 4 cut(s) 124, 313, 658, 667
MboII GAAGA 5 cut(s) 37, 40, 185, 188, 370
MflI RGATCY 1 cut(s) 658
MluCI AATT 5 cut(s) 112, 209, 242, 567, 676
Mly113I GGCGCC 2 cut(s) 5, 405
MlyI GAGTC 2 cut(s) 58, 440
MroXI GAANNNNTTC 2 cut(s) 116, 488
MseI TTAA 4 cut(s) 143, 519, 717, 737
MslI CAYNNNNRTG 1 cut(s) 413
MspA1I CMGCKG 1 cut(s) 687
MspR9I CCNGG 1 cut(s) 449
Mva1269I GAATGC 1 cut(s) 509
MvaI CCWGG 1 cut(s) 449
MvnI CGCG 2 cut(s) 284, 312
MwoI GCNNNNNNNGC 4 cut(s) 51, 104, 273, 696
NarI GGCGCC 2 cut(s) 5, 405
NdeII GATC 4 cut(s) 124, 313, 658, 667
NlaIII CATG 7 cut(s) 61, 352, 383, 541, 587, 609, 674
NlaIV GGNNCC 3 cut(s) 6, 406, 660
NmeAIII GCCGAG 1 cut(s) 113
NruI TCGCGA 1 cut(s) 312
NspI RCATGY 2 cut(s) 541, 609
NspV TTCGAA 1 cut(s) 110
PagI TCATGA 1 cut(s) 670
PaqCI CACCTGC 1 cut(s) 690
PceI AGGCCT 2 cut(s) 290, 447
PciI ACATGT 1 cut(s) 537
PctI GAATGC 1 cut(s) 509
PdmI GAANNNNTTC 2 cut(s) 116, 488
PfeI GAWTC 2 cut(s) 345, 489
PkrI GCNGC 7 cut(s) 37, 149, 278, 367, 611, 686, 689
PleI GAGTC 2 cut(s) 57, 439
PluTI GGCGCC 2 cut(s) 8, 408
PpsI GAGTC 2 cut(s) 57, 439
PscI ACATGT 1 cut(s) 537
Psp6I CCWGG 1 cut(s) 447
PspGI CCWGG 1 cut(s) 447
PspN4I GGNNCC 3 cut(s) 6, 406, 660
PstI CTGCAG 1 cut(s) 701
PstNI CAGNNNCTG 1 cut(s) 687
PsuI RGATCY 1 cut(s) 658
PvuII CAGCTG 1 cut(s) 687
RruI TCGCGA 1 cut(s) 312
RsaI GTAC 2 cut(s) 296, 573
RsaNI GTAC 2 cut(s) 295, 572
RseI CAYNNNNRTG 1 cut(s) 413
SaqAI TTAA 4 cut(s) 143, 519, 717, 737
SatI GCNGC 7 cut(s) 36, 148, 277, 366, 610, 685, 688
Sau3AI GATC 4 cut(s) 124, 313, 658, 667
SbfI CCTGCAGG 1 cut(s) 701
SchI GAGTC 2 cut(s) 58, 440
ScrFI CCNGG 1 cut(s) 449
SdaI CCTGCAGG 1 cut(s) 701
SfaNI GCATC 2 cut(s) 63, 715
SfcI CTRYAG 1 cut(s) 697
SfoI GGCGCC 2 cut(s) 6, 406
SfuI TTCGAA 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 413
Sse8387I CCTGCAGG 1 cut(s) 701
Sse9I AATT 5 cut(s) 112, 209, 242, 567, 676
SseBI AGGCCT 2 cut(s) 290, 447
SsiI CCGC 4 cut(s) 36, 276, 284, 580
SspDI GGCGCC 2 cut(s) 4, 404
SspI AATATT 1 cut(s) 721
StuI AGGCCT 2 cut(s) 290, 447
StyD4I CCNGG 1 cut(s) 447
TaaI ACNGT 2 cut(s) 643, 746
TaiI ACGT 1 cut(s) 395
TaqI TCGA 4 cut(s) 110, 371, 434, 645
TasI AATT 5 cut(s) 112, 209, 242, 567, 676
TatI WGTACW 1 cut(s) 571
TauI GCSGC 2 cut(s) 38, 279
TfiI GAWTC 2 cut(s) 345, 489
Tru1I TTAA 4 cut(s) 143, 519, 717, 737
Tru9I TTAA 4 cut(s) 143, 519, 717, 737
TscAI CASTG 2 cut(s) 197, 269
TseI GCWGC 5 cut(s) 147, 365, 609, 684, 687
TspDTI ATGAA 2 cut(s) 38, 687
TspGWI ACGGA 1 cut(s) 716
TspRI CASTG 2 cut(s) 197, 269
XagI CCTNNNNNAGG 1 cut(s) 71
XapI RAATTY 4 cut(s) 112, 209, 242, 676
XceI RCATGY 2 cut(s) 541, 609
XcmI CCANNNNNNNNNTGG 1 cut(s) 222
XmnI GAANNNNTTC 2 cut(s) 116, 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.