FvH4_4g17961

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0006630
Physical Location & Seq
Forward (+)
21936172 .. 21942192
6021 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g17961.t1

Sequence Viewer

Length: 645 bp
ATGGCGACTCTCTCAATAACAAGGAACAAGAAGGTTAGGAAGAATAGGAACTCAAGAAAGGGTGGCTCGGTTTTGAAGTCACTTCCCAATGAGCTGCTGCTCGAAGTGATTGCTAAGGAATTCGATTTCGAATCGGGATTCGAGTGTTTGAAGAAAGATGCAGCAAGAGGTCACAGAGAAGCAACGTATGTTTATGGGGTGTTCTTGGCTTGTGTAGGAGGTGAGATGAAGCAACAAGATTTACGATCCTTGTGTAGTCTAGGTCGTAAAGATTTGCGTGAATCAAGAGAAAGGATTATGACTTGCATTGGGAGTATGTGGGTGAACAAAGTAGTAGTACGTAAAATGCTTGCCTATAATGCTCGTGATAAAACATGCGGCCAATGTGGAAATTTTCGGGATAATAATTTTGTGACTAAAGGAGGCTGGGACGACCATTATGATGAGGGTGACAATCTAAATGGGTGTGATTCATGCAAGATGAATCAAGAAATTCCATGGGCTCTGGTTCGGGCACTTCAAAGCACACTGCCTCTCCTGAGGCAGATGGGGAGTAGTTACCTTGGGGAAGGAACAAAGATCAAGGTGATCCCCTCATTGATGAACAAGTACACTGCCTCTCCTGCTTCTCCCTACACAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

215

Amino Acids

24.06

Weight (kDa)

9.34

Isoelectric Point (pI)

44.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_27 PF23310 42 - 102 1.3e-11 Plant tetratrico peptide repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 378
AclWI GGATC 2 cut(s) 240, 583
AcoI YGGCCR 1 cut(s) 379
AcsI RAATTY 3 cut(s) 119, 391, 492
AfaI GTAC 2 cut(s) 339, 611
AgsI TTSAA 3 cut(s) 76, 151, 521
AluBI AGCT 1 cut(s) 94
AluI AGCT 1 cut(s) 94
AlwI GGATC 2 cut(s) 240, 583
AoxI GGCC 1 cut(s) 379
ApeKI GCWGC 3 cut(s) 94, 97, 161
ApoI RAATTY 3 cut(s) 119, 391, 492
AsuHPI GGTGA 4 cut(s) 233, 334, 461, 598
AsuII TTCGAA 1 cut(s) 129
AxyI CCTNAGG 1 cut(s) 539
BaeGI GKGCMC 1 cut(s) 517
BanII GRGCYC 1 cut(s) 505
BauI CACGAG 1 cut(s) 363
BbvI GCAGC 3 cut(s) 81, 84, 173
BccI CCATC 1 cut(s) 541
BcgI CGANNNNNNTGC 2 cut(s) 92, 126
BfaI CTAG 1 cut(s) 260
BisI GCNGC 4 cut(s) 95, 98, 162, 379
BlsI GCNGC 4 cut(s) 96, 99, 163, 380
BmsI GCATC 1 cut(s) 148
Bpu10I CCTNAGC 1 cut(s) 114
Bpu14I TTCGAA 1 cut(s) 129
BpuEI CTTGAG 1 cut(s) 37
BsaAI YACGTR 1 cut(s) 341
BsaJI CCNNGG 2 cut(s) 497, 562
BsaXI ACNNNNNCTCC 4 cut(s) 519, 549, 604, 634
Bse21I CCTNAGG 1 cut(s) 539
BseDI CCNNGG 2 cut(s) 497, 562
BseMII CTCAG 1 cut(s) 530
BseSI GKGCMC 1 cut(s) 517
BseXI GCAGC 3 cut(s) 81, 84, 173
BseYI CCCAGC 1 cut(s) 426
BshFI GGCC 1 cut(s) 381
BslFI GGGAC 1 cut(s) 443
BsmFI GGGAC 1 cut(s) 443
BsnI GGCC 1 cut(s) 381
Bsp119I TTCGAA 1 cut(s) 129
Bsp1286I GDGCHC 2 cut(s) 505, 517
Bsp143I GATC 3 cut(s) 245, 579, 588
Bsp19I CCATGG 1 cut(s) 497
BspACI CCGC 1 cut(s) 378
BspANI GGCC 1 cut(s) 381
BspCNI CTCAG 1 cut(s) 531
BspPI GGATC 2 cut(s) 240, 583
BspT104I TTCGAA 1 cut(s) 129
BssECI CCNNGG 2 cut(s) 497, 562
BssMI GATC 3 cut(s) 245, 579, 588
BssSI CACGAG 1 cut(s) 363
BssT1I CCWWGG 2 cut(s) 497, 562
Bst2BI CACGAG 1 cut(s) 363
BstBAI YACGTR 1 cut(s) 341
BstBI TTCGAA 1 cut(s) 129
BstC8I GCNNGC 1 cut(s) 351
BstDEI CTNAG 2 cut(s) 114, 539
BstDSI CCRYGG 1 cut(s) 497
BstKTI GATC 3 cut(s) 248, 582, 591
BstMBI GATC 3 cut(s) 245, 579, 588
BstMWI GCNNNNNNNGC 2 cut(s) 359, 623
BstNSI RCATGY 1 cut(s) 378
BstSLI GKGCMC 1 cut(s) 517
BstSNI TACGTA 1 cut(s) 341
BstV1I GCAGC 3 cut(s) 81, 84, 173
Bsu36I CCTNAGG 1 cut(s) 539
BsuRI GGCC 1 cut(s) 381
BtgI CCRYGG 1 cut(s) 497
BtsI GCAGTG 2 cut(s) 527, 612
BtsIMutI CAGTG 2 cut(s) 527, 612
Cac8I GCNNGC 1 cut(s) 351
Csp6I GTAC 2 cut(s) 338, 610
CviAII CATG 3 cut(s) 375, 474, 498
CviJI RGCY 6 cut(s) 66, 94, 209, 381, 426, 503
CviKI_1 RGCY 6 cut(s) 66, 94, 209, 381, 426, 503
CviQI GTAC 2 cut(s) 338, 610
DdeI CTNAG 2 cut(s) 114, 539
DpnI GATC 3 cut(s) 247, 581, 590
DpnII GATC 3 cut(s) 245, 579, 588
EaeI YGGCCR 1 cut(s) 379
Eco105I TACGTA 1 cut(s) 341
Eco130I CCWWGG 2 cut(s) 497, 562
Eco24I GRGCYC 1 cut(s) 505
Eco81I CCTNAGG 1 cut(s) 539
EcoRI GAATTC 1 cut(s) 119
EcoT14I CCWWGG 2 cut(s) 497, 562
EcoT38I GRGCYC 1 cut(s) 505
ErhI CCWWGG 2 cut(s) 497, 562
FaeI CATG 3 cut(s) 378, 477, 501
FaiI YATR 9 cut(s) 189, 195, 299, 317, 357, 376, 441, 475, 499
FaqI GGGAC 1 cut(s) 443
FatI CATG 3 cut(s) 374, 473, 497
Fnu4HI GCNGC 4 cut(s) 95, 98, 162, 379
FriOI GRGCYC 1 cut(s) 505
Fsp4HI GCNGC 4 cut(s) 95, 98, 162, 379
FspBI CTAG 1 cut(s) 260
GluI GCNGC 4 cut(s) 95, 98, 162, 379
GsaI CCCAGC 1 cut(s) 430
HaeIII GGCC 1 cut(s) 381
Hin1II CATG 3 cut(s) 378, 477, 501
HinfI GANTC 6 cut(s) 7, 131, 138, 281, 470, 484
HphI GGTGA 4 cut(s) 233, 334, 461, 598
Hpy166II GTNNAC 2 cut(s) 325, 612
Hpy188III TCNNGA 7 cut(s) 54, 135, 285, 365, 398, 488, 538
Hpy8I GTNNAC 2 cut(s) 325, 612
HpyAV CCTTC 2 cut(s) 25, 563
HpyCH4IV ACGT 2 cut(s) 185, 340
HpyCH4V TGCA 3 cut(s) 161, 306, 477
HpyF10VI GCNNNNNNNGC 2 cut(s) 359, 623
HpyF3I CTNAG 2 cut(s) 114, 539
HpySE526I ACGT 2 cut(s) 185, 340
Hsp92II CATG 3 cut(s) 378, 477, 501
Kzo9I GATC 3 cut(s) 245, 579, 588
LpnPI CCDG 4 cut(s) 412, 491, 551, 636
Lsp1109I GCAGC 3 cut(s) 81, 84, 173
LweI GCATC 1 cut(s) 148
MaeI CTAG 1 cut(s) 260
MaeII ACGT 2 cut(s) 185, 340
MaeIII GTNAC 5 cut(s) 78, 170, 412, 449, 557
MalI GATC 3 cut(s) 247, 581, 590
MboI GATC 3 cut(s) 245, 579, 588
MboII GAAGA 2 cut(s) 52, 163
MhlI GDGCHC 2 cut(s) 505, 517
MluCI AATT 5 cut(s) 119, 391, 406, 492, 640
MnlI CCTC 8 cut(s) 161, 212, 416, 439, 534, 543, 604, 628
MslI CAYNNNNRTG 1 cut(s) 441
MwoI GCNNNNNNNGC 2 cut(s) 359, 623
NcoI CCATGG 1 cut(s) 497
NdeII GATC 3 cut(s) 245, 579, 588
NlaIII CATG 3 cut(s) 378, 477, 501
NmuCI GTSAC 4 cut(s) 78, 170, 412, 449
NspI RCATGY 1 cut(s) 378
NspV TTCGAA 1 cut(s) 129
PfeI GAWTC 5 cut(s) 131, 138, 281, 470, 484
PkrI GCNGC 4 cut(s) 96, 99, 163, 380
Ppu21I YACGTR 1 cut(s) 341
PspFI CCCAGC 1 cut(s) 426
RsaI GTAC 2 cut(s) 339, 611
RsaNI GTAC 2 cut(s) 338, 610
RseI CAYNNNNRTG 1 cut(s) 441
SatI GCNGC 4 cut(s) 95, 98, 162, 379
Sau3AI GATC 3 cut(s) 245, 579, 588
SduI GDGCHC 2 cut(s) 505, 517
SetI ASST 9 cut(s) 36, 96, 172, 188, 223, 265, 343, 564, 588
SfaNI GCATC 1 cut(s) 148
SfuI TTCGAA 1 cut(s) 129
SmiMI CAYNNNNRTG 1 cut(s) 441
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
SnaBI TACGTA 1 cut(s) 341
Sse9I AATT 5 cut(s) 119, 391, 406, 492, 640
SsiI CCGC 1 cut(s) 378
SspMI CTAG 1 cut(s) 260
StyI CCWWGG 2 cut(s) 497, 562
TaiI ACGT 2 cut(s) 188, 343
TaqI TCGA 4 cut(s) 102, 123, 129, 141
TasI AATT 5 cut(s) 119, 391, 406, 492, 640
TatI WGTACW 1 cut(s) 609
TauI GCSGC 1 cut(s) 381
TfiI GAWTC 5 cut(s) 131, 138, 281, 470, 484
TscAI CASTG 2 cut(s) 534, 619
TseFI GTSAC 4 cut(s) 78, 170, 412, 449
TseI GCWGC 3 cut(s) 94, 97, 161
Tsp45I GTSAC 4 cut(s) 78, 170, 412, 449
TspDTI ATGAA 4 cut(s) 242, 462, 497, 617
TspRI CASTG 2 cut(s) 534, 619
XapI RAATTY 3 cut(s) 119, 391, 492
XceI RCATGY 1 cut(s) 378
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.