AT1G67623

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006630
Physical Location & Seq
Forward (+)
25342101 .. 25343243
1143 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G67623.1

Sequence Viewer

Length: 891 bp
ATGGTGGTATCCTTGTCTTTGCATGCGTCTTCTTCTATTAGGAAATCGAAAACAAAAGCAAGCTTATGTCTCGATTCTTTACCAGAAGATCTTCTCGTGGAGATTTCTTCATGTACCGGAGCTTCTTCCTTGTCAGCGGTTCGTAATCTCAGACTAGTTTCGAAATCGTTTCGACGTATCTGTGATGAAAAGTATGTTTTCTACCGACTATCCCTCAAAGAAATCGAATTTCTCCCATGGCATGAGAACAGTGCAAAATTCATCGAGAGATGTACCGAGAGTAGAAACCCCGAAGCGTTGTTTCAGAAAGGATTCATTAACTATTTTCGAGATAAACTTCAAGACCGAGGACTCGAATATTTAGCTGAAGCTGCGGAAAAAGGTATCAAAGAAGCAAAATATGTCTACGGGGTGATTCTAATCTGTCTTGGAGGCAAAACAAAACAAAAGGGTTTCGAGATCTTGTCTTCTGTTATAAAGCAGTTGATGTCAACTACAATGAATGAGTTGGTGGAATTTCGATACAAGATTCAAAAGATTAGATACGGTTTTTGGTGGTCTGACAACACGGTGGTGGAACAACTCAAAACAGCCTACGTTAGTGAGAAGTGCAAGTGCGATTGTAAAACCAGGATGTTATTATTAGTAATGAATCGTGGTTGGTATTTATTCGGTGATGAAACCGACTTGGATTTTTCTTCTGCTTGTGAGTTATATCTGTACATAAACCGAAATTTTCCTTTTGAGGCCAAAAAATCTAAAATTGATGGGGAGATATACTGGGCCTGTGAATTTGAACCGAACCGATTTGTCCGAACCGAACCGAACCGAGGTTTGGACAAATCGGTTCGGTTAAGGTTAATTGAGTATAACCGATCGGTAAGTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

296

Amino Acids

34.44

Weight (kDa)

8.95

Isoelectric Point (pI)

44.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_27 PF23310 77 - 179 1.1e-27 Plant tetratrico peptide repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 476
AccI GTMKAC 1 cut(s) 405
AciI CCGC 2 cut(s) 137, 374
AcsI RAATTY 5 cut(s) 227, 257, 515, 733, 791
AcuI CTGAAG 1 cut(s) 387
AfaI GTAC 3 cut(s) 115, 274, 722
AfiI CCNNNNNNNGG 2 cut(s) 830, 835
AgsI TTSAA 3 cut(s) 341, 533, 797
AhlI ACTAGT 1 cut(s) 154
AjnI CCWGG 1 cut(s) 629
AjuI GAANNNNNNNTTGG 2 cut(s) 818, 850
AleI CACNNNNGTG 1 cut(s) 572
AluBI AGCT 4 cut(s) 63, 122, 365, 371
AluI AGCT 4 cut(s) 63, 122, 365, 371
Alw26I GTCTC 1 cut(s) 74
AoxI GGCC 2 cut(s) 747, 783
ApeKI GCWGC 1 cut(s) 371
ApoI RAATTY 5 cut(s) 227, 257, 515, 733, 791
Asp700I GAANNNNTTC 2 cut(s) 90, 311
AspS9I GGNCC 1 cut(s) 783
AsuHPI GGTGA 2 cut(s) 424, 686
AsuII TTCGAA 1 cut(s) 161
BarI GAAGNNNNNNTAC 2 cut(s) 106, 138
BauI CACGAG 1 cut(s) 95
BbsI GAAGAC 2 cut(s) 21, 459
BbvI GCAGC 1 cut(s) 358
BccI CCATC 1 cut(s) 761
BciT130I CCWGG 1 cut(s) 631
BciVI GTATCC 1 cut(s) 19
BcoDI GTCTC 1 cut(s) 74
BcuI ACTAGT 1 cut(s) 154
BfaI CTAG 1 cut(s) 155
BfuI GTATCC 1 cut(s) 19
BglII AGATCT 2 cut(s) 88, 459
BisI GCNGC 1 cut(s) 372
BlsI GCNGC 1 cut(s) 373
Bme1390I CCNGG 1 cut(s) 631
BmgT120I GGNCC 1 cut(s) 783
BmrFI CCNGG 1 cut(s) 631
BmrI ACTGGG 1 cut(s) 790
BmuI ACTGGG 1 cut(s) 790
BpiI GAAGAC 2 cut(s) 21, 459
Bpu14I TTCGAA 1 cut(s) 161
BsaBI GATNNNNATC 1 cut(s) 419
BsaJI CCNNGG 3 cut(s) 236, 346, 829
BsaWI WCCGGW 1 cut(s) 116
Bsc4I CCNNNNNNNGG 2 cut(s) 830, 835
Bse1I ACTGG 1 cut(s) 785
Bse8I GATNNNNATC 1 cut(s) 419
BseBI CCWGG 1 cut(s) 631
BseDI CCNNGG 3 cut(s) 236, 346, 829
BseGI GGATG 1 cut(s) 639
BseJI GATNNNNATC 1 cut(s) 419
BseLI CCNNNNNNNGG 2 cut(s) 830, 835
BseMII CTCAG 1 cut(s) 163
BseNI ACTGG 1 cut(s) 785
BseXI GCAGC 1 cut(s) 358
Bsh1285I CGRYCG 1 cut(s) 878
BshFI GGCC 2 cut(s) 749, 785
BsiEI CGRYCG 1 cut(s) 878
BsiSI CCGG 1 cut(s) 117
BslI CCNNNNNNNGG 2 cut(s) 830, 835
BsmAI GTCTC 1 cut(s) 74
BsnI GGCC 2 cut(s) 749, 785
Bsp119I TTCGAA 1 cut(s) 161
Bsp1407I TGTACA 1 cut(s) 720
Bsp143I GATC 3 cut(s) 88, 459, 875
Bsp19I CCATGG 1 cut(s) 236
BspACI CCGC 2 cut(s) 137, 374
BspANI GGCC 2 cut(s) 749, 785
BspCNI CTCAG 1 cut(s) 162
BspT104I TTCGAA 1 cut(s) 161
BsrGI TGTACA 1 cut(s) 720
BsrI ACTGG 1 cut(s) 785
BssECI CCNNGG 3 cut(s) 236, 346, 829
BssMI GATC 3 cut(s) 88, 459, 875
BssSI CACGAG 1 cut(s) 95
BssT1I CCWWGG 1 cut(s) 236
Bst2BI CACGAG 1 cut(s) 95
Bst2UI CCWGG 1 cut(s) 631
Bst4CI ACNGT 3 cut(s) 251, 548, 571
BstAUI TGTACA 1 cut(s) 720
BstBI TTCGAA 1 cut(s) 161
BstC8I GCNNGC 2 cut(s) 24, 61
BstDEI CTNAG 1 cut(s) 149
BstDSI CCRYGG 1 cut(s) 236
BstF5I GGATG 1 cut(s) 639
BstKTI GATC 3 cut(s) 91, 462, 878
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 3 cut(s) 88, 459, 875
BstMCI CGRYCG 1 cut(s) 878
BstMWI GCNNNNNNNGC 1 cut(s) 371
BstNI CCWGG 1 cut(s) 631
BstNSI RCATGY 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 629
BstV1I GCAGC 1 cut(s) 358
BstV2I GAAGAC 2 cut(s) 21, 459
BstX2I RGATCY 2 cut(s) 88, 459
BstYI RGATCY 2 cut(s) 88, 459
BsuI GTATCC 1 cut(s) 19
BsuRI GGCC 2 cut(s) 749, 785
BtgI CCRYGG 1 cut(s) 236
BtsCI GGATG 1 cut(s) 639
BtsIMutI CAGTG 1 cut(s) 256
Cac8I GCNNGC 2 cut(s) 24, 61
Cfr13I GGNCC 1 cut(s) 783
CseI GACGC 1 cut(s) 15
Csp6I GTAC 3 cut(s) 114, 273, 721
CviAII CATG 4 cut(s) 23, 111, 237, 242
CviJI RGCY 7 cut(s) 63, 122, 365, 371, 593, 749, 785
CviKI_1 RGCY 7 cut(s) 63, 122, 365, 371, 593, 749, 785
CviQI GTAC 3 cut(s) 114, 273, 721
DdeI CTNAG 1 cut(s) 149
DpnI GATC 3 cut(s) 90, 461, 877
DpnII GATC 3 cut(s) 88, 459, 875
Eco130I CCWWGG 1 cut(s) 236
Eco57I CTGAAG 1 cut(s) 387
EcoRII CCWGG 1 cut(s) 629
EcoT14I CCWWGG 1 cut(s) 236
ErhI CCWWGG 1 cut(s) 236
FaeI CATG 4 cut(s) 26, 114, 240, 245
FatI CATG 4 cut(s) 22, 110, 236, 241
FblI GTMKAC 1 cut(s) 405
Fnu4HI GCNGC 1 cut(s) 372
FokI GGATG 1 cut(s) 646
Fsp4HI GCNGC 1 cut(s) 372
FspBI CTAG 1 cut(s) 155
GluI GCNGC 1 cut(s) 372
HaeIII GGCC 2 cut(s) 749, 785
HapII CCGG 1 cut(s) 117
HgaI GACGC 1 cut(s) 15
Hin1II CATG 4 cut(s) 26, 114, 240, 245
HincII GTYRAC 1 cut(s) 492
HindII GTYRAC 1 cut(s) 492
HindIII AAGCTT 1 cut(s) 61
HinfI GANTC 6 cut(s) 74, 312, 351, 415, 529, 652
HpaII CCGG 1 cut(s) 117
HphI GGTGA 2 cut(s) 424, 686
Hpy166II GTNNAC 2 cut(s) 406, 492
Hpy188I TCNGA 4 cut(s) 152, 306, 562, 815
Hpy188III TCNNGA 5 cut(s) 71, 265, 329, 341, 457
Hpy8I GTNNAC 2 cut(s) 406, 492
Hpy99I CGWCG 1 cut(s) 177
HpyCH4III ACNGT 3 cut(s) 251, 548, 571
HpyCH4IV ACGT 2 cut(s) 175, 597
HpyCH4V TGCA 3 cut(s) 22, 254, 612
HpyF10VI GCNNNNNNNGC 1 cut(s) 371
HpyF3I CTNAG 1 cut(s) 149
HpySE526I ACGT 2 cut(s) 175, 597
Hsp92II CATG 4 cut(s) 26, 114, 240, 245
Kzo9I GATC 3 cut(s) 88, 459, 875
LmnI GCTCC 1 cut(s) 119
LpnPI CCDG 6 cut(s) 96, 130, 616, 643, 766, 799
Lsp1109I GCAGC 1 cut(s) 358
MaeI CTAG 1 cut(s) 155
MaeII ACGT 2 cut(s) 175, 597
MalI GATC 3 cut(s) 90, 461, 877
MboI GATC 3 cut(s) 88, 459, 875
MboII GAAGA 8 cut(s) 21, 24, 83, 98, 99, 117, 459, 690
MflI RGATCY 2 cut(s) 88, 459
MluCI AATT 7 cut(s) 227, 257, 515, 733, 762, 791, 861
MlyI GAGTC 1 cut(s) 345
MnlI CCTC 5 cut(s) 224, 341, 425, 739, 824
MroXI GAANNNNTTC 2 cut(s) 90, 311
MseI TTAA 4 cut(s) 318, 854, 860, 889
MslI CAYNNNNRTG 1 cut(s) 572
MspA1I CMGCKG 1 cut(s) 137
MspI CCGG 1 cut(s) 117
MspR9I CCNGG 1 cut(s) 631
MvaI CCWGG 1 cut(s) 631
MwoI GCNNNNNNNGC 1 cut(s) 371
NcoI CCATGG 1 cut(s) 236
NdeII GATC 3 cut(s) 88, 459, 875
NlaIII CATG 4 cut(s) 26, 114, 240, 245
NspI RCATGY 1 cut(s) 26
NspV TTCGAA 1 cut(s) 161
OliI CACNNNNGTG 1 cut(s) 572
PaeI GCATGC 1 cut(s) 26
PdmI GAANNNNTTC 2 cut(s) 90, 311
PfeI GAWTC 5 cut(s) 74, 312, 415, 529, 652
PkrI GCNGC 1 cut(s) 373
Ple19I CGATCG 1 cut(s) 878
PleI GAGTC 1 cut(s) 345
PpsI GAGTC 1 cut(s) 345
PsiI TTATAA 1 cut(s) 476
Psp6I CCWGG 1 cut(s) 629
PspGI CCWGG 1 cut(s) 629
PspPI GGNCC 1 cut(s) 783
PsuI RGATCY 2 cut(s) 88, 459
PvuI CGATCG 1 cut(s) 878
RsaI GTAC 3 cut(s) 115, 274, 722
RsaNI GTAC 3 cut(s) 114, 273, 721
RseI CAYNNNNRTG 1 cut(s) 572
SaqAI TTAA 4 cut(s) 318, 854, 860, 889
SatI GCNGC 1 cut(s) 372
Sau3AI GATC 3 cut(s) 88, 459, 875
Sau96I GGNCC 1 cut(s) 783
SchI GAGTC 1 cut(s) 345
ScrFI CCNGG 1 cut(s) 631
SetI ASST 9 cut(s) 65, 124, 178, 367, 373, 385, 600, 835, 860
SfuI TTCGAA 1 cut(s) 161
SmiMI CAYNNNNRTG 1 cut(s) 572
SpeI ACTAGT 1 cut(s) 154
SphI GCATGC 1 cut(s) 26
Sse9I AATT 7 cut(s) 227, 257, 515, 733, 762, 791, 861
SsiI CCGC 2 cut(s) 137, 374
SspI AATATT 1 cut(s) 359
SspMI CTAG 1 cut(s) 155
StyD4I CCNGG 1 cut(s) 629
StyI CCWWGG 1 cut(s) 236
TaaI ACNGT 3 cut(s) 251, 548, 571
TaiI ACGT 2 cut(s) 178, 600
TaqII GACCGA 1 cut(s) 360
TasI AATT 7 cut(s) 227, 257, 515, 733, 762, 791, 861
TatI WGTACW 1 cut(s) 720
TfiI GAWTC 5 cut(s) 74, 312, 415, 529, 652
Tru1I TTAA 4 cut(s) 318, 854, 860, 889
Tru9I TTAA 4 cut(s) 318, 854, 860, 889
TscAI CASTG 1 cut(s) 256
TseI GCWGC 1 cut(s) 371
TspDTI ATGAA 7 cut(s) 99, 201, 250, 304, 515, 665, 693
TspRI CASTG 1 cut(s) 256
XapI RAATTY 5 cut(s) 227, 257, 515, 733, 791
XceI RCATGY 1 cut(s) 26
XmiI GTMKAC 1 cut(s) 405
XmnI GAANNNNTTC 2 cut(s) 90, 311
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.