Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0006630

Physical Location & Seq

Genomic Coordinates Reverse (-)

14091605 .. 14092411

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1169500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGTTCGGTCTTTTGTTCTTATTTCAGGCATCGTCAACAACGCCTATCACAAGATCAAGAAGAAGAAGAAACCTCGAAACGCCTCATTGTCCATACAATCTCTTCCGAACGAGGTTCTGGTCCAAGTACTCGCAAGGGTCGCTTCACGCTCTTTTGATGATCTTTATTCAGCCAAGTTAAGTTGCAAGAATTTCAACGAAAGTGCTCAAGATGATCACATATTCGAGCATGTCGACATTAGCAAGTTCCCGCTGGTTTCTTGGCGCGCAAGTGAAAAACGCACGAGGTTTCTGAAGCGGTGCAGGGATCTTGGCAATGCGGAGGCCTTGTACAGGCAAGGGATGTGCGACCTCTTCACAAGCAAGAGGATAGAACCTGCGGGGATCGAGTCTCTGAAGAGGGCGGCCTCAAAGGGTCACGTAGAAGCAACATACGTGTACGGAGCGATCTTGGTGTGTTGCGGGGGCGATTCAAGGCAGAAAGGACTCGAGCTTCTGTACTCACTCAACTGCCACAAATCGAGAGGGTTAAGCGTGACAGAATGCCGAGAGAGGATTAAGGAATTGATTTGGAACACAATGTGGGTTAATAGGGAAGTAATAGGTAGAATTGTAGAAGCGCACGATGAGAACGCTGCCATGAAAGCATGCAACGACTGTGGAGATCCACAAGGTCCGTACACAATCAAACAAGGATGGGATTTCGATGACCATGATAAATTCAGTAGCTGTAATTCATGCAGATGGCATCAAGAAGTAAATATATTTTGTGATATATTAAGTTGTAGGCATACAAATTATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

269

Amino Acids

30.6

Weight (kDa)

8.74

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	32 - 80	3.1e-07	F-box-like
TPR_27	PF23310	82 - 191	5.3e-36	Plant tetratrico peptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14800 AT1G36030 AT1G67623 AT1G74875 AT2G35280 AT3G30430 AT5G17167
fragaria_vesca	FvH4_4g17961
malus_domestica	MD16G1169500.v1.1 MD16G1170100.v1.1
prunus_persica	Prupe.1G137300_v2.0.a1 Prupe.1G137300_v2.0.a1
pyrus_communis	pycom01g02790 pycom01g02800 pycom16g14270
rosa_chinensis	RchiOBHm_Chr4g0422141
rosa_laevigata	RLG00000007631
rosa_multiflora	Rmu_sc0004902.1_g000005
rosa_roxburghii	Rroxscaffold_5G00364220 Rroxscaffold_5G00364230
rosa_rugosa	Rorug04G0177600
rosa_samantha	Rh4AG237200 Rh4BG240000 Rh4CG251900 Rh4DG236100
rosa_wichuraiana	Rw4G020520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	385
AccI	GTMKAC	1 cut(s)	234
AccII	CGCG	1 cut(s)	267
AciI	CCGC	6 cut(s)	251, 298, 320, 380, 404, 462
AclWI	GGATC	3 cut(s)	315, 392, 659
AcsI	RAATTY	2 cut(s)	190, 719
AcuI	CTGAAG	2 cut(s)	314, 416
AdeI	CACNNNGTG	1 cut(s)	582
AfaI	GTAC	5 cut(s)	129, 332, 440, 500, 680
AfiI	CCNNNNNNNGG	1 cut(s)	333
AflIII	ACRYGT	1 cut(s)	435
AgsI	TTSAA	2 cut(s)	196, 474
AluBI	AGCT	2 cut(s)	493, 729
AluI	AGCT	2 cut(s)	493, 729
Alw21I	GWGCWC	1 cut(s)	208
Alw26I	GTCTC	1 cut(s)	396
AlwI	GGATC	3 cut(s)	315, 392, 659
AlwNI	CAGNNNCTG	1 cut(s)	729
Ama87I	CYCGRG	1 cut(s)	488
AoxI	GGCC	2 cut(s)	324, 405
ApeKI	GCWGC	1 cut(s)	635
ApoI	RAATTY	2 cut(s)	190, 719
AspLEI	GCGC	3 cut(s)	267, 269, 622
AspS9I	GGNCC	2 cut(s)	121, 674
AvaI	CYCGRG	1 cut(s)	488
AvaII	GGWCC	2 cut(s)	121, 674
BauI	CACGAG	1 cut(s)	283
Bbv12I	GWGCWC	1 cut(s)	208
BbvI	GCAGC	1 cut(s)	622
BccI	CCATC	2 cut(s)	690, 738
BclI	TGATCA	1 cut(s)	214
BcoDI	GTCTC	1 cut(s)	396
BfuAI	ACCTGC	1 cut(s)	385
BisI	GCNGC	2 cut(s)	405, 636
BlsI	GCNGC	2 cut(s)	406, 637
BmcAI	AGTACT	1 cut(s)	129
Bme18I	GGWCC	2 cut(s)	121, 674
BmeT110I	CYCGRG	1 cut(s)	488
BmgT120I	GGNCC	2 cut(s)	121, 674
BmsI	GCATC	2 cut(s)	39, 757
BpuEI	CTTGAG	1 cut(s)	192
BsaAI	YACGTR	2 cut(s)	421, 436
BsaXI	ACNNNNNCTCC	2 cut(s)	314, 344
Bsc4I	CCNNNNNNNGG	1 cut(s)	333
Bse3DI	GCAATG	1 cut(s)	322
BseGI	GGATG	2 cut(s)	348, 701
BseLI	CCNNNNNNNGG	1 cut(s)	333
BseMI	GCAATG	1 cut(s)	322
BsePI	GCGCGC	1 cut(s)	265
BseXI	GCAGC	1 cut(s)	622
BsgI	GTGCAG	1 cut(s)	322
Bsh1236I	CGCG	1 cut(s)	267
BshFI	GGCC	2 cut(s)	326, 407
BsiHKAI	GWGCWC	1 cut(s)	208
BsiHKCI	CYCGRG	1 cut(s)	488
BslI	CCNNNNNNNGG	1 cut(s)	333
BsmAI	GTCTC	1 cut(s)	396
BsmI	GAATGC	1 cut(s)	548
BsnI	GGCC	2 cut(s)	326, 407
BsoBI	CYCGRG	1 cut(s)	488
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp1407I	TGTACA	1 cut(s)	330
Bsp143I	GATC	7 cut(s)	54, 160, 214, 307, 384, 447, 664
BspACI	CCGC	6 cut(s)	251, 298, 320, 380, 404, 462
BspANI	GGCC	2 cut(s)	326, 407
BspFNI	CGCG	1 cut(s)	267
BspMI	ACCTGC	1 cut(s)	385
BspPI	GGATC	3 cut(s)	315, 392, 659
BsrDI	GCAATG	1 cut(s)	322
BsrGI	TGTACA	1 cut(s)	330
BssHII	GCGCGC	1 cut(s)	265
BssMI	GATC	7 cut(s)	54, 160, 214, 307, 384, 447, 664
BssSI	CACGAG	1 cut(s)	283
Bst2BI	CACGAG	1 cut(s)	283
Bst4CI	ACNGT	1 cut(s)	659
Bst6I	CTCTTC	3 cut(s)	108, 359, 392
BstAUI	TGTACA	1 cut(s)	330
BstBAI	YACGTR	2 cut(s)	421, 436
BstC8I	GCNNGC	2 cut(s)	267, 649
BstENI	CCTNNNNNAGG	1 cut(s)	331
BstF5I	GGATG	2 cut(s)	348, 701
BstFNI	CGCG	1 cut(s)	267
BstHHI	GCGC	3 cut(s)	267, 269, 622
BstKTI	GATC	7 cut(s)	57, 163, 217, 310, 387, 450, 667
BstMAI	GTCTC	1 cut(s)	396
BstMBI	GATC	7 cut(s)	54, 160, 214, 307, 384, 447, 664
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 644
BstNSI	RCATGY	2 cut(s)	233, 651
BstUI	CGCG	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	622
BstX2I	RGATCY	2 cut(s)	307, 664
BstYI	RGATCY	2 cut(s)	307, 664
BsuRI	GGCC	2 cut(s)	326, 407
BtsCI	GGATG	2 cut(s)	348, 701
BveI	ACCTGC	1 cut(s)	385
Cac8I	GCNNGC	2 cut(s)	267, 649
CaiI	CAGNNNCTG	1 cut(s)	729
CfoI	GCGC	3 cut(s)	267, 269, 622
Cfr13I	GGNCC	2 cut(s)	121, 674
Csp6I	GTAC	5 cut(s)	128, 331, 439, 499, 679
CspCI	CAANNNNNGTGG	2 cut(s)	640, 675
CviAII	CATG	5 cut(s)	230, 640, 648, 713, 738
CviJI	RGCY	5 cut(s)	173, 326, 407, 493, 729
CviKI_1	RGCY	5 cut(s)	173, 326, 407, 493, 729
CviQI	GTAC	5 cut(s)	128, 331, 439, 499, 679
DpnI	GATC	7 cut(s)	56, 162, 216, 309, 386, 449, 666
DpnII	GATC	7 cut(s)	54, 160, 214, 307, 384, 447, 664
DraIII	CACNNNGTG	1 cut(s)	582
Eam1104I	CTCTTC	3 cut(s)	108, 359, 392
EarI	CTCTTC	3 cut(s)	108, 359, 392
Eco147I	AGGCCT	1 cut(s)	326
Eco47I	GGWCC	2 cut(s)	121, 674
Eco57I	CTGAAG	2 cut(s)	314, 416
Eco88I	CYCGRG	1 cut(s)	488
EcoNI	CCTNNNNNAGG	1 cut(s)	331
FaeI	CATG	5 cut(s)	233, 643, 651, 716, 741
FalI	AAGNNNNNCTT	2 cut(s)	127, 159
FatI	CATG	5 cut(s)	229, 639, 647, 712, 737
FauI	CCCGC	3 cut(s)	258, 373, 455
FbaI	TGATCA	1 cut(s)	214
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	2 cut(s)	405, 636
FokI	GGATG	2 cut(s)	355, 708
Fsp4HI	GCNGC	2 cut(s)	405, 636
GlaI	GCGC	3 cut(s)	266, 268, 621
GluI	GCNGC	2 cut(s)	405, 636
HaeIII	GGCC	2 cut(s)	326, 407
HhaI	GCGC	3 cut(s)	267, 269, 622
Hin1II	CATG	5 cut(s)	233, 643, 651, 716, 741
Hin6I	GCGC	3 cut(s)	265, 267, 620
HinP1I	GCGC	3 cut(s)	265, 267, 620
HincII	GTYRAC	2 cut(s)	37, 235
HindII	GTYRAC	2 cut(s)	37, 235
HinfI	GANTC	3 cut(s)	389, 470, 486
Hpy166II	GTNNAC	4 cut(s)	37, 235, 439, 681
Hpy188I	TCNGA	3 cut(s)	108, 294, 396
Hpy188III	TCNNGA	4 cut(s)	58, 209, 522, 752
Hpy8I	GTNNAC	4 cut(s)	37, 235, 439, 681
HpyCH4III	ACNGT	1 cut(s)	659
HpyCH4IV	ACGT	2 cut(s)	420, 435
HpyCH4V	TGCA	4 cut(s)	186, 303, 651, 741
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 644
HpySE526I	ACGT	2 cut(s)	420, 435
Hsp92II	CATG	5 cut(s)	233, 643, 651, 716, 741
HspAI	GCGC	3 cut(s)	265, 267, 620
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	7 cut(s)	54, 160, 214, 307, 384, 447, 664
LmnI	GCTCC	1 cut(s)	443
LpnPI	CCDG	6 cut(s)	12, 104, 239, 289, 319, 390
Lsp1109I	GCAGC	1 cut(s)	622
LweI	GCATC	2 cut(s)	39, 757
MaeII	ACGT	2 cut(s)	420, 435
MaeIII	GTNAC	2 cut(s)	416, 535
MalI	GATC	7 cut(s)	56, 162, 216, 309, 386, 449, 666
MboI	GATC	7 cut(s)	54, 160, 214, 307, 384, 447, 664
MboII	GAAGA	6 cut(s)	73, 76, 79, 95, 346, 409
MflI	RGATCY	2 cut(s)	307, 664
MhlI	GDGCHC	1 cut(s)	208
MluCI	AATT	6 cut(s)	190, 563, 609, 719, 733, 796
MlyI	GAGTC	2 cut(s)	398, 480
MseI	TTAA	5 cut(s)	179, 530, 558, 588, 779
MslI	CAYNNNNRTG	1 cut(s)	742
MspA1I	CMGCKG	1 cut(s)	253
Mva1269I	GAATGC	1 cut(s)	548
MvnI	CGCG	1 cut(s)	267
MwoI	GCNNNNNNNGC	2 cut(s)	140, 644
NdeII	GATC	7 cut(s)	54, 160, 214, 307, 384, 447, 664
NlaIII	CATG	5 cut(s)	233, 643, 651, 716, 741
NmeAIII	GCCGAG	1 cut(s)	572
NmuCI	GTSAC	2 cut(s)	416, 535
NspI	RCATGY	2 cut(s)	233, 651
PaeI	GCATGC	1 cut(s)	651
PaeR7I	CTCGAG	1 cut(s)	488
PauI	GCGCGC	1 cut(s)	265
PceI	AGGCCT	1 cut(s)	326
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PctI	GAATGC	1 cut(s)	548
PfeI	GAWTC	1 cut(s)	470
PkrI	GCNGC	2 cut(s)	406, 637
PleI	GAGTC	2 cut(s)	397, 480
PpsI	GAGTC	2 cut(s)	397, 480
Ppu21I	YACGTR	2 cut(s)	421, 436
PspPI	GGNCC	2 cut(s)	121, 674
PspXI	VCTCGAGB	1 cut(s)	488
PstNI	CAGNNNCTG	1 cut(s)	729
PsuI	RGATCY	2 cut(s)	307, 664
PteI	GCGCGC	1 cut(s)	265
RsaI	GTAC	5 cut(s)	129, 332, 440, 500, 680
RsaNI	GTAC	5 cut(s)	128, 331, 439, 499, 679
RseI	CAYNNNNRTG	1 cut(s)	742
SalI	GTCGAC	1 cut(s)	233
SaqAI	TTAA	5 cut(s)	179, 530, 558, 588, 779
SatI	GCNGC	2 cut(s)	405, 636
Sau3AI	GATC	7 cut(s)	54, 160, 214, 307, 384, 447, 664
Sau96I	GGNCC	2 cut(s)	121, 674
ScaI	AGTACT	1 cut(s)	129
SchI	GAGTC	2 cut(s)	398, 480
SduI	GDGCHC	1 cut(s)	208
SfaNI	GCATC	2 cut(s)	39, 757
Sfr274I	CTCGAG	1 cut(s)	488
SinI	GGWCC	2 cut(s)	121, 674
SlaI	CTCGAG	1 cut(s)	488
SmiMI	CAYNNNNRTG	1 cut(s)	742
SmlI	CTYRAG	2 cut(s)	207, 488
SmoI	CTYRAG	2 cut(s)	207, 488
SphI	GCATGC	1 cut(s)	651
Sse9I	AATT	6 cut(s)	190, 563, 609, 719, 733, 796
SseBI	AGGCCT	1 cut(s)	326
SsiI	CCGC	6 cut(s)	251, 298, 320, 380, 404, 462
StuI	AGGCCT	1 cut(s)	326
TaaI	ACNGT	1 cut(s)	659
TaiI	ACGT	2 cut(s)	423, 438
TaqI	TCGA	7 cut(s)	76, 225, 234, 387, 489, 521, 705
TasI	AATT	6 cut(s)	190, 563, 609, 719, 733, 796
TatI	WGTACW	3 cut(s)	127, 330, 498
TauI	GCSGC	1 cut(s)	407
TfiI	GAWTC	1 cut(s)	470
Tru1I	TTAA	5 cut(s)	179, 530, 558, 588, 779
Tru9I	TTAA	5 cut(s)	179, 530, 558, 588, 779
TseFI	GTSAC	2 cut(s)	416, 535
TseI	GCWGC	1 cut(s)	635
Tsp45I	GTSAC	2 cut(s)	416, 535
TspDTI	ATGAA	2 cut(s)	656, 726
TspGWI	ACGGA	2 cut(s)	456, 666
VpaK11BI	GGWCC	2 cut(s)	121, 674
XagI	CCTNNNNNAGG	1 cut(s)	331
XapI	RAATTY	2 cut(s)	190, 719
XceI	RCATGY	2 cut(s)	233, 651
XhoI	CTCGAG	1 cut(s)	488
XmiI	GTMKAC	1 cut(s)	234
ZrmI	AGTACT	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.