Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0006630

Physical Location & Seq

Genomic Coordinates Reverse (-)

14147589 .. 14148401

Gene Structure 813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1170100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGTTCGCTCTTTTGTTCTTATTCCAGGCATCGTCAACGGCGCCTCTCGCAGGATCAAGAAGAAGAACAAGAAGAAACCTCGAAACGCCTCCTCGTCCATTCAATCTCTTCCGAACGAGGTTCTGGTCCAAGTACTCGCGAAGGTCGCTTCGCGCTCCTTCGATGATCTTTATTCAGCCATGTTAAGCTGCAAGGATTTCAACGAAAGTGCTCAAGATGATCACATATTCGAGCACGTCGACATTAGCAAGTTCCCGCTGGTTTCTTGGCGCGCAAGTGAAAAACACACGAGGTTTCTGATGCGGTGCAGGGATCTCGGCAATTCGGAGGCCTTGTACAGGCAAGGGATGCGCGACCTCTTCACAAGCAAGAGGATAGAACCTGCGGGGGTCGAGTCTCTGAAGAGGGCAGCCTCAAAGGGTCACGTAGAAGCAACGTACGTGTACGGAGCGATCTTGGTGTGTTGCGGGGGCGATTCAAGGCAGAAAGGACTTGAGCTTCTGTACTCACTCAACCGCCACAAATCGAGAGGGTTAAGCGTGACAGAATGCCGAGAGAGGATTAAGGAATTGATTTGGAACACAATGTGGGTGAATAGGGAAGTAATAGGTAGAATTGTAGAAGCACACGATGAGAACGCTGCCATGAAAGCATGCAACGACTGTGGAGATCCACAAGGTCCGTACACAATCGAACAAGGATGGGATTTCGATGACCATGATAAATTCAGTAGCTGTAATTCGTGCAGATGGCATCAGGAAGTAAATATATTTTGTGATATATTAAGTCGTAGTCGTGCAAATTATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

271

Amino Acids

30.78

Weight (kDa)

8.76

Isoelectric Point (pI)

52.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	34 - 82	2.2e-07	F-box-like
TPR_27	PF23310	84 - 193	2.5e-35	Plant tetratrico peptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14800 AT1G36030 AT1G67623 AT1G74875 AT2G35280 AT3G30430 AT5G17167
fragaria_vesca	FvH4_4g17961
malus_domestica	MD16G1169500.v1.1 MD16G1170100.v1.1
prunus_persica	Prupe.1G137300_v2.0.a1 Prupe.1G137300_v2.0.a1
pyrus_communis	pycom01g02790 pycom01g02800 pycom16g14270
rosa_chinensis	RchiOBHm_Chr4g0422141
rosa_laevigata	RLG00000007631
rosa_multiflora	Rmu_sc0004902.1_g000005
rosa_roxburghii	Rroxscaffold_5G00364220 Rroxscaffold_5G00364230
rosa_rugosa	Rorug04G0177600
rosa_samantha	Rh4AG237200 Rh4BG240000 Rh4CG251900 Rh4DG236100
rosa_wichuraiana	Rw4G020520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	391
AccB1I	GGYRCC	1 cut(s)	41
AccI	GTMKAC	1 cut(s)	240
AccII	CGCG	4 cut(s)	140, 154, 273, 354
AciI	CCGC	5 cut(s)	257, 304, 386, 468, 517
AclWI	GGATC	3 cut(s)	62, 321, 665
AcsI	RAATTY	1 cut(s)	725
AcuI	CTGAAG	1 cut(s)	422
AcyI	GRCGYC	1 cut(s)	42
AdeI	CACNNNGTG	1 cut(s)	588
AfaI	GTAC	6 cut(s)	135, 338, 440, 446, 506, 686
AfiI	CCNNNNNNNGG	2 cut(s)	51, 339
AflIII	ACRYGT	1 cut(s)	441
AgsI	TTSAA	3 cut(s)	104, 202, 480
AjiI	CACGTC	1 cut(s)	238
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	3 cut(s)	189, 499, 735
AluI	AGCT	3 cut(s)	189, 499, 735
Alw21I	GWGCWC	2 cut(s)	214, 237
Alw26I	GTCTC	1 cut(s)	402
AlwI	GGATC	3 cut(s)	62, 321, 665
AlwNI	CAGNNNCTG	1 cut(s)	735
AoxI	GGCC	1 cut(s)	330
ApeKI	GCWGC	3 cut(s)	189, 410, 641
ApoI	RAATTY	1 cut(s)	725
AspLEI	GCGC	5 cut(s)	44, 156, 273, 275, 354
AspS9I	GGNCC	2 cut(s)	127, 680
AsuHPI	GGTGA	1 cut(s)	604
AvaII	GGWCC	2 cut(s)	127, 680
BanI	GGYRCC	1 cut(s)	41
BauI	CACGAG	1 cut(s)	289
Bbv12I	GWGCWC	2 cut(s)	214, 237
BbvI	GCAGC	3 cut(s)	176, 422, 628
BccI	CCATC	2 cut(s)	696, 744
BceAI	ACGGC	1 cut(s)	55
BcgI	CGANNNNNNTGC	2 cut(s)	298, 332
BciT130I	CCWGG	1 cut(s)	27
BclI	TGATCA	1 cut(s)	220
BcoDI	GTCTC	1 cut(s)	402
BfoI	RGCGCY	1 cut(s)	45
BfuAI	ACCTGC	1 cut(s)	391
BisI	GCNGC	3 cut(s)	190, 411, 642
BlsI	GCNGC	3 cut(s)	191, 412, 643
BmcAI	AGTACT	1 cut(s)	135
Bme1390I	CCNGG	1 cut(s)	27
Bme18I	GGWCC	2 cut(s)	127, 680
BmgBI	CACGTC	1 cut(s)	238
BmgT120I	GGNCC	2 cut(s)	127, 680
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	27
BmsI	GCATC	4 cut(s)	39, 291, 339, 763
BpuEI	CTTGAG	2 cut(s)	198, 515
BsaAI	YACGTR	2 cut(s)	427, 442
BsaHI	GRCGYC	1 cut(s)	42
BsaXI	ACNNNNNCTCC	2 cut(s)	320, 350
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 339
BseBI	CCWGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	354, 707
BseLI	CCNNNNNNNGG	2 cut(s)	51, 339
BsePI	GCGCGC	1 cut(s)	271
BseRI	GAGGAG	1 cut(s)	82
BseXI	GCAGC	3 cut(s)	176, 422, 628
BsgI	GTGCAG	2 cut(s)	328, 766
Bsh1236I	CGCG	4 cut(s)	140, 154, 273, 354
BshFI	GGCC	1 cut(s)	332
BshNI	GGYRCC	1 cut(s)	41
BsiHKAI	GWGCWC	2 cut(s)	214, 237
BsiWI	CGTACG	1 cut(s)	438
BslI	CCNNNNNNNGG	2 cut(s)	51, 339
BsmAI	GTCTC	1 cut(s)	402
BsmI	GAATGC	1 cut(s)	554
BsnI	GGCC	1 cut(s)	332
Bsp1286I	GDGCHC	2 cut(s)	214, 237
Bsp1407I	TGTACA	1 cut(s)	336
Bsp143I	GATC	6 cut(s)	54, 166, 220, 313, 453, 670
Bsp68I	TCGCGA	1 cut(s)	140
BspACI	CCGC	5 cut(s)	257, 304, 386, 468, 517
BspANI	GGCC	1 cut(s)	332
BspFNI	CGCG	4 cut(s)	140, 154, 273, 354
BspLI	GGNNCC	1 cut(s)	43
BspMI	ACCTGC	1 cut(s)	391
BspPI	GGATC	3 cut(s)	62, 321, 665
BspT107I	GGYRCC	1 cut(s)	41
BsrGI	TGTACA	1 cut(s)	336
BssHII	GCGCGC	1 cut(s)	271
BssMI	GATC	6 cut(s)	54, 166, 220, 313, 453, 670
BssNI	GRCGYC	1 cut(s)	42
BssSI	CACGAG	1 cut(s)	289
Bst2BI	CACGAG	1 cut(s)	289
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	665
Bst6I	CTCTTC	3 cut(s)	114, 365, 398
BstACI	GRCGYC	1 cut(s)	42
BstAPI	GCANNNNNTGC	1 cut(s)	349
BstAUI	TGTACA	1 cut(s)	336
BstBAI	YACGTR	2 cut(s)	427, 442
BstC8I	GCNNGC	2 cut(s)	273, 655
BstENI	CCTNNNNNAGG	2 cut(s)	49, 337
BstF5I	GGATG	2 cut(s)	354, 707
BstFNI	CGCG	4 cut(s)	140, 154, 273, 354
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	5 cut(s)	44, 156, 273, 275, 354
BstKTI	GATC	6 cut(s)	57, 169, 223, 316, 456, 673
BstMAI	GTCTC	1 cut(s)	402
BstMBI	GATC	6 cut(s)	54, 166, 220, 313, 453, 670
BstMWI	GCNNNNNNNGC	4 cut(s)	48, 146, 349, 650
BstNI	CCWGG	1 cut(s)	27
BstNSI	RCATGY	1 cut(s)	657
BstSCI	CCNGG	1 cut(s)	25
BstUI	CGCG	4 cut(s)	140, 154, 273, 354
BstV1I	GCAGC	3 cut(s)	176, 422, 628
BstX2I	RGATCY	2 cut(s)	313, 670
BstYI	RGATCY	2 cut(s)	313, 670
BsuRI	GGCC	1 cut(s)	332
BtrI	CACGTC	1 cut(s)	238
BtsCI	GGATG	2 cut(s)	354, 707
BtuMI	TCGCGA	1 cut(s)	140
BveI	ACCTGC	1 cut(s)	391
Cac8I	GCNNGC	2 cut(s)	273, 655
CaiI	CAGNNNCTG	1 cut(s)	735
CfoI	GCGC	5 cut(s)	44, 156, 273, 275, 354
Cfr13I	GGNCC	2 cut(s)	127, 680
Csp6I	GTAC	6 cut(s)	134, 337, 439, 445, 505, 685
CspCI	CAANNNNNGTGG	2 cut(s)	646, 681
CviAII	CATG	4 cut(s)	181, 646, 654, 719
CviJI	RGCY	6 cut(s)	179, 189, 332, 413, 499, 735
CviKI_1	RGCY	6 cut(s)	179, 189, 332, 413, 499, 735
CviQI	GTAC	6 cut(s)	134, 337, 439, 445, 505, 685
DinI	GGCGCC	1 cut(s)	43
DpnI	GATC	6 cut(s)	56, 168, 222, 315, 455, 672
DpnII	GATC	6 cut(s)	54, 166, 220, 313, 453, 670
DraIII	CACNNNGTG	1 cut(s)	588
Eam1104I	CTCTTC	3 cut(s)	114, 365, 398
EarI	CTCTTC	3 cut(s)	114, 365, 398
Eco147I	AGGCCT	1 cut(s)	332
Eco47I	GGWCC	2 cut(s)	127, 680
Eco57I	CTGAAG	1 cut(s)	422
EcoNI	CCTNNNNNAGG	2 cut(s)	49, 337
EcoRII	CCWGG	1 cut(s)	25
EgeI	GGCGCC	1 cut(s)	43
EheI	GGCGCC	1 cut(s)	43
FaeI	CATG	4 cut(s)	184, 649, 657, 722
FaiI	YATR	8 cut(s)	182, 227, 647, 655, 720, 770, 782, 807
FatI	CATG	4 cut(s)	180, 645, 653, 718
FauI	CCCGC	3 cut(s)	264, 379, 461
FbaI	TGATCA	1 cut(s)	220
FblI	GTMKAC	1 cut(s)	240
Fnu4HI	GCNGC	3 cut(s)	190, 411, 642
FokI	GGATG	2 cut(s)	361, 714
Fsp4HI	GCNGC	3 cut(s)	190, 411, 642
GlaI	GCGC	5 cut(s)	43, 155, 272, 274, 353
GluI	GCNGC	3 cut(s)	190, 411, 642
HaeII	RGCGCY	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	332
HhaI	GCGC	5 cut(s)	44, 156, 273, 275, 354
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	4 cut(s)	184, 649, 657, 722
Hin6I	GCGC	5 cut(s)	42, 154, 271, 273, 352
HinP1I	GCGC	5 cut(s)	42, 154, 271, 273, 352
HincII	GTYRAC	2 cut(s)	37, 241
HindII	GTYRAC	2 cut(s)	37, 241
HinfI	GANTC	2 cut(s)	395, 476
HphI	GGTGA	1 cut(s)	604
Hpy166II	GTNNAC	4 cut(s)	37, 241, 445, 687
Hpy188I	TCNGA	4 cut(s)	114, 300, 328, 402
Hpy188III	TCNNGA	5 cut(s)	58, 139, 215, 528, 758
Hpy8I	GTNNAC	4 cut(s)	37, 241, 445, 687
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	2 cut(s)	136, 169
HpyCH4III	ACNGT	1 cut(s)	665
HpyCH4IV	ACGT	4 cut(s)	237, 426, 437, 441
HpyCH4V	TGCA	5 cut(s)	192, 309, 657, 747, 800
HpyF10VI	GCNNNNNNNGC	4 cut(s)	48, 146, 349, 650
HpySE526I	ACGT	4 cut(s)	237, 426, 437, 441
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	4 cut(s)	184, 649, 657, 722
HspAI	GCGC	5 cut(s)	42, 154, 271, 273, 352
KasI	GGCGCC	1 cut(s)	41
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	6 cut(s)	54, 166, 220, 313, 453, 670
LmnI	GCTCC	2 cut(s)	161, 449
LpnPI	CCDG	9 cut(s)	12, 37, 39, 110, 245, 295, 325, 396, 743
Lsp1109I	GCAGC	3 cut(s)	176, 422, 628
LweI	GCATC	4 cut(s)	39, 291, 339, 763
MaeII	ACGT	4 cut(s)	237, 426, 437, 441
MaeIII	GTNAC	2 cut(s)	422, 541
MalI	GATC	6 cut(s)	56, 168, 222, 315, 455, 672
MboI	GATC	6 cut(s)	54, 166, 220, 313, 453, 670
MboII	GAAGA	6 cut(s)	73, 76, 85, 101, 352, 415
MflI	RGATCY	2 cut(s)	313, 670
MhlI	GDGCHC	2 cut(s)	214, 237
MluCI	AATT	6 cut(s)	322, 569, 615, 725, 739, 802
Mly113I	GGCGCC	1 cut(s)	42
MlyI	GAGTC	1 cut(s)	404
MseI	TTAA	4 cut(s)	185, 536, 564, 785
MspA1I	CMGCKG	1 cut(s)	259
MspR9I	CCNGG	1 cut(s)	27
Mva1269I	GAATGC	1 cut(s)	554
MvaI	CCWGG	1 cut(s)	27
MvnI	CGCG	4 cut(s)	140, 154, 273, 354
MwoI	GCNNNNNNNGC	4 cut(s)	48, 146, 349, 650
NarI	GGCGCC	1 cut(s)	42
NdeII	GATC	6 cut(s)	54, 166, 220, 313, 453, 670
NlaIII	CATG	4 cut(s)	184, 649, 657, 722
NlaIV	GGNNCC	1 cut(s)	43
NmeAIII	GCCGAG	2 cut(s)	297, 578
NmuCI	GTSAC	2 cut(s)	422, 541
NruI	TCGCGA	1 cut(s)	140
NspI	RCATGY	1 cut(s)	657
PaeI	GCATGC	1 cut(s)	657
PauI	GCGCGC	1 cut(s)	271
PceI	AGGCCT	1 cut(s)	332
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PctI	GAATGC	1 cut(s)	554
PfeI	GAWTC	1 cut(s)	476
Pfl23II	CGTACG	1 cut(s)	438
PkrI	GCNGC	3 cut(s)	191, 412, 643
PleI	GAGTC	1 cut(s)	403
PluTI	GGCGCC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	403
Ppu21I	YACGTR	2 cut(s)	427, 442
Psp6I	CCWGG	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	25
PspLI	CGTACG	1 cut(s)	438
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	2 cut(s)	127, 680
PstNI	CAGNNNCTG	1 cut(s)	735
PsuI	RGATCY	2 cut(s)	313, 670
PteI	GCGCGC	1 cut(s)	271
RruI	TCGCGA	1 cut(s)	140
RsaI	GTAC	6 cut(s)	135, 338, 440, 446, 506, 686
RsaNI	GTAC	6 cut(s)	134, 337, 439, 445, 505, 685
SalI	GTCGAC	1 cut(s)	239
SaqAI	TTAA	4 cut(s)	185, 536, 564, 785
SatI	GCNGC	3 cut(s)	190, 411, 642
Sau3AI	GATC	6 cut(s)	54, 166, 220, 313, 453, 670
Sau96I	GGNCC	2 cut(s)	127, 680
ScaI	AGTACT	1 cut(s)	135
SchI	GAGTC	1 cut(s)	404
ScrFI	CCNGG	1 cut(s)	27
SduI	GDGCHC	2 cut(s)	214, 237
SfaNI	GCATC	4 cut(s)	39, 291, 339, 763
SfoI	GGCGCC	1 cut(s)	43
SinI	GGWCC	2 cut(s)	127, 680
SmlI	CTYRAG	2 cut(s)	213, 494
SmoI	CTYRAG	2 cut(s)	213, 494
SphI	GCATGC	1 cut(s)	657
Sse9I	AATT	6 cut(s)	322, 569, 615, 725, 739, 802
SseBI	AGGCCT	1 cut(s)	332
SsiI	CCGC	5 cut(s)	257, 304, 386, 468, 517
SspDI	GGCGCC	1 cut(s)	41
StuI	AGGCCT	1 cut(s)	332
StyD4I	CCNGG	1 cut(s)	25
TaaI	ACNGT	1 cut(s)	665
TaiI	ACGT	4 cut(s)	240, 429, 440, 444
TaqI	TCGA	8 cut(s)	82, 162, 231, 240, 393, 527, 693, 711
TasI	AATT	6 cut(s)	322, 569, 615, 725, 739, 802
TatI	WGTACW	3 cut(s)	133, 336, 504
TfiI	GAWTC	1 cut(s)	476
Tru1I	TTAA	4 cut(s)	185, 536, 564, 785
Tru9I	TTAA	4 cut(s)	185, 536, 564, 785
TseFI	GTSAC	2 cut(s)	422, 541
TseI	GCWGC	3 cut(s)	189, 410, 641
Tsp45I	GTSAC	2 cut(s)	422, 541
TspDTI	ATGAA	1 cut(s)	662
TspGWI	ACGGA	2 cut(s)	462, 672
VpaK11BI	GGWCC	2 cut(s)	127, 680
XagI	CCTNNNNNAGG	2 cut(s)	49, 337
XapI	RAATTY	1 cut(s)	725
XceI	RCATGY	1 cut(s)	657
XmiI	GTMKAC	1 cut(s)	240
ZrmI	AGTACT	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.