Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0006630

Physical Location & Seq

Genomic Coordinates Reverse (-)

19226576 .. 19227435

Gene Structure 860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007631

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCGTCTCTCTCAACGACAAGGATAAGGAAGAAGGTTGGAAAGCGTAGGTCAAGAAAGGAAGGTCATAACGTTTCGGCCATGAAGTCACTTCCCAACGATCTTTTGTTGGAAGTGATTGCTAAGGTTGCTTCGAATTCTTTCGATGATCTTTGCCGCATTAGGCGAACTTGCAAGGAGTTTAACGAGGCGGGGCAAGAGGACTATATTTTTCAACGTGTATCGATCGAAAAGTTTCCACTCTTTCCTTTGAGAAAAAGGAAACGATTTTCTGAATTAATGAGACGTTGCCAAGAGTGTGGCAATGCAGAGGCTCTGTATAGACAAGGAGTGCTTGATCTTTTTAGCTTGAGGAAGCGATATGAATTCGAATCGGGATTCGAGTGTTTGGAGAAAGCTGCAGCAAAAGGTCACATAGAAGCAACGTATCTGTATGGGGTATTCTTAACTTGTATAGGAGGTGAGGCGAAGCAACAAGGTCTGCAATCCTTGTGTAGTCTCAATGGTAAAGATTTAAGTGAATCAAGAGAAAGGTTTATGACTTGCATTCAAAGTATGTGGGTGAATAATGTCCTAGTACGTAAAATACTTGCCTACAATGATCGTGTTAAAGCATGCAGCCAATGCGGAAATTTGCAGAACAATTTCGTAACCAAACGAGGCTGGGACGATGTTTACGACGAAGGTGATAACTTAAATGGGTGTGGTTCATGCAAGATGAATCGAGAAGTTAATATTTTTTGTGATAGATTACGTAGCTCTACATATATCAATTCATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

261

Amino Acids

29.87

Weight (kDa)

9.22

Isoelectric Point (pI)

57.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	29 - 76	5e-06	F-box-like
TPR_27	PF23310	78 - 183	9.8e-28	Plant tetratrico peptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14800 AT1G36030 AT1G67623 AT1G74875 AT2G35280 AT3G30430 AT5G17167
fragaria_vesca	FvH4_4g17961
malus_domestica	MD16G1169500.v1.1 MD16G1170100.v1.1
prunus_persica	Prupe.1G137300_v2.0.a1 Prupe.1G137300_v2.0.a1
pyrus_communis	pycom01g02790 pycom01g02800 pycom16g14270
rosa_chinensis	RchiOBHm_Chr4g0422141
rosa_laevigata	RLG00000007631
rosa_multiflora	Rmu_sc0004902.1_g000005
rosa_roxburghii	Rroxscaffold_5G00364220 Rroxscaffold_5G00364230
rosa_rugosa	Rorug04G0177600
rosa_samantha	Rh4AG237200 Rh4BG240000 Rh4CG251900 Rh4DG236100
rosa_wichuraiana	Rw4G020520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	157, 191, 627
AclI	AACGTT	1 cut(s)	72
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	3 cut(s)	136, 365, 631
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	579
AflIII	ACRYGT	1 cut(s)	217
AgsI	TTSAA	2 cut(s)	215, 551
AluBI	AGCT	3 cut(s)	348, 398, 759
AluI	AGCT	3 cut(s)	348, 398, 759
Alw26I	GTCTC	3 cut(s)	12, 277, 503
AoxI	GGCC	1 cut(s)	78
ApeKI	GCWGC	3 cut(s)	398, 401, 618
ApoI	RAATTY	3 cut(s)	136, 365, 631
AseI	ATTAAT	1 cut(s)	278
Asp700I	GAANNNNTTC	3 cut(s)	140, 234, 644
AsuHPI	GGTGA	3 cut(s)	473, 574, 698
AsuII	TTCGAA	2 cut(s)	134, 369
BbvI	GCAGC	3 cut(s)	385, 413, 630
BcoDI	GTCTC	3 cut(s)	12, 277, 503
BfaI	CTAG	1 cut(s)	575
BfmI	CTRYAG	1 cut(s)	399
BisI	GCNGC	4 cut(s)	157, 399, 402, 619
BlsI	GCNGC	4 cut(s)	158, 400, 403, 620
Bpu10I	CCTNAGC	1 cut(s)	123
Bpu14I	TTCGAA	2 cut(s)	134, 369
BpuEI	CTTGAG	1 cut(s)	370
Bsa29I	ATCGAT	1 cut(s)	224
BsaAI	YACGTR	2 cut(s)	581, 755
BsaHI	GRCGYC	1 cut(s)	5
Bse3DI	GCAATG	1 cut(s)	310
BseCI	ATCGAT	1 cut(s)	224
BseMI	GCAATG	1 cut(s)	310
BseXI	GCAGC	3 cut(s)	385, 413, 630
BseYI	CCCAGC	1 cut(s)	663
Bsh1285I	CGRYCG	1 cut(s)	228
BshFI	GGCC	1 cut(s)	80
BshVI	ATCGAT	1 cut(s)	224
BsiEI	CGRYCG	1 cut(s)	228
BslFI	GGGAC	1 cut(s)	680
BsmAI	GTCTC	3 cut(s)	12, 277, 503
BsmBI	CGTCTC	2 cut(s)	12, 277
BsmFI	GGGAC	1 cut(s)	680
BsmI	GAATGC	1 cut(s)	546
BsnI	GGCC	1 cut(s)	80
Bsp119I	TTCGAA	2 cut(s)	134, 369
Bsp143I	GATC	5 cut(s)	100, 148, 225, 337, 601
BspACI	CCGC	3 cut(s)	157, 191, 627
BspANI	GGCC	1 cut(s)	80
BspDI	ATCGAT	1 cut(s)	224
BspMAI	CTGCAG	1 cut(s)	403
BspT104I	TTCGAA	2 cut(s)	134, 369
BsrDI	GCAATG	1 cut(s)	310
BssMI	GATC	5 cut(s)	100, 148, 225, 337, 601
BssNI	GRCGYC	1 cut(s)	5
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	624
BstBAI	YACGTR	2 cut(s)	581, 755
BstBI	TTCGAA	2 cut(s)	134, 369
BstC8I	GCNNGC	1 cut(s)	616
BstDEI	CTNAG	1 cut(s)	123
BstKTI	GATC	5 cut(s)	103, 151, 228, 340, 604
BstMAI	GTCTC	3 cut(s)	12, 277, 503
BstMBI	GATC	5 cut(s)	100, 148, 225, 337, 601
BstMCI	CGRYCG	1 cut(s)	228
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 624
BstNSI	RCATGY	1 cut(s)	618
BstSFI	CTRYAG	1 cut(s)	399
BstSNI	TACGTA	2 cut(s)	581, 755
BstV1I	GCAGC	3 cut(s)	385, 413, 630
BstXI	CCANNNNNNTGG	1 cut(s)	299
Bsu15I	ATCGAT	1 cut(s)	224
BsuRI	GGCC	1 cut(s)	80
BsuTUI	ATCGAT	1 cut(s)	224
Cac8I	GCNNGC	1 cut(s)	616
ClaI	ATCGAT	1 cut(s)	224
Csp6I	GTAC	1 cut(s)	578
CspCI	CAANNNNNGTGG	2 cut(s)	539, 574
CviAII	CATG	3 cut(s)	82, 615, 711
CviJI	RGCY	7 cut(s)	80, 314, 348, 398, 621, 663, 759
CviKI_1	RGCY	7 cut(s)	80, 314, 348, 398, 621, 663, 759
CviQI	GTAC	1 cut(s)	578
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	5 cut(s)	102, 150, 227, 339, 603
DpnII	GATC	5 cut(s)	100, 148, 225, 337, 601
EaeI	YGGCCR	1 cut(s)	78
Eco105I	TACGTA	2 cut(s)	581, 755
EcoRI	GAATTC	2 cut(s)	136, 365
Esp3I	CGTCTC	2 cut(s)	12, 277
FaeI	CATG	3 cut(s)	85, 618, 714
FalI	AAGNNNNNCTT	2 cut(s)	318, 350
FaqI	GGGAC	1 cut(s)	680
FatI	CATG	3 cut(s)	81, 614, 710
FauI	CCCGC	1 cut(s)	184
Fnu4HI	GCNGC	4 cut(s)	157, 399, 402, 619
Fsp4HI	GCNGC	4 cut(s)	157, 399, 402, 619
FspBI	CTAG	1 cut(s)	575
GluI	GCNGC	4 cut(s)	157, 399, 402, 619
GsaI	CCCAGC	1 cut(s)	667
HaeIII	GGCC	1 cut(s)	80
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	85, 618, 714
HinfI	GANTC	4 cut(s)	371, 378, 521, 721
HphI	GGTGA	3 cut(s)	473, 574, 698
Hpy166II	GTNNAC	1 cut(s)	676
Hpy188I	TCNGA	1 cut(s)	274
Hpy188III	TCNNGA	4 cut(s)	54, 375, 525, 725
Hpy8I	GTNNAC	1 cut(s)	676
Hpy99I	CGWCG	1 cut(s)	683
HpyAV	CCTTC	3 cut(s)	28, 56, 677
HpyCH4IV	ACGT	6 cut(s)	72, 217, 286, 425, 580, 754
HpyCH4V	TGCA	8 cut(s)	174, 308, 401, 484, 546, 618, 637, 714
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 624
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	6 cut(s)	72, 217, 286, 425, 580, 754
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	85, 618, 714
Kzo9I	GATC	5 cut(s)	100, 148, 225, 337, 601
LpnPI	CCDG	1 cut(s)	649
Lsp1109I	GCAGC	3 cut(s)	385, 413, 630
MaeI	CTAG	1 cut(s)	575
MaeII	ACGT	6 cut(s)	72, 217, 286, 425, 580, 754
MaeIII	GTNAC	3 cut(s)	87, 410, 649
MalI	GATC	5 cut(s)	102, 150, 227, 339, 603
MboI	GATC	5 cut(s)	100, 148, 225, 337, 601
MboII	GAAGA	1 cut(s)	43
MluCI	AATT	6 cut(s)	136, 275, 365, 631, 643, 772
MmeI	TCCRAC	2 cut(s)	19, 90
MnlI	CCTC	7 cut(s)	181, 193, 304, 345, 452, 457, 653
MroXI	GAANNNNTTC	3 cut(s)	140, 234, 644
MseI	TTAA	7 cut(s)	183, 278, 446, 515, 609, 695, 732
Mva1269I	GAATGC	1 cut(s)	546
MwoI	GCNNNNNNNGC	2 cut(s)	128, 624
NdeII	GATC	5 cut(s)	100, 148, 225, 337, 601
NlaIII	CATG	3 cut(s)	85, 618, 714
NmuCI	GTSAC	2 cut(s)	87, 410
NspI	RCATGY	1 cut(s)	618
NspV	TTCGAA	2 cut(s)	134, 369
PaeI	GCATGC	1 cut(s)	618
PcsI	WCGNNNNNNNCGW	1 cut(s)	675
PctI	GAATGC	1 cut(s)	546
PdmI	GAANNNNTTC	3 cut(s)	140, 234, 644
PfeI	GAWTC	4 cut(s)	371, 378, 521, 721
PkrI	GCNGC	4 cut(s)	158, 400, 403, 620
Ple19I	CGATCG	1 cut(s)	228
Ppu21I	YACGTR	2 cut(s)	581, 755
PshBI	ATTAAT	1 cut(s)	278
Psp1406I	AACGTT	1 cut(s)	72
PspFI	CCCAGC	1 cut(s)	663
PstI	CTGCAG	1 cut(s)	403
PvuI	CGATCG	1 cut(s)	228
RsaI	GTAC	1 cut(s)	579
RsaNI	GTAC	1 cut(s)	578
SaqAI	TTAA	7 cut(s)	183, 278, 446, 515, 609, 695, 732
SatI	GCNGC	4 cut(s)	157, 399, 402, 619
Sau3AI	GATC	5 cut(s)	100, 148, 225, 337, 601
SfcI	CTRYAG	1 cut(s)	399
SfuI	TTCGAA	2 cut(s)	134, 369
SmlI	CTYRAG	1 cut(s)	349
SmoI	CTYRAG	1 cut(s)	349
SnaBI	TACGTA	2 cut(s)	581, 755
SphI	GCATGC	1 cut(s)	618
Sse9I	AATT	6 cut(s)	136, 275, 365, 631, 643, 772
SsiI	CCGC	3 cut(s)	157, 191, 627
SspI	AATATT	1 cut(s)	736
SspMI	CTAG	1 cut(s)	575
TaiI	ACGT	6 cut(s)	75, 220, 289, 428, 583, 757
TaqI	TCGA	7 cut(s)	134, 144, 224, 228, 369, 381, 724
TasI	AATT	6 cut(s)	136, 275, 365, 631, 643, 772
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	4 cut(s)	371, 378, 521, 721
Tru1I	TTAA	7 cut(s)	183, 278, 446, 515, 609, 695, 732
Tru9I	TTAA	7 cut(s)	183, 278, 446, 515, 609, 695, 732
TseFI	GTSAC	2 cut(s)	87, 410
TseI	GCWGC	3 cut(s)	398, 401, 618
Tsp45I	GTSAC	2 cut(s)	87, 410
TspDTI	ATGAA	5 cut(s)	98, 378, 699, 734, 765
VspI	ATTAAT	1 cut(s)	278
XapI	RAATTY	3 cut(s)	136, 365, 631
XceI	RCATGY	1 cut(s)	618
XmnI	GAANNNNTTC	3 cut(s)	140, 234, 644
XspI	CTAG	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.