Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0006630

Physical Location & Seq

Genomic Coordinates Forward (+)

54196025 .. 54197113

Gene Structure 1089 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG237200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGCGTCTCTATCGACGACAAGGAATGAGGTTTTTTCTTCTTTGGCAAAGATAAGGAAGAAAGCTAGAAAACGTAGGTCAACAAAGGAAGGTCATAACGTTTCGGCCATGAAGTCACTTCCCAACGATCTTTTGTTGGAAGTGATTGCTAAGGTTGCTTCGAATTCTTTCGATGATCTTTGCCGCATTAGGCAAACTTGCAAGGAGTTTAACGAGGCGGGACAAGAGGACTATATTTTTCAACATGTATCGATCGAAAAGCTTCCACTCTTTCCTTTGAGAAAAAGGAAACGATTTTCTGAATTAATGAGACGTTGCCAAAAGTGTGGCAATGCAGAGGCTCTGTATAGACAAGGAGTGCTTGATCTTTTTAGCTTGAGGAATCGATATGATCAATTCGAATCGGGATTCGAGTGTTTGGAGAAAGCTGCAGCAAAAGGTCACATAGAAGCAACGTATCTTTATGGGGTATTCTTAACTTGTGTAGGAGGTGAGGCGAAGCAACAAGGTCTACAATCCTTGTGTAGTCTCAATGGTAAAGATTTAAGTGAATCAAGAGAAAGGTTTATGACTTGCATTCAAAGTATGTGGGTGAATAATGTCCTAGTACGTAAAATACTTGCCTACAATGATCGTGTTAAAGCATGCAGCCAATGCGGAAATTTGCAGAATAATTTCGTAACCAAACGAGGCTGGGACGATGTTTACGACGAAGGTGATAACTTAAATGGGTGTGGTTCATGCAAGATGAATCGAGAAGTTAATATTTTTTGTGATAGATTACGTAGCTCTACATATGTCAATTCATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

270

Amino Acids

30.86

Weight (kDa)

9.14

Isoelectric Point (pI)

52.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	38 - 85	5.5e-06	F-box-like
TPR_27	PF23310	88 - 193	3.8e-27	Plant tetratrico peptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14800 AT1G36030 AT1G67623 AT1G74875 AT2G35280 AT3G30430 AT5G17167
fragaria_vesca	FvH4_4g17961
malus_domestica	MD16G1169500.v1.1 MD16G1170100.v1.1
prunus_persica	Prupe.1G137300_v2.0.a1 Prupe.1G137300_v2.0.a1
pyrus_communis	pycom01g02790 pycom01g02800 pycom16g14270
rosa_chinensis	RchiOBHm_Chr4g0422141
rosa_laevigata	RLG00000007631
rosa_multiflora	Rmu_sc0004902.1_g000005
rosa_roxburghii	Rroxscaffold_5G00364220 Rroxscaffold_5G00364230
rosa_rugosa	Rorug04G0177600
rosa_samantha	Rh4AG237200 Rh4BG240000 Rh4CG251900 Rh4DG236100
rosa_wichuraiana	Rw4G020520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	511
AciI	CCGC	3 cut(s)	184, 218, 657
AclI	AACGTT	1 cut(s)	99
AcoI	YGGCCR	1 cut(s)	105
AcsI	RAATTY	2 cut(s)	163, 661
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	609
AflIII	ACRYGT	1 cut(s)	244
AgsI	TTSAA	2 cut(s)	242, 581
AluBI	AGCT	5 cut(s)	65, 262, 375, 428, 789
AluI	AGCT	5 cut(s)	65, 262, 375, 428, 789
Alw26I	GTCTC	3 cut(s)	12, 304, 533
AoxI	GGCC	1 cut(s)	105
ApeKI	GCWGC	3 cut(s)	428, 431, 648
ApoI	RAATTY	2 cut(s)	163, 661
AseI	ATTAAT	1 cut(s)	305
Asp700I	GAANNNNTTC	3 cut(s)	167, 261, 674
AsuHPI	GGTGA	3 cut(s)	503, 604, 728
AsuII	TTCGAA	2 cut(s)	161, 399
BbvI	GCAGC	3 cut(s)	415, 443, 660
BclI	TGATCA	1 cut(s)	391
BcoDI	GTCTC	3 cut(s)	12, 304, 533
BfaI	CTAG	2 cut(s)	66, 605
BfmI	CTRYAG	1 cut(s)	429
BisI	GCNGC	4 cut(s)	184, 429, 432, 649
BlsI	GCNGC	4 cut(s)	185, 430, 433, 650
Bpu10I	CCTNAGC	1 cut(s)	150
Bpu14I	TTCGAA	2 cut(s)	161, 399
BpuEI	CTTGAG	1 cut(s)	397
Bsa29I	ATCGAT	2 cut(s)	251, 385
BsaAI	YACGTR	2 cut(s)	611, 785
BsaHI	GRCGYC	1 cut(s)	5
Bse3DI	GCAATG	1 cut(s)	337
BseCI	ATCGAT	2 cut(s)	251, 385
BseMI	GCAATG	1 cut(s)	337
BseXI	GCAGC	3 cut(s)	415, 443, 660
BseYI	CCCAGC	1 cut(s)	693
Bsh1285I	CGRYCG	1 cut(s)	255
BshFI	GGCC	1 cut(s)	107
BshVI	ATCGAT	2 cut(s)	251, 385
BsiEI	CGRYCG	1 cut(s)	255
BslFI	GGGAC	2 cut(s)	234, 710
BsmAI	GTCTC	3 cut(s)	12, 304, 533
BsmBI	CGTCTC	2 cut(s)	12, 304
BsmFI	GGGAC	2 cut(s)	234, 710
BsmI	GAATGC	1 cut(s)	576
BsnI	GGCC	1 cut(s)	107
Bsp119I	TTCGAA	2 cut(s)	161, 399
Bsp143I	GATC	6 cut(s)	127, 175, 252, 364, 391, 631
BspACI	CCGC	3 cut(s)	184, 218, 657
BspANI	GGCC	1 cut(s)	107
BspDI	ATCGAT	2 cut(s)	251, 385
BspMAI	CTGCAG	1 cut(s)	433
BspT104I	TTCGAA	2 cut(s)	161, 399
BsrDI	GCAATG	1 cut(s)	337
BssMI	GATC	6 cut(s)	127, 175, 252, 364, 391, 631
BssNI	GRCGYC	1 cut(s)	5
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	654
BstBAI	YACGTR	2 cut(s)	611, 785
BstBI	TTCGAA	2 cut(s)	161, 399
BstC8I	GCNNGC	1 cut(s)	646
BstDEI	CTNAG	1 cut(s)	150
BstKTI	GATC	6 cut(s)	130, 178, 255, 367, 394, 634
BstMAI	GTCTC	3 cut(s)	12, 304, 533
BstMBI	GATC	6 cut(s)	127, 175, 252, 364, 391, 631
BstMCI	CGRYCG	1 cut(s)	255
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 654
BstNSI	RCATGY	2 cut(s)	248, 648
BstSFI	CTRYAG	1 cut(s)	429
BstSNI	TACGTA	2 cut(s)	611, 785
BstV1I	GCAGC	3 cut(s)	415, 443, 660
BstXI	CCANNNNNNTGG	1 cut(s)	326
Bsu15I	ATCGAT	2 cut(s)	251, 385
BsuRI	GGCC	1 cut(s)	107
BsuTUI	ATCGAT	2 cut(s)	251, 385
Cac8I	GCNNGC	1 cut(s)	646
ClaI	ATCGAT	2 cut(s)	251, 385
Csp6I	GTAC	1 cut(s)	608
CspCI	CAANNNNNGTGG	2 cut(s)	569, 604
CviAII	CATG	4 cut(s)	109, 245, 645, 741
CviJI	RGCY	9 cut(s)	65, 107, 262, 341, 375, 428, 651, 693, 789
CviKI_1	RGCY	9 cut(s)	65, 107, 262, 341, 375, 428, 651, 693, 789
CviQI	GTAC	1 cut(s)	608
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	6 cut(s)	129, 177, 254, 366, 393, 633
DpnII	GATC	6 cut(s)	127, 175, 252, 364, 391, 631
EaeI	YGGCCR	1 cut(s)	105
Eco105I	TACGTA	2 cut(s)	611, 785
EcoRI	GAATTC	1 cut(s)	163
Esp3I	CGTCTC	2 cut(s)	12, 304
FaeI	CATG	4 cut(s)	112, 248, 648, 744
FalI	AAGNNNNNCTT	2 cut(s)	345, 377
FaqI	GGGAC	2 cut(s)	234, 710
FatI	CATG	4 cut(s)	108, 244, 644, 740
FauI	CCCGC	1 cut(s)	211
FauNDI	CATATG	1 cut(s)	796
FbaI	TGATCA	1 cut(s)	391
FblI	GTMKAC	1 cut(s)	511
Fnu4HI	GCNGC	4 cut(s)	184, 429, 432, 649
Fsp4HI	GCNGC	4 cut(s)	184, 429, 432, 649
FspBI	CTAG	2 cut(s)	66, 605
GluI	GCNGC	4 cut(s)	184, 429, 432, 649
GsaI	CCCAGC	1 cut(s)	697
HaeIII	GGCC	1 cut(s)	107
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	112, 248, 648, 744
HincII	GTYRAC	1 cut(s)	81
HindII	GTYRAC	1 cut(s)	81
HindIII	AAGCTT	1 cut(s)	260
HinfI	GANTC	5 cut(s)	382, 401, 408, 551, 751
HphI	GGTGA	3 cut(s)	503, 604, 728
Hpy166II	GTNNAC	3 cut(s)	81, 512, 706
Hpy188I	TCNGA	1 cut(s)	301
Hpy188III	TCNNGA	3 cut(s)	405, 555, 755
Hpy8I	GTNNAC	3 cut(s)	81, 512, 706
Hpy99I	CGWCG	2 cut(s)	19, 713
HpyAV	CCTTC	2 cut(s)	83, 707
HpyCH4IV	ACGT	6 cut(s)	73, 99, 313, 455, 610, 784
HpyCH4V	TGCA	7 cut(s)	201, 335, 431, 576, 648, 667, 744
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 654
HpyF3I	CTNAG	1 cut(s)	150
HpySE526I	ACGT	6 cut(s)	73, 99, 313, 455, 610, 784
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	112, 248, 648, 744
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	6 cut(s)	127, 175, 252, 364, 391, 631
LpnPI	CCDG	1 cut(s)	679
Lsp1109I	GCAGC	3 cut(s)	415, 443, 660
MaeI	CTAG	2 cut(s)	66, 605
MaeII	ACGT	6 cut(s)	73, 99, 313, 455, 610, 784
MaeIII	GTNAC	3 cut(s)	114, 440, 679
MalI	GATC	6 cut(s)	129, 177, 254, 366, 393, 633
MboI	GATC	6 cut(s)	127, 175, 252, 364, 391, 631
MboII	GAAGA	2 cut(s)	30, 70
MluCI	AATT	6 cut(s)	163, 302, 395, 661, 673, 802
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	8 cut(s)	22, 208, 220, 331, 372, 482, 487, 683
MroXI	GAANNNNTTC	3 cut(s)	167, 261, 674
MseI	TTAA	7 cut(s)	210, 305, 476, 545, 639, 725, 762
Mva1269I	GAATGC	1 cut(s)	576
MwoI	GCNNNNNNNGC	2 cut(s)	155, 654
NdeI	CATATG	1 cut(s)	796
NdeII	GATC	6 cut(s)	127, 175, 252, 364, 391, 631
NlaIII	CATG	4 cut(s)	112, 248, 648, 744
NmuCI	GTSAC	2 cut(s)	114, 440
NspI	RCATGY	2 cut(s)	248, 648
NspV	TTCGAA	2 cut(s)	161, 399
PaeI	GCATGC	1 cut(s)	648
PciI	ACATGT	1 cut(s)	244
PcsI	WCGNNNNNNNCGW	1 cut(s)	705
PctI	GAATGC	1 cut(s)	576
PdmI	GAANNNNTTC	3 cut(s)	167, 261, 674
PfeI	GAWTC	5 cut(s)	382, 401, 408, 551, 751
PkrI	GCNGC	4 cut(s)	185, 430, 433, 650
Ple19I	CGATCG	1 cut(s)	255
Ppu21I	YACGTR	2 cut(s)	611, 785
PscI	ACATGT	1 cut(s)	244
PshBI	ATTAAT	1 cut(s)	305
Psp1406I	AACGTT	1 cut(s)	99
PspFI	CCCAGC	1 cut(s)	693
PstI	CTGCAG	1 cut(s)	433
PvuI	CGATCG	1 cut(s)	255
RsaI	GTAC	1 cut(s)	609
RsaNI	GTAC	1 cut(s)	608
SaqAI	TTAA	7 cut(s)	210, 305, 476, 545, 639, 725, 762
SatI	GCNGC	4 cut(s)	184, 429, 432, 649
Sau3AI	GATC	6 cut(s)	127, 175, 252, 364, 391, 631
SfcI	CTRYAG	1 cut(s)	429
SfuI	TTCGAA	2 cut(s)	161, 399
SmlI	CTYRAG	1 cut(s)	376
SmoI	CTYRAG	1 cut(s)	376
SnaBI	TACGTA	2 cut(s)	611, 785
SphI	GCATGC	1 cut(s)	648
Sse9I	AATT	6 cut(s)	163, 302, 395, 661, 673, 802
SsiI	CCGC	3 cut(s)	184, 218, 657
SspI	AATATT	1 cut(s)	766
SspMI	CTAG	2 cut(s)	66, 605
TaiI	ACGT	6 cut(s)	76, 102, 316, 458, 613, 787
TaqI	TCGA	9 cut(s)	14, 161, 171, 251, 255, 385, 399, 411, 754
TasI	AATT	6 cut(s)	163, 302, 395, 661, 673, 802
TauI	GCSGC	1 cut(s)	186
TfiI	GAWTC	5 cut(s)	382, 401, 408, 551, 751
Tru1I	TTAA	7 cut(s)	210, 305, 476, 545, 639, 725, 762
Tru9I	TTAA	7 cut(s)	210, 305, 476, 545, 639, 725, 762
TseFI	GTSAC	2 cut(s)	114, 440
TseI	GCWGC	3 cut(s)	428, 431, 648
Tsp45I	GTSAC	2 cut(s)	114, 440
TspDTI	ATGAA	4 cut(s)	125, 729, 764, 795
VspI	ATTAAT	1 cut(s)	305
XapI	RAATTY	2 cut(s)	163, 661
XceI	RCATGY	2 cut(s)	248, 648
XmiI	GTMKAC	1 cut(s)	511
XmnI	GAANNNNTTC	3 cut(s)	167, 261, 674
XspI	CTAG	2 cut(s)	66, 605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.