Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006630

Physical Location & Seq

Genomic Coordinates Forward (+)

2287676 .. 2288704

Gene Structure 1029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g02800.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGAGAGGTGGTGTATTTATTCATACTTGTCCAAGCATAAACCATTTCATCCAATTGCAGAATGATGAAGAAAGGCACAACGACCCTAACTTTCATACAAACTTTCCGGATAAGCTTCTTCTGAATATACTCACCAAGGTTGTTTCCTGCTCCTTTCGTTCCCTATATTCAACAAAAATGGTGTGCAAGAACAGCATTCAAAGATTTGAAAAGGTCGACCCGCTAACTTCATGGAGGAGACATGAAGAAGTGTATAAGTTCTTGGAACGATGCATTGAGTGCAACAATCCCGAGTATTTTGAACTCGAAATTGAGTCTTTGAAGATGATGATCTCCAAGGGTCATCAAGCATCAACGTACGTCTATGATGCAATCTTGGTGTGCGAGGGTGGGGATGAAAAAGAGAAAGGCCTTAACCTTCTAGAAAGAGCTCAGCAATTTTTTTGGCCAATTAGGGTAGACAAGGAAGTTAGAGGTAGAATAATAAAACTTCACGAGGACGGTGCTACCGTCAAAGCCTGCAGTGACTGTGAAAGTGCACAAGGTCATTTCACAGTTCGACCCCATTGGGATTTCTGGTGCCATGGCAAATTCAGTAGCTGCAATTCGTATTTGTTTTTTTTTCCTTTACTTTTCTTCAAATTTAGCAAGGTTCTAAAAGATGGCCTAGCACCTAGGCGGCTAGCTATTATATTTCGTGTAAATAAGTGTCTGTTTACATTTAAAATATACATAATTTCATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

249

Amino Acids

29.16

Weight (kDa)

8.59

Isoelectric Point (pI)

40.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14800 AT1G36030 AT1G67623 AT1G74875 AT2G35280 AT3G30430 AT5G17167
fragaria_vesca	FvH4_4g17961
malus_domestica	MD16G1169500.v1.1 MD16G1170100.v1.1
prunus_persica	Prupe.1G137300_v2.0.a1 Prupe.1G137300_v2.0.a1
pyrus_communis	pycom01g02790 pycom01g02800 pycom16g14270
rosa_chinensis	RchiOBHm_Chr4g0422141
rosa_laevigata	RLG00000007631
rosa_multiflora	Rmu_sc0004902.1_g000005
rosa_roxburghii	Rroxscaffold_5G00364220 Rroxscaffold_5G00364230
rosa_rugosa	Rorug04G0177600
rosa_samantha	Rh4AG237200 Rh4BG240000 Rh4CG251900 Rh4DG236100
rosa_wichuraiana	Rw4G020520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	579
AccI	GTMKAC	2 cut(s)	216, 459
AccIII	TCCGGA	1 cut(s)	106
AciI	CCGC	2 cut(s)	221, 679
AcoI	YGGCCR	1 cut(s)	446
AcsI	RAATTY	2 cut(s)	590, 641
AfaI	GTAC	1 cut(s)	359
AgsI	TTSAA	6 cut(s)	171, 200, 209, 302, 322, 640
AluBI	AGCT	4 cut(s)	115, 431, 600, 686
AluI	AGCT	4 cut(s)	115, 431, 600, 686
Alw21I	GWGCWC	2 cut(s)	433, 541
Alw26I	GTCTC	1 cut(s)	232
Alw44I	GTGCAC	1 cut(s)	537
AlwNI	CAGNNNCTG	2 cut(s)	528, 600
Ama87I	CYCGRG	1 cut(s)	290
Aor13HI	TCCGGA	1 cut(s)	106
AoxI	GGCC	3 cut(s)	409, 446, 664
ApaLI	GTGCAC	1 cut(s)	537
ApeKI	GCWGC	1 cut(s)	600
ApoI	RAATTY	2 cut(s)	590, 641
AspA2I	CCTAGG	1 cut(s)	674
AsuHPI	GGTGA	1 cut(s)	124
AsuNHI	GCTAGC	1 cut(s)	682
AvaI	CYCGRG	1 cut(s)	290
AvrII	CCTAGG	1 cut(s)	674
BaeGI	GKGCMC	1 cut(s)	541
BalI	TGGCCA	1 cut(s)	448
BanI	GGYRCC	1 cut(s)	579
BanII	GRGCYC	1 cut(s)	433
BauI	CACGAG	1 cut(s)	494
Bbv12I	GWGCWC	2 cut(s)	433, 541
BbvI	GCAGC	1 cut(s)	587
BccI	CCATC	1 cut(s)	656
BcgI	CGANNNNNNTGC	2 cut(s)	485, 519
BcoDI	GTCTC	1 cut(s)	232
BfaI	CTAG	4 cut(s)	422, 668, 675, 683
BfmI	CTRYAG	1 cut(s)	520
BisI	GCNGC	2 cut(s)	601, 680
BlnI	CCTAGG	1 cut(s)	674
BlpI	GCTNAGC	1 cut(s)	432
BlsI	GCNGC	2 cut(s)	602, 681
BmeT110I	CYCGRG	1 cut(s)	290
BmiI	GGNNCC	1 cut(s)	581
BmsI	GCATC	3 cut(s)	260, 358, 359
BmtI	GCTAGC	1 cut(s)	686
Bpu1102I	GCTNAGC	1 cut(s)	432
BsaBI	GATNNNNATC	1 cut(s)	329
BsaJI	CCNNGG	4 cut(s)	135, 336, 583, 674
BsaWI	WCCGGW	1 cut(s)	106
Bse8I	GATNNNNATC	1 cut(s)	329
BseAI	TCCGGA	1 cut(s)	106
BseDI	CCNNGG	4 cut(s)	135, 336, 583, 674
BseGI	GGATG	2 cut(s)	48, 400
BseJI	GATNNNNATC	1 cut(s)	329
BseMII	CTCAG	1 cut(s)	446
BseRI	GAGGAG	1 cut(s)	250
BseSI	GKGCMC	1 cut(s)	541
BseXI	GCAGC	1 cut(s)	587
BshFI	GGCC	3 cut(s)	411, 448, 666
BshNI	GGYRCC	1 cut(s)	579
BsiHKAI	GWGCWC	2 cut(s)	433, 541
BsiHKCI	CYCGRG	1 cut(s)	290
BsiSI	CCGG	1 cut(s)	107
BsiWI	CGTACG	1 cut(s)	357
BsmAI	GTCTC	1 cut(s)	232
BsmI	GAATGC	1 cut(s)	195
BsnI	GGCC	3 cut(s)	411, 448, 666
BsoBI	CYCGRG	1 cut(s)	290
Bsp1286I	GDGCHC	2 cut(s)	433, 541
Bsp13I	TCCGGA	1 cut(s)	106
Bsp143I	GATC	1 cut(s)	330
Bsp1720I	GCTNAGC	1 cut(s)	432
Bsp19I	CCATGG	1 cut(s)	583
BspACI	CCGC	2 cut(s)	221, 679
BspANI	GGCC	3 cut(s)	411, 448, 666
BspCNI	CTCAG	1 cut(s)	445
BspEI	TCCGGA	1 cut(s)	106
BspLI	GGNNCC	1 cut(s)	581
BspMAI	CTGCAG	1 cut(s)	524
BspOI	GCTAGC	1 cut(s)	686
BspT107I	GGYRCC	1 cut(s)	579
BssECI	CCNNGG	4 cut(s)	135, 336, 583, 674
BssMI	GATC	1 cut(s)	330
BssSI	CACGAG	1 cut(s)	494
BssT1I	CCWWGG	4 cut(s)	135, 336, 583, 674
Bst2BI	CACGAG	1 cut(s)	494
Bst4CI	ACNGT	4 cut(s)	503, 511, 530, 556
BstAPI	GCANNNNNTGC	1 cut(s)	279
BstC8I	GCNNGC	2 cut(s)	520, 684
BstDEI	CTNAG	1 cut(s)	432
BstDSI	CCRYGG	1 cut(s)	583
BstF5I	GGATG	2 cut(s)	48, 400
BstKTI	GATC	1 cut(s)	333
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	330
BstMWI	GCNNNNNNNGC	2 cut(s)	192, 279
BstSFI	CTRYAG	1 cut(s)	520
BstSLI	GKGCMC	1 cut(s)	541
BstV1I	GCAGC	1 cut(s)	587
BsuRI	GGCC	3 cut(s)	411, 448, 666
BtgI	CCRYGG	1 cut(s)	583
BtsCI	GGATG	2 cut(s)	48, 400
BtsI	GCAGTG	1 cut(s)	529
BtsIMutI	CAGTG	1 cut(s)	529
Cac8I	GCNNGC	2 cut(s)	520, 684
CaiI	CAGNNNCTG	2 cut(s)	528, 600
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	3 cut(s)	231, 242, 584
CviJI	RGCY	9 cut(s)	115, 411, 431, 448, 518, 600, 666, 682, 686
CviKI_1	RGCY	9 cut(s)	115, 411, 431, 448, 518, 600, 666, 682, 686
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	1 cut(s)	432
DpnI	GATC	1 cut(s)	332
DpnII	GATC	1 cut(s)	330
DraI	TTTAAA	1 cut(s)	724
EaeI	YGGCCR	1 cut(s)	446
Ecl136II	GAGCTC	1 cut(s)	431
Eco130I	CCWWGG	4 cut(s)	135, 336, 583, 674
Eco147I	AGGCCT	1 cut(s)	411
Eco24I	GRGCYC	1 cut(s)	433
Eco53kI	GAGCTC	1 cut(s)	431
Eco88I	CYCGRG	1 cut(s)	290
EcoICRI	GAGCTC	1 cut(s)	431
EcoT14I	CCWWGG	4 cut(s)	135, 336, 583, 674
EcoT22I	ATGCAT	1 cut(s)	275
EcoT38I	GRGCYC	1 cut(s)	433
ErhI	CCWWGG	4 cut(s)	135, 336, 583, 674
FaeI	CATG	3 cut(s)	234, 245, 587
FatI	CATG	3 cut(s)	230, 241, 583
FauI	CCCGC	1 cut(s)	228
FblI	GTMKAC	2 cut(s)	216, 459
Fnu4HI	GCNGC	2 cut(s)	601, 680
FokI	GGATG	2 cut(s)	35, 407
FriOI	GRGCYC	1 cut(s)	433
Fsp4HI	GCNGC	2 cut(s)	601, 680
FspBI	CTAG	4 cut(s)	422, 668, 675, 683
GluI	GCNGC	2 cut(s)	601, 680
HaeIII	GGCC	3 cut(s)	411, 448, 666
HapII	CCGG	1 cut(s)	107
Hin1II	CATG	3 cut(s)	234, 245, 587
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	1 cut(s)	314
HpaII	CCGG	1 cut(s)	107
HphI	GGTGA	1 cut(s)	124
Hpy166II	GTNNAC	4 cut(s)	217, 460, 539, 717
Hpy188I	TCNGA	1 cut(s)	123
Hpy188III	TCNNGA	4 cut(s)	107, 290, 422, 494
Hpy8I	GTNNAC	4 cut(s)	217, 460, 539, 717
HpyAV	CCTTC	1 cut(s)	428
HpyCH4III	ACNGT	4 cut(s)	503, 511, 530, 556
HpyCH4IV	ACGT	2 cut(s)	356, 360
HpyCH4V	TGCA	8 cut(s)	58, 186, 273, 282, 371, 522, 539, 603
HpyF10VI	GCNNNNNNNGC	2 cut(s)	192, 279
HpyF3I	CTNAG	1 cut(s)	432
HpySE526I	ACGT	2 cut(s)	356, 360
Hsp92II	CATG	3 cut(s)	234, 245, 587
Kpn2I	TCCGGA	1 cut(s)	106
Kzo9I	GATC	1 cut(s)	330
LmnI	GCTCC	1 cut(s)	155
LpnPI	CCDG	4 cut(s)	120, 160, 532, 562
Lsp1109I	GCAGC	1 cut(s)	587
LweI	GCATC	3 cut(s)	260, 358, 359
MaeI	CTAG	4 cut(s)	422, 668, 675, 683
MaeII	ACGT	2 cut(s)	356, 360
MaeIII	GTNAC	1 cut(s)	524
MalI	GATC	1 cut(s)	332
MboI	GATC	1 cut(s)	330
MboII	GAAGA	5 cut(s)	80, 110, 257, 334, 628
MfeI	CAATTG	1 cut(s)	53
MhlI	GDGCHC	2 cut(s)	433, 541
MlsI	TGGCCA	1 cut(s)	448
MluCI	AATT	8 cut(s)	53, 309, 437, 450, 590, 604, 641, 735
MluNI	TGGCCA	1 cut(s)	448
MlyI	GAGTC	1 cut(s)	323
MnlI	CCTC	4 cut(s)	228, 379, 467, 490
Mox20I	TGGCCA	1 cut(s)	448
Mph1103I	ATGCAT	1 cut(s)	275
MroI	TCCGGA	1 cut(s)	106
MscI	TGGCCA	1 cut(s)	448
MseI	TTAA	2 cut(s)	414, 723
Msp20I	TGGCCA	1 cut(s)	448
MspI	CCGG	1 cut(s)	107
MunI	CAATTG	1 cut(s)	53
Mva1269I	GAATGC	1 cut(s)	195
MwoI	GCNNNNNNNGC	2 cut(s)	192, 279
NcoI	CCATGG	1 cut(s)	583
NdeII	GATC	1 cut(s)	330
NheI	GCTAGC	1 cut(s)	682
NlaIII	CATG	3 cut(s)	234, 245, 587
NlaIV	GGNNCC	1 cut(s)	581
NmuCI	GTSAC	1 cut(s)	524
NsiI	ATGCAT	1 cut(s)	275
PceI	AGGCCT	1 cut(s)	411
PcsI	WCGNNNNNNNCGW	1 cut(s)	507
PctI	GAATGC	1 cut(s)	195
Pfl23II	CGTACG	1 cut(s)	357
PkrI	GCNGC	2 cut(s)	602, 681
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
Psp124BI	GAGCTC	1 cut(s)	433
PspLI	CGTACG	1 cut(s)	357
PspN4I	GGNNCC	1 cut(s)	581
PstI	CTGCAG	1 cut(s)	524
PstNI	CAGNNNCTG	2 cut(s)	528, 600
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
SacI	GAGCTC	1 cut(s)	433
SalI	GTCGAC	1 cut(s)	215
SaqAI	TTAA	2 cut(s)	414, 723
SatI	GCNGC	2 cut(s)	601, 680
Sau3AI	GATC	1 cut(s)	330
SchI	GAGTC	1 cut(s)	323
SduI	GDGCHC	2 cut(s)	433, 541
SfaNI	GCATC	3 cut(s)	260, 358, 359
SfcI	CTRYAG	1 cut(s)	520
Sse9I	AATT	8 cut(s)	53, 309, 437, 450, 590, 604, 641, 735
SseBI	AGGCCT	1 cut(s)	411
SsiI	CCGC	2 cut(s)	221, 679
SspMI	CTAG	4 cut(s)	422, 668, 675, 683
SstI	GAGCTC	1 cut(s)	433
StuI	AGGCCT	1 cut(s)	411
StyI	CCWWGG	4 cut(s)	135, 336, 583, 674
TaaI	ACNGT	4 cut(s)	503, 511, 530, 556
TaiI	ACGT	2 cut(s)	359, 363
TaqI	TCGA	3 cut(s)	216, 306, 559
TasI	AATT	8 cut(s)	53, 309, 437, 450, 590, 604, 641, 735
TauI	GCSGC	1 cut(s)	682
Tru1I	TTAA	2 cut(s)	414, 723
Tru9I	TTAA	2 cut(s)	414, 723
TscAI	CASTG	1 cut(s)	529
TseFI	GTSAC	1 cut(s)	524
TseI	GCWGC	1 cut(s)	600
Tsp45I	GTSAC	1 cut(s)	524
TspDTI	ATGAA	8 cut(s)	11, 37, 81, 83, 219, 258, 411, 729
TspRI	CASTG	1 cut(s)	529
VneI	GTGCAC	1 cut(s)	537
XapI	RAATTY	2 cut(s)	590, 641
XbaI	TCTAGA	1 cut(s)	421
XmaJI	CCTAGG	1 cut(s)	674
XmiI	GTMKAC	2 cut(s)	216, 459
XspI	CTAG	4 cut(s)	422, 668, 675, 683
Zsp2I	ATGCAT	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.