AT3G30430

DNA recombination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0006630
Physical Location & Seq
Forward (+)
12064952 .. 12065296
345 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G30430.1

Sequence Viewer

Length: 345 bp
ATGGATCCCAACAAAGCTGAAATTAGTCGTCTTGAGGTACTTCCTCAAGATCTACTCGGAGAAATAGTTGCCAAAATAGGGGCAAAATACGCTGAAGATTATCACAATTGCATCCTTTCATGCAAAGAACTAGGTGCATCAGCAAACGATGAACGCGTGCTCAAAACCCTTAATCTTGCTCCGTTGGTGAAGAAACCGTTATCATGCCGCAAACACCTTCTTATTATGAAGAAATGTCTTGCCAACAACAACCCGGATGCTCACTACATAAAAGGTATAATATGGTACTTTAACCTTGATCATTGTGACGTTGGTCTCCACCATATTGGCATAGCAGCTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.72

Weight (kDa)

7.68

Isoelectric Point (pI)

38.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 156
AciI CCGC 1 cut(s) 208
AclWI GGATC 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 114
AfaI GTAC 2 cut(s) 39, 287
AfiI CCNNNNNNNGG 1 cut(s) 78
AflIII ACRYGT 1 cut(s) 154
AluBI AGCT 2 cut(s) 17, 338
AluI AGCT 2 cut(s) 17, 338
Alw21I GWGCWC 1 cut(s) 162
Alw26I GTCTC 1 cut(s) 320
AlwI GGATC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 335
AsuC2I CCSGG 1 cut(s) 254
AsuHPI GGTGA 1 cut(s) 199
BamHI GGATCC 1 cut(s) 4
Bbv12I GWGCWC 1 cut(s) 162
BclI TGATCA 1 cut(s) 298
BcnI CCSGG 1 cut(s) 254
BcoDI GTCTC 1 cut(s) 320
BfaI CTAG 1 cut(s) 131
BglII AGATCT 1 cut(s) 49
BisI GCNGC 2 cut(s) 208, 336
BlsI GCNGC 2 cut(s) 209, 337
Bme1390I CCNGG 1 cut(s) 254
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 254
BmsI GCATC 3 cut(s) 120, 146, 247
BoxI GACNNNNGTC 1 cut(s) 312
BpuEI CTTGAG 2 cut(s) 30, 53
BpuMI CCSGG 1 cut(s) 254
BsaI GGTCTC 1 cut(s) 320
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bsc4I CCNNNNNNNGG 1 cut(s) 78
BseGI GGATG 2 cut(s) 111, 262
BseLI CCNNNNNNNGG 1 cut(s) 78
Bsh1236I CGCG 1 cut(s) 156
BsiHKAI GWGCWC 1 cut(s) 162
BsiSI CCGG 1 cut(s) 254
BslI CCNNNNNNNGG 1 cut(s) 78
BsmAI GTCTC 1 cut(s) 320
Bso31I GGTCTC 1 cut(s) 320
Bsp1286I GDGCHC 1 cut(s) 162
Bsp143I GATC 3 cut(s) 4, 49, 298
BspACI CCGC 1 cut(s) 208
BspFNI CGCG 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 320
BssMI GATC 3 cut(s) 4, 49, 298
Bst4CI ACNGT 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 158
BstF5I GGATG 2 cut(s) 111, 262
BstFNI CGCG 1 cut(s) 156
BstKTI GATC 3 cut(s) 7, 52, 301
BstMAI GTCTC 1 cut(s) 320
BstMBI GATC 3 cut(s) 4, 49, 298
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstPAI GACNNNNGTC 1 cut(s) 312
BstSCI CCNGG 1 cut(s) 252
BstUI CGCG 1 cut(s) 156
BstX2I RGATCY 2 cut(s) 4, 49
BstXI CCANNNNNNTGG 1 cut(s) 326
BstYI RGATCY 2 cut(s) 4, 49
BtsCI GGATG 2 cut(s) 111, 262
Cac8I GCNNGC 1 cut(s) 158
Csp6I GTAC 2 cut(s) 38, 286
CviAII CATG 2 cut(s) 120, 204
CviJI RGCY 2 cut(s) 17, 338
CviKI_1 RGCY 2 cut(s) 17, 338
CviQI GTAC 2 cut(s) 38, 286
DpnI GATC 3 cut(s) 6, 51, 300
DpnII GATC 3 cut(s) 4, 49, 298
Eco31I GGTCTC 1 cut(s) 320
Eco57I CTGAAG 1 cut(s) 114
FaeI CATG 2 cut(s) 123, 207
FaiI YATR 8 cut(s) 121, 205, 227, 269, 278, 283, 324, 332
FatI CATG 2 cut(s) 119, 203
FbaI TGATCA 1 cut(s) 298
Fnu4HI GCNGC 2 cut(s) 208, 336
FokI GGATG 2 cut(s) 98, 269
Fsp4HI GCNGC 2 cut(s) 208, 336
FspBI CTAG 1 cut(s) 131
GluI GCNGC 2 cut(s) 208, 336
HapII CCGG 1 cut(s) 254
Hin1II CATG 2 cut(s) 123, 207
HpaII CCGG 1 cut(s) 254
HphI GGTGA 1 cut(s) 199
Hpy188I TCNGA 1 cut(s) 59
Hpy188III TCNNGA 2 cut(s) 32, 47
HpyAV CCTTC 1 cut(s) 227
HpyCH4III ACNGT 1 cut(s) 198
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 3 cut(s) 111, 123, 137
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpySE526I ACGT 1 cut(s) 309
Hsp92II CATG 2 cut(s) 123, 207
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 3 cut(s) 4, 49, 298
LmnI GCTCC 1 cut(s) 184
LpnPI CCDG 1 cut(s) 267
LweI GCATC 3 cut(s) 120, 146, 247
MaeI CTAG 1 cut(s) 131
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 1 cut(s) 305
MalI GATC 3 cut(s) 6, 51, 300
MboI GATC 3 cut(s) 4, 49, 298
MboII GAAGA 3 cut(s) 107, 202, 241
MfeI CAATTG 1 cut(s) 106
MflI RGATCY 2 cut(s) 4, 49
MhlI GDGCHC 1 cut(s) 162
MluCI AATT 2 cut(s) 21, 106
MluI ACGCGT 1 cut(s) 154
MnlI CCTC 2 cut(s) 28, 54
MseI TTAA 2 cut(s) 171, 291
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 254
MunI CAATTG 1 cut(s) 106
MvnI CGCG 1 cut(s) 156
MwoI GCNNNNNNNGC 1 cut(s) 89
NciI CCSGG 1 cut(s) 254
NdeII GATC 3 cut(s) 4, 49, 298
NlaIII CATG 2 cut(s) 123, 207
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 305
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PkrI GCNGC 2 cut(s) 209, 337
PshAI GACNNNNGTC 1 cut(s) 312
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 2 cut(s) 4, 49
RsaI GTAC 2 cut(s) 39, 287
RsaNI GTAC 2 cut(s) 38, 286
SaqAI TTAA 2 cut(s) 171, 291
SatI GCNGC 2 cut(s) 208, 336
Sau3AI GATC 3 cut(s) 4, 49, 298
ScrFI CCNGG 1 cut(s) 254
SduI GDGCHC 1 cut(s) 162
SetI ASST 8 cut(s) 19, 39, 136, 219, 277, 297, 312, 340
SfaNI GCATC 3 cut(s) 120, 146, 247
SmlI CTYRAG 2 cut(s) 32, 45
SmoI CTYRAG 2 cut(s) 32, 45
Sse9I AATT 2 cut(s) 21, 106
SsiI CCGC 1 cut(s) 208
SspMI CTAG 1 cut(s) 131
StyD4I CCNGG 1 cut(s) 252
TaaI ACNGT 1 cut(s) 198
TaiI ACGT 1 cut(s) 312
TasI AATT 2 cut(s) 21, 106
TauI GCSGC 1 cut(s) 210
Tru1I TTAA 2 cut(s) 171, 291
Tru9I TTAA 2 cut(s) 171, 291
TseFI GTSAC 1 cut(s) 305
TseI GCWGC 1 cut(s) 335
Tsp45I GTSAC 1 cut(s) 305
TspDTI ATGAA 3 cut(s) 108, 165, 242
TspGWI ACGGA 1 cut(s) 171
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.