AT5G17167

DNA recombination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0006630
Physical Location & Seq
Forward (+)
5645309 .. 5646067
759 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G17167.1

Sequence Viewer

Length: 579 bp
ATGAGGGGTGCAATCCATCCCCCAACATGCCCCATGGAGCTTTCTGTATTTTTCTTCCCCAGAAGCTCAAACATCAACAGTTATTCACTAAAAGGTACATCAGGAAACGATGAACGCGTGTTCAAAACCCTTAATCTTGCTCCGTTGGTGAAGAAACCGTTATCATGCCGCAAACACCTTCTTATTATGAAGAAACGTCTTGCCAACAACAACCCGGATGCTCACTACATAAAAGGTATAATATGGTACTTTAACCTTGATCATTGTGACGTTGGTCTCCACCATATTGGCATAGCAGCTAACGGAGGCCAAAAAGAAGCAATCTACATAGGAAGGACTGAAGAGGGAAAAACCTATATGAGCCAATTTGAATGGGCTAAAGACACCACCATGGCTGAAACGTGTTGGAAACAAATCAAAACTTCACTAAATGGGATTAGAGTGGCGAGAAAAAGATGCTACATGATATCACTTCGCAACATGAAACCCCCCGACGTGTGCCATCCAAGAGATTTGGACAACACATGTGAGAAATGTTTTTTCTACAAACAAATGTTTAAGTTTATTTTTATGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

22.22

Weight (kDa)

9.49

Isoelectric Point (pI)

35.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_27 PF23310 58 - 110 2.1e-06 Plant tetratrico peptide repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 117
AciI CCGC 1 cut(s) 169
AcuI CTGAAG 1 cut(s) 360
AfaI GTAC 2 cut(s) 97, 248
AflIII ACRYGT 4 cut(s) 115, 401, 495, 524
AgsI TTSAA 2 cut(s) 124, 371
AjiI CACGTC 1 cut(s) 496
AluBI AGCT 3 cut(s) 40, 66, 299
AluI AGCT 3 cut(s) 40, 66, 299
Alw26I GTCTC 1 cut(s) 281
AoxI GGCC 1 cut(s) 307
ApeKI GCWGC 1 cut(s) 296
AsuC2I CCSGG 1 cut(s) 215
AsuHPI GGTGA 1 cut(s) 160
BbvI GCAGC 1 cut(s) 308
BccI CCATC 2 cut(s) 24, 510
BclI TGATCA 1 cut(s) 259
BcnI CCSGG 1 cut(s) 215
BcoDI GTCTC 1 cut(s) 281
BisI GCNGC 2 cut(s) 169, 297
BlsI GCNGC 2 cut(s) 170, 298
Bme1390I CCNGG 1 cut(s) 215
BmgBI CACGTC 1 cut(s) 496
BmrFI CCNGG 1 cut(s) 215
BmsI GCATC 2 cut(s) 208, 446
BoxI GACNNNNGTC 1 cut(s) 273
BpuMI CCSGG 1 cut(s) 215
BsaI GGTCTC 1 cut(s) 281
BsaJI CCNNGG 2 cut(s) 33, 390
BseDI CCNNGG 2 cut(s) 33, 390
BseGI GGATG 3 cut(s) 16, 223, 502
BseXI GCAGC 1 cut(s) 308
Bsh1236I CGCG 1 cut(s) 117
BshFI GGCC 1 cut(s) 309
BsiSI CCGG 1 cut(s) 215
BsmAI GTCTC 1 cut(s) 281
BsnI GGCC 1 cut(s) 309
Bso31I GGTCTC 1 cut(s) 281
Bsp143I GATC 1 cut(s) 259
Bsp19I CCATGG 2 cut(s) 33, 390
BspACI CCGC 1 cut(s) 169
BspANI GGCC 1 cut(s) 309
BspFNI CGCG 1 cut(s) 117
BspTNI GGTCTC 1 cut(s) 281
BssECI CCNNGG 2 cut(s) 33, 390
BssMI GATC 1 cut(s) 259
BssT1I CCWWGG 2 cut(s) 33, 390
Bst4CI ACNGT 2 cut(s) 80, 159
Bst6I CTCTTC 1 cut(s) 336
BstDSI CCRYGG 2 cut(s) 33, 390
BstF5I GGATG 3 cut(s) 16, 223, 502
BstFNI CGCG 1 cut(s) 117
BstKTI GATC 1 cut(s) 262
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 1 cut(s) 259
BstNSI RCATGY 2 cut(s) 30, 528
BstPAI GACNNNNGTC 1 cut(s) 273
BstSCI CCNGG 1 cut(s) 213
BstUI CGCG 1 cut(s) 117
BstV1I GCAGC 1 cut(s) 308
BstXI CCANNNNNNTGG 1 cut(s) 287
BsuRI GGCC 1 cut(s) 309
BtgI CCRYGG 2 cut(s) 33, 390
BtrI CACGTC 1 cut(s) 496
BtsCI GGATG 3 cut(s) 16, 223, 502
Csp6I GTAC 2 cut(s) 96, 247
CviAII CATG 7 cut(s) 27, 34, 165, 391, 463, 481, 525
CviJI RGCY 7 cut(s) 40, 66, 299, 309, 363, 377, 395
CviKI_1 RGCY 7 cut(s) 40, 66, 299, 309, 363, 377, 395
CviQI GTAC 2 cut(s) 96, 247
DpnI GATC 1 cut(s) 261
DpnII GATC 1 cut(s) 259
Eam1104I CTCTTC 1 cut(s) 336
EarI CTCTTC 1 cut(s) 336
Eco130I CCWWGG 2 cut(s) 33, 390
Eco31I GGTCTC 1 cut(s) 281
Eco32I GATATC 1 cut(s) 468
Eco57I CTGAAG 1 cut(s) 360
EcoRV GATATC 1 cut(s) 468
EcoT14I CCWWGG 2 cut(s) 33, 390
ErhI CCWWGG 2 cut(s) 33, 390
FaeI CATG 7 cut(s) 30, 37, 168, 394, 466, 484, 528
FatI CATG 7 cut(s) 26, 33, 164, 390, 462, 480, 524
FbaI TGATCA 1 cut(s) 259
Fnu4HI GCNGC 2 cut(s) 169, 297
FokI GGATG 3 cut(s) 3, 230, 489
Fsp4HI GCNGC 2 cut(s) 169, 297
GluI GCNGC 2 cut(s) 169, 297
HaeIII GGCC 1 cut(s) 309
HapII CCGG 1 cut(s) 215
Hin1II CATG 7 cut(s) 30, 37, 168, 394, 466, 484, 528
HpaII CCGG 1 cut(s) 215
HphI GGTGA 1 cut(s) 160
Hpy188III TCNNGA 1 cut(s) 102
Hpy99I CGWCG 1 cut(s) 497
HpyAV CCTTC 2 cut(s) 188, 327
HpyCH4III ACNGT 2 cut(s) 80, 159
HpyCH4IV ACGT 4 cut(s) 196, 270, 401, 495
HpyCH4V TGCA 1 cut(s) 11
HpySE526I ACGT 4 cut(s) 196, 270, 401, 495
Hsp92II CATG 7 cut(s) 30, 37, 168, 394, 466, 484, 528
Ksp22I TGATCA 1 cut(s) 259
Kzo9I GATC 1 cut(s) 259
LmnI GCTCC 2 cut(s) 37, 145
LpnPI CCDG 3 cut(s) 73, 87, 228
Lsp1109I GCAGC 1 cut(s) 308
LweI GCATC 2 cut(s) 208, 446
MaeII ACGT 4 cut(s) 196, 270, 401, 495
MaeIII GTNAC 1 cut(s) 266
MalI GATC 1 cut(s) 261
MboI GATC 1 cut(s) 259
MboII GAAGA 4 cut(s) 46, 163, 202, 353
MluCI AATT 1 cut(s) 365
MluI ACGCGT 1 cut(s) 115
MmeI TCCRAC 1 cut(s) 386
MnlI CCTC 2 cut(s) 299, 337
MseI TTAA 3 cut(s) 132, 252, 558
MslI CAYNNNNRTG 1 cut(s) 389
MspI CCGG 1 cut(s) 215
MspR9I CCNGG 1 cut(s) 215
MvnI CGCG 1 cut(s) 117
NciI CCSGG 1 cut(s) 215
NcoI CCATGG 2 cut(s) 33, 390
NdeII GATC 1 cut(s) 259
NlaIII CATG 7 cut(s) 30, 37, 168, 394, 466, 484, 528
NmuCI GTSAC 1 cut(s) 266
NspI RCATGY 2 cut(s) 30, 528
PciI ACATGT 1 cut(s) 524
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PkrI GCNGC 2 cut(s) 170, 298
PscI ACATGT 1 cut(s) 524
PshAI GACNNNNGTC 1 cut(s) 273
RsaI GTAC 2 cut(s) 97, 248
RsaNI GTAC 2 cut(s) 96, 247
RseI CAYNNNNRTG 1 cut(s) 389
SaqAI TTAA 3 cut(s) 132, 252, 558
SatI GCNGC 2 cut(s) 169, 297
Sau3AI GATC 1 cut(s) 259
ScrFI CCNGG 1 cut(s) 215
SfaNI GCATC 2 cut(s) 208, 446
SmiMI CAYNNNNRTG 1 cut(s) 389
Sse9I AATT 1 cut(s) 365
SsiI CCGC 1 cut(s) 169
StyD4I CCNGG 1 cut(s) 213
StyI CCWWGG 2 cut(s) 33, 390
TaaI ACNGT 2 cut(s) 80, 159
TaiI ACGT 4 cut(s) 199, 273, 404, 498
TasI AATT 1 cut(s) 365
TauI GCSGC 1 cut(s) 171
Tru1I TTAA 3 cut(s) 132, 252, 558
Tru9I TTAA 3 cut(s) 132, 252, 558
TseFI GTSAC 1 cut(s) 266
TseI GCWGC 1 cut(s) 296
Tsp45I GTSAC 1 cut(s) 266
TspDTI ATGAA 3 cut(s) 126, 203, 497
TspGWI ACGGA 2 cut(s) 132, 318
XceI RCATGY 2 cut(s) 30, 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.