Rroxscaffold_5G00364220

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0006630
Physical Location & Seq
Forward (+)
45489381 .. 45490086
706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00364220.1

Sequence Viewer

Length: 459 bp
ATGATCGAAAGCAGCCAAACGTCACCGTTTCGGGCTCCAAGTTCTAAGATCACAGGTGGCAGCGGAAAAATGCGCAGCCTCGAGACGGCGCCGTTTTGGGTAATTCGTCATCCAGCCGCCCCACTGCCCCAGGAAGTTAAATCCAAGTCACGAATCCTGGCGTCTCTCTCAGCGACAAGGAATGAGGTTTTTTCTTCTTTGGCAAAGATAAGGAAGAAGGTTAGAAAGCGTAGGTCAAGAAAGGAAGGTCATAACGTTTCGACCATGAAGTCACTTCCCAACGATCTTTTGTTGGAAGTGATTGCTAAGGTTGCTTCGAATTCTTTCAATGATCTTTGCCGCATTAGGCAAACTTGCAAGGAGTTTAACCAGGCGGGGCAAGAGGACTATATTTTTCAGCATGTATCGATCGAAAAGTTTCCACTCTTTCCTTTTGAGAAAAAGGAAACGATTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

152

Amino Acids

17.27

Weight (kDa)

10.21

Isoelectric Point (pI)

63.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 90 - 137 2.1e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 268
Acc16I TGCGCA 1 cut(s) 74
AccB1I GGYRCC 1 cut(s) 88
AciI CCGC 4 cut(s) 63, 117, 340, 374
AclI AACGTT 1 cut(s) 255
AcsI RAATTY 1 cut(s) 319
AcyI GRCGYC 2 cut(s) 89, 161
AfiI CCNNNNNNNGG 1 cut(s) 85
AgsI TTSAA 1 cut(s) 328
AjnI CCWGG 3 cut(s) 129, 156, 369
Alw26I GTCTC 2 cut(s) 77, 168
Ama87I CYCGRG 1 cut(s) 80
ApeKI GCWGC 3 cut(s) 12, 60, 75
ApoI RAATTY 1 cut(s) 319
Asp700I GAANNNNTTC 2 cut(s) 323, 417
AspLEI GCGC 2 cut(s) 75, 91
AsuHPI GGTGA 1 cut(s) 15
AsuII TTCGAA 1 cut(s) 317
AvaI CYCGRG 1 cut(s) 80
BanI GGYRCC 1 cut(s) 88
BanII GRGCYC 1 cut(s) 37
BbvI GCAGC 3 cut(s) 24, 72, 87
BceAI ACGGC 2 cut(s) 76, 102
BciT130I CCWGG 3 cut(s) 131, 158, 371
BcoDI GTCTC 2 cut(s) 77, 168
BfoI RGCGCY 1 cut(s) 92
BisI GCNGC 5 cut(s) 13, 61, 76, 117, 340
BlsI GCNGC 5 cut(s) 14, 62, 77, 118, 341
Bme1390I CCNGG 3 cut(s) 131, 158, 371
BmeT110I CYCGRG 1 cut(s) 80
BmiI GGNNCC 2 cut(s) 36, 90
BmrFI CCNGG 3 cut(s) 131, 158, 371
Bpu10I CCTNAGC 1 cut(s) 306
Bpu14I TTCGAA 1 cut(s) 317
Bsa29I ATCGAT 1 cut(s) 407
BsaHI GRCGYC 2 cut(s) 89, 161
BsaJI CCNNGG 1 cut(s) 129
Bsc4I CCNNNNNNNGG 1 cut(s) 85
BseBI CCWGG 3 cut(s) 131, 158, 371
BseCI ATCGAT 1 cut(s) 407
BseDI CCNNGG 1 cut(s) 129
BseGI GGATG 1 cut(s) 109
BseLI CCNNNNNNNGG 1 cut(s) 85
BseMII CTCAG 1 cut(s) 183
BseXI GCAGC 3 cut(s) 24, 72, 87
Bsh1285I CGRYCG 1 cut(s) 411
BshNI GGYRCC 1 cut(s) 88
BshVI ATCGAT 1 cut(s) 407
BsiEI CGRYCG 1 cut(s) 411
BsiHKCI CYCGRG 1 cut(s) 80
BslI CCNNNNNNNGG 1 cut(s) 85
BsmAI GTCTC 2 cut(s) 77, 168
BsmBI CGTCTC 2 cut(s) 77, 168
BsoBI CYCGRG 1 cut(s) 80
Bsp119I TTCGAA 1 cut(s) 317
Bsp1286I GDGCHC 1 cut(s) 37
Bsp143I GATC 5 cut(s) 3, 48, 283, 331, 408
BspACI CCGC 4 cut(s) 63, 117, 340, 374
BspCNI CTCAG 1 cut(s) 182
BspDI ATCGAT 1 cut(s) 407
BspLI GGNNCC 2 cut(s) 36, 90
BspT104I TTCGAA 1 cut(s) 317
BspT107I GGYRCC 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 5 cut(s) 3, 48, 283, 331, 408
BssNI GRCGYC 2 cut(s) 89, 161
Bst2UI CCWGG 3 cut(s) 131, 158, 371
Bst4CI ACNGT 1 cut(s) 27
BstACI GRCGYC 2 cut(s) 89, 161
BstBI TTCGAA 1 cut(s) 317
BstDEI CTNAG 3 cut(s) 45, 169, 306
BstF5I GGATG 1 cut(s) 109
BstH2I RGCGCY 1 cut(s) 92
BstHHI GCGC 2 cut(s) 75, 91
BstKTI GATC 5 cut(s) 6, 51, 286, 334, 411
BstMAI GTCTC 2 cut(s) 77, 168
BstMBI GATC 5 cut(s) 3, 48, 283, 331, 408
BstMCI CGRYCG 1 cut(s) 411
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstNI CCWGG 3 cut(s) 131, 158, 371
BstNSI RCATGY 1 cut(s) 404
BstSCI CCNGG 3 cut(s) 129, 156, 369
BstV1I GCAGC 3 cut(s) 24, 72, 87
Bsu15I ATCGAT 1 cut(s) 407
BsuTUI ATCGAT 1 cut(s) 407
BtsCI GGATG 1 cut(s) 109
BtsI GCAGTG 1 cut(s) 122
BtsIMutI CAGTG 1 cut(s) 122
CfoI GCGC 2 cut(s) 75, 91
ClaI ATCGAT 1 cut(s) 407
CseI GACGC 1 cut(s) 150
CviAII CATG 2 cut(s) 265, 401
CviJI RGCY 4 cut(s) 15, 35, 78, 116
CviKI_1 RGCY 4 cut(s) 15, 35, 78, 116
DdeI CTNAG 3 cut(s) 45, 169, 306
DinI GGCGCC 1 cut(s) 90
DpnI GATC 5 cut(s) 5, 50, 285, 333, 410
DpnII GATC 5 cut(s) 3, 48, 283, 331, 408
DrdI GACNNNNNNGTC 1 cut(s) 268
DseDI GACNNNNNNGTC 1 cut(s) 268
Eco24I GRGCYC 1 cut(s) 37
Eco88I CYCGRG 1 cut(s) 80
EcoRI GAATTC 1 cut(s) 319
EcoRII CCWGG 3 cut(s) 129, 156, 369
EcoT38I GRGCYC 1 cut(s) 37
EgeI GGCGCC 1 cut(s) 90
EheI GGCGCC 1 cut(s) 90
Esp3I CGTCTC 2 cut(s) 77, 168
FaeI CATG 2 cut(s) 268, 404
FaiI YATR 4 cut(s) 252, 266, 390, 402
FatI CATG 2 cut(s) 264, 400
FauI CCCGC 1 cut(s) 367
Fnu4HI GCNGC 5 cut(s) 13, 61, 76, 117, 340
FokI GGATG 1 cut(s) 96
FriOI GRGCYC 1 cut(s) 37
Fsp4HI GCNGC 5 cut(s) 13, 61, 76, 117, 340
FspI TGCGCA 1 cut(s) 74
GlaI GCGC 2 cut(s) 74, 90
GluI GCNGC 5 cut(s) 13, 61, 76, 117, 340
HaeII RGCGCY 1 cut(s) 92
HgaI GACGC 1 cut(s) 150
HhaI GCGC 2 cut(s) 75, 91
Hin1I GRCGYC 2 cut(s) 89, 161
Hin1II CATG 2 cut(s) 268, 404
Hin6I GCGC 2 cut(s) 73, 89
HinP1I GCGC 2 cut(s) 73, 89
HinfI GANTC 1 cut(s) 153
HphI GGTGA 1 cut(s) 15
Hpy188I TCNGA 1 cut(s) 458
Hpy188III TCNNGA 3 cut(s) 82, 150, 237
HpyAV CCTTC 2 cut(s) 211, 239
HpyCH4III ACNGT 1 cut(s) 27
HpyCH4IV ACGT 2 cut(s) 20, 255
HpyCH4V TGCA 1 cut(s) 357
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
HpyF3I CTNAG 3 cut(s) 45, 169, 306
HpySE526I ACGT 2 cut(s) 20, 255
Hsp92I GRCGYC 2 cut(s) 89, 161
Hsp92II CATG 2 cut(s) 268, 404
HspAI GCGC 2 cut(s) 73, 89
KasI GGCGCC 1 cut(s) 88
Kzo9I GATC 5 cut(s) 3, 48, 283, 331, 408
LmnI GCTCC 1 cut(s) 40
LpnPI CCDG 8 cut(s) 39, 116, 126, 143, 143, 170, 356, 383
Lsp1109I GCAGC 3 cut(s) 24, 72, 87
MaeII ACGT 2 cut(s) 20, 255
MaeIII GTNAC 3 cut(s) 21, 147, 270
MalI GATC 5 cut(s) 5, 50, 285, 333, 410
MboI GATC 5 cut(s) 3, 48, 283, 331, 408
MboII GAAGA 2 cut(s) 186, 226
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 2 cut(s) 102, 319
Mly113I GGCGCC 1 cut(s) 89
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 3 cut(s) 89, 178, 376
MroXI GAANNNNTTC 2 cut(s) 323, 417
MseI TTAA 2 cut(s) 138, 366
MspA1I CMGCKG 1 cut(s) 63
MspR9I CCNGG 3 cut(s) 131, 158, 371
MvaI CCWGG 3 cut(s) 131, 158, 371
MwoI GCNNNNNNNGC 1 cut(s) 311
NarI GGCGCC 1 cut(s) 89
NdeII GATC 5 cut(s) 3, 48, 283, 331, 408
NlaIII CATG 2 cut(s) 268, 404
NlaIV GGNNCC 2 cut(s) 36, 90
NmuCI GTSAC 3 cut(s) 21, 147, 270
NsbI TGCGCA 1 cut(s) 74
NspI RCATGY 1 cut(s) 404
NspV TTCGAA 1 cut(s) 317
PaeR7I CTCGAG 1 cut(s) 80
PdmI GAANNNNTTC 2 cut(s) 323, 417
PfeI GAWTC 1 cut(s) 153
PkrI GCNGC 5 cut(s) 14, 62, 77, 118, 341
Ple19I CGATCG 1 cut(s) 411
PluTI GGCGCC 1 cut(s) 92
Psp1406I AACGTT 1 cut(s) 255
Psp6I CCWGG 3 cut(s) 129, 156, 369
PspGI CCWGG 3 cut(s) 129, 156, 369
PspN4I GGNNCC 2 cut(s) 36, 90
PvuI CGATCG 1 cut(s) 411
SaqAI TTAA 2 cut(s) 138, 366
SatI GCNGC 5 cut(s) 13, 61, 76, 117, 340
Sau3AI GATC 5 cut(s) 3, 48, 283, 331, 408
ScrFI CCNGG 3 cut(s) 131, 158, 371
SduI GDGCHC 1 cut(s) 37
SetI ASST 8 cut(s) 23, 58, 189, 222, 236, 250, 258, 312
SfoI GGCGCC 1 cut(s) 90
Sfr274I CTCGAG 1 cut(s) 80
SfuI TTCGAA 1 cut(s) 317
SlaI CTCGAG 1 cut(s) 80
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
Sse9I AATT 2 cut(s) 102, 319
SsiI CCGC 4 cut(s) 63, 117, 340, 374
SspDI GGCGCC 1 cut(s) 88
StyD4I CCNGG 3 cut(s) 129, 156, 369
TaaI ACNGT 1 cut(s) 27
TaiI ACGT 2 cut(s) 23, 258
TaqI TCGA 6 cut(s) 6, 81, 260, 317, 407, 411
TasI AATT 2 cut(s) 102, 319
TauI GCSGC 2 cut(s) 119, 342
TfiI GAWTC 1 cut(s) 153
Tru1I TTAA 2 cut(s) 138, 366
Tru9I TTAA 2 cut(s) 138, 366
TscAI CASTG 1 cut(s) 129
TseFI GTSAC 3 cut(s) 21, 147, 270
TseI GCWGC 3 cut(s) 12, 60, 75
Tsp45I GTSAC 3 cut(s) 21, 147, 270
TspDTI ATGAA 1 cut(s) 281
TspRI CASTG 1 cut(s) 129
XapI RAATTY 1 cut(s) 319
XceI RCATGY 1 cut(s) 404
XhoI CTCGAG 1 cut(s) 80
XmnI GAANNNNTTC 2 cut(s) 323, 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.