Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004902.1

Orthogroup ID

OG0009334

Physical Location & Seq

Genomic Coordinates Forward (+)

12852 .. 13256

Gene Structure 405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004902.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

atgggcacgatcatccccacgcagcttgattactacgaagacatgtggaagcttgaatccgatgccacactggtagcattggtcaaaggtgaagatggacggacggctttggtgctggaccggacggtgttccatccgcaaggcggcggtcaaccggcggacacaggcttcgtcgccgtcgccggctcggaggtcaagttcgtcgtgcaagatgtgcggtccaaggacggtgtagtaagcaatcgaattcaatttgattttttcatttttgtttgtggtaaaggtgtttggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004812 GO:0004813 GO:0005488 GO:0006082 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006412 GO:0006418 GO:0006419 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0031406 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0036094 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043412 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA-synt_2c tRNA_SAD

Protein Analysis

97

Amino Acids

10.64

Weight (kDa)

4.72

Isoelectric Point (pI)

21.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16565 AT3G16565 AT3G16565 AT3G16565 AT3G16565 AT3G16565
fragaria_vesca	FvH4_4g17960
malus_domestica	MD13G1169000.v1.1 MD16G1169600.v1.1
prunus_persica	Prupe.1G137400_v2.0.a1
pyrus_communis	pycom13g14460
rosa_chinensis	RchiOBHm_Chr4g0422131
rosa_laevigata	RLG00000007632
rosa_multiflora	Rmu_sc0004902.1_g000006 Rmu_sc0036261.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364210
rosa_rugosa	Rorug04G0177600
rosa_samantha	Rh4AG237100 Rh4BG239900 Rh4CG251800 Rh4DG236000
rosa_wichuraiana	Rw4G020510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	137, 144, 147, 158, 217
AcsI	RAATTY	1 cut(s)	246
AfiI	CCNNNNNNNGG	1 cut(s)	143
AflIII	ACRYGT	1 cut(s)	42
AgsI	TTSAA	2 cut(s)	56, 251
AloI	GAACNNNNNNTCC	2 cut(s)	182, 214
AluBI	AGCT	2 cut(s)	25, 52
AluI	AGCT	2 cut(s)	25, 52
ApeKI	GCWGC	1 cut(s)	22
ApoI	RAATTY	1 cut(s)	246
ArsI	GACNNNNNNTTYG	2 cut(s)	152, 184
AspS9I	GGNCC	2 cut(s)	118, 219
AsuHPI	GGTGA	1 cut(s)	101
AvaII	GGWCC	2 cut(s)	118, 219
BaeGI	GKGCMC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	2 cut(s)	89, 141
BceAI	ACGGC	2 cut(s)	120, 161
BisI	GCNGC	2 cut(s)	23, 145
BlsI	GCNGC	2 cut(s)	24, 146
Bme18I	GGWCC	2 cut(s)	118, 219
BmgT120I	GGNCC	2 cut(s)	118, 219
BmsI	GCATC	1 cut(s)	52
BpiI	GAAGAC	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	222
BsaWI	WCCGGW	1 cut(s)	120
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse118I	RCCGGY	2 cut(s)	154, 182
Bse1I	ACTGG	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	2 cut(s)	12, 133
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseNI	ACTGG	1 cut(s)	75
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	34
BsiSI	CCGG	3 cut(s)	121, 155, 183
BslI	CCNNNNNNNGG	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	9
BspACI	CCGC	5 cut(s)	137, 144, 147, 158, 217
BsrFI	RCCGGY	2 cut(s)	154, 182
BsrI	ACTGG	1 cut(s)	75
BssAI	RCCGGY	2 cut(s)	154, 182
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	1 cut(s)	9
BssT1I	CCWWGG	1 cut(s)	222
Bst4CI	ACNGT	2 cut(s)	127, 230
BstAPI	GCANNNNNTGC	1 cut(s)	214
BstC8I	GCNNGC	1 cut(s)	184
BstF5I	GGATG	2 cut(s)	12, 133
BstKTI	GATC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	9
BstMWI	GCNNNNNNNGC	1 cut(s)	214
BstNSI	RCATGY	1 cut(s)	46
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	34
BstV2I	GAAGAC	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	12, 133
BtsIMutI	CAGTG	1 cut(s)	68
Cac8I	GCNNGC	1 cut(s)	184
Cfr10I	RCCGGY	2 cut(s)	154, 182
Cfr13I	GGNCC	2 cut(s)	118, 219
CspCI	CAANNNNNGTGG	2 cut(s)	7, 42
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	5 cut(s)	25, 52, 107, 168, 186
CviKI_1	RGCY	5 cut(s)	25, 52, 107, 168, 186
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
EciI	GGCGGA	1 cut(s)	173
Eco130I	CCWWGG	1 cut(s)	222
Eco47I	GGWCC	2 cut(s)	118, 219
EcoRI	GAATTC	1 cut(s)	246
EcoT14I	CCWWGG	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	1 cut(s)	46
FaiI	YATR	1 cut(s)	44
FatI	CATG	1 cut(s)	42
Fnu4HI	GCNGC	2 cut(s)	23, 145
FokI	GGATG	1 cut(s)	120
Fsp4HI	GCNGC	2 cut(s)	23, 145
GluI	GCNGC	2 cut(s)	23, 145
HapII	CCGG	3 cut(s)	121, 155, 183
Hin1II	CATG	1 cut(s)	46
HincII	GTYRAC	1 cut(s)	152
HindII	GTYRAC	1 cut(s)	152
HindIII	AAGCTT	1 cut(s)	50
HinfI	GANTC	1 cut(s)	56
HpaII	CCGG	3 cut(s)	121, 155, 183
HphI	GGTGA	1 cut(s)	101
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188I	TCNGA	2 cut(s)	61, 190
Hpy8I	GTNNAC	1 cut(s)	152
Hpy99I	CGWCG	3 cut(s)	176, 182, 206
HpyCH4III	ACNGT	2 cut(s)	127, 230
HpyCH4V	TGCA	1 cut(s)	208
HpyF10VI	GCNNNNNNNGC	1 cut(s)	214
Hsp92II	CATG	1 cut(s)	46
KroI	GCCGGC	1 cut(s)	182
KroNI	GCCGGC	1 cut(s)	184
Kzo9I	GATC	1 cut(s)	9
LpnPI	CCDG	6 cut(s)	56, 101, 134, 150, 168, 196
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	1 cut(s)	52
MalI	GATC	1 cut(s)	11
MboI	GATC	1 cut(s)	9
MboII	GAAGA	2 cut(s)	50, 104
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	2 cut(s)	246, 251
MnlI	CCTC	1 cut(s)	184
MroNI	GCCGGC	1 cut(s)	182
MspI	CCGG	3 cut(s)	121, 155, 183
MwoI	GCNNNNNNNGC	1 cut(s)	214
NaeI	GCCGGC	1 cut(s)	184
NdeII	GATC	1 cut(s)	9
NgoMIV	GCCGGC	1 cut(s)	182
NlaIII	CATG	1 cut(s)	46
NspI	RCATGY	1 cut(s)	46
PciI	ACATGT	1 cut(s)	42
PdiI	GCCGGC	1 cut(s)	184
PfeI	GAWTC	1 cut(s)	56
PkrI	GCNGC	2 cut(s)	24, 146
PscI	ACATGT	1 cut(s)	42
PspPI	GGNCC	2 cut(s)	118, 219
SatI	GCNGC	2 cut(s)	23, 145
Sau3AI	GATC	1 cut(s)	9
Sau96I	GGNCC	2 cut(s)	118, 219
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	5 cut(s)	27, 54, 91, 195, 286
SfaNI	GCATC	1 cut(s)	52
SinI	GGWCC	2 cut(s)	118, 219
Sse9I	AATT	2 cut(s)	246, 251
SsiI	CCGC	5 cut(s)	137, 144, 147, 158, 217
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	2 cut(s)	127, 230
TaqI	TCGA	1 cut(s)	244
TasI	AATT	2 cut(s)	246, 251
TauI	GCSGC	1 cut(s)	147
TfiI	GAWTC	1 cut(s)	56
TscAI	CASTG	1 cut(s)	75
TseI	GCWGC	1 cut(s)	22
TspDTI	ATGAA	1 cut(s)	253
TspGWI	ACGGA	1 cut(s)	115
TspRI	CASTG	1 cut(s)	75
VpaK11BI	GGWCC	2 cut(s)	118, 219
XapI	RAATTY	1 cut(s)	246
XceI	RCATGY	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.