FvH4_4g19280

Protein of unknown function (DUF1218)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0014135
Physical Location & Seq
Reverse (-)
22960231 .. 22961723
1493 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g19280.t1

Sequence Viewer

Length: 795 bp
ATGCCCAAGACAAAGGCAGTCACACATGCAGATCTTTCACCGAGCCGCCCACGCTCCGCTTTAAGCAGCAAAACAGGCCTTTTTCTCATGGTCTTGACCATTCTTTGTGGCCTTCTTTGCTTCATCCTATGCTTAATTGCTGAAGCTACTCGCTCTCGGGTTACATGGCTGAGCAGCGGTACTAATGAAGATGGGAAGGAAGGAAAATACGAGTGCATCTATAGTGGTAGTGGGAAAACACCTTTGTTAAGTGCAGCCAGTGCATTTTTGGGGTTGGCAATTATCATGGTGGTGGAGCATGGATACATGTTGTATGCAATTACCAACTCCCCACCTTCAGTCTTGCTTACATGGGAGCCTCATGATTCAGCTTCTGCCAAGTCTTTGAAATGGCACGCTGCCATTTTCTTCGTCGCAACTTGGATCTGTTTTGCTGTTGGGGAGATTTTGCTATTGATTGGCCTAAGTGTGGAGTCAGGCCATTTGAAAAACTGGGCTAGGCCAAAACCCAATTGCCTTGTGATCAGAGAAGGTGTGTTCTCTGCAGCAGGAGTGTTTGCCTTGACTACTGTTTTTCTGGCCGCCGGATTATACTTGACGGCGTTGCGTGCACAGAGAATTTCCCAAGACCAAGAAAATGTAAGGCGAGAGGTGATCGAGGCCGCTGTACTTTATGCATCTCCACCAATTTCACCTCATCTAACAACCATTCCAAGGGAGAACCCCATTTTCAGAGAAAACCAGAATGAGCAGCCATCAGTACTTGTGCTCCAAGCAGCTTTAAGCAAACACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1218

Protein Analysis

265

Amino Acids

28.7

Weight (kDa)

8.74

Isoelectric Point (pI)

42.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1218 PF06749 88 - 191 1.7e-18 Protein of unknown function (DUF1218)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014135)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49320
fragaria_vesca FvH4_4g19280
malus_domestica MD13G1158800.v1.1 MD16G1159000.v1.1
prunus_persica Prupe.1G125800_v2.0.a1
pyrus_communis pycom13g13570 pycom16g13400
rosa_chinensis RchiOBHm_Chr4g0424271
rosa_laevigata RLG00000007491
rosa_multiflora Rmu_sc0002260.1_g000024
rosa_roxburghii Rroxscaffold_5G00366210
rosa_rugosa Rorug04G0194900
rosa_samantha Rh4AG252200 Rh4BG257700 Rh4CG268300 Rh4DG252000
rosa_wichuraiana Rw4G021750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 46, 57, 177, 582, 663
AclWI GGATC 1 cut(s) 431
AcoI YGGCCR 1 cut(s) 579
AcsI RAATTY 1 cut(s) 618
AcuI CTGAAG 2 cut(s) 162, 321
AfaI GTAC 3 cut(s) 181, 669, 762
AfiI CCNNNNNNNGG 2 cut(s) 469, 714
AflIII ACRYGT 1 cut(s) 306
AgsI TTSAA 2 cut(s) 388, 487
AluBI AGCT 3 cut(s) 146, 371, 779
AluI AGCT 3 cut(s) 146, 371, 779
Alw21I GWGCWC 2 cut(s) 613, 771
Alw44I GTGCAC 1 cut(s) 609
AlwI GGATC 1 cut(s) 431
AlwNI CAGNNNCTG 1 cut(s) 374
Ama87I CYCGRG 1 cut(s) 156
AoxI GGCC 7 cut(s) 76, 109, 460, 478, 500, 579, 660
ApaLI GTGCAC 1 cut(s) 609
ApeKI GCWGC 7 cut(s) 66, 174, 254, 398, 545, 751, 776
ApoI RAATTY 1 cut(s) 618
AsuHPI GGTGA 3 cut(s) 30, 664, 684
AvaI CYCGRG 1 cut(s) 156
BaeGI GKGCMC 1 cut(s) 613
Bbv12I GWGCWC 2 cut(s) 613, 771
BbvI GCAGC 7 cut(s) 78, 186, 266, 385, 557, 763, 788
BccI CCATC 2 cut(s) 185, 763
BceAI ACGGC 1 cut(s) 615
BciVI GTATCC 1 cut(s) 296
BclI TGATCA 1 cut(s) 522
BfaI CTAG 1 cut(s) 498
BfmI CTRYAG 2 cut(s) 220, 543
BfuI GTATCC 1 cut(s) 296
BglII AGATCT 1 cut(s) 31
BlpI GCTNAGC 1 cut(s) 170
BmcAI AGTACT 1 cut(s) 762
BmeT110I CYCGRG 1 cut(s) 156
BmiI GGNNCC 1 cut(s) 357
BmrI ACTGGG 1 cut(s) 502
BmsI GCATC 2 cut(s) 225, 686
BmuI ACTGGG 1 cut(s) 502
Bpu1102I GCTNAGC 1 cut(s) 170
BsaJI CCNNGG 1 cut(s) 713
BsaXI ACNNNNNCTCC 2 cut(s) 753, 783
Bsc4I CCNNNNNNNGG 2 cut(s) 469, 714
Bse1I ACTGG 2 cut(s) 258, 497
BseDI CCNNGG 1 cut(s) 713
BseGI GGATG 1 cut(s) 123
BseLI CCNNNNNNNGG 2 cut(s) 469, 714
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 2 cut(s) 258, 497
BseSI GKGCMC 1 cut(s) 613
BseXI GCAGC 7 cut(s) 78, 186, 266, 385, 557, 763, 788
BsgI GTGCAG 1 cut(s) 273
BshFI GGCC 7 cut(s) 78, 111, 462, 480, 502, 581, 662
BsiHKAI GWGCWC 2 cut(s) 613, 771
BsiHKCI CYCGRG 1 cut(s) 156
BsiSI CCGG 1 cut(s) 585
BslI CCNNNNNNNGG 2 cut(s) 469, 714
BsnI GGCC 7 cut(s) 78, 111, 462, 480, 502, 581, 662
BsoBI CYCGRG 1 cut(s) 156
Bsp1286I GDGCHC 2 cut(s) 613, 771
Bsp143I GATC 4 cut(s) 31, 423, 522, 654
Bsp1720I GCTNAGC 1 cut(s) 170
BspACI CCGC 5 cut(s) 46, 57, 177, 582, 663
BspANI GGCC 7 cut(s) 78, 111, 462, 480, 502, 581, 662
BspCNI CTCAG 1 cut(s) 162
BspHI TCATGA 1 cut(s) 361
BspLI GGNNCC 1 cut(s) 357
BspMAI CTGCAG 1 cut(s) 547
BspPI GGATC 1 cut(s) 431
BsrI ACTGG 2 cut(s) 258, 497
BssECI CCNNGG 1 cut(s) 713
BssMI GATC 4 cut(s) 31, 423, 522, 654
BssT1I CCWWGG 1 cut(s) 713
Bst4CI ACNGT 1 cut(s) 571
BstAPI GCANNNNNTGC 1 cut(s) 260
BstC8I GCNNGC 2 cut(s) 396, 609
BstDEI CTNAG 2 cut(s) 170, 464
BstF5I GGATG 1 cut(s) 123
BstKTI GATC 4 cut(s) 34, 426, 525, 657
BstMBI GATC 4 cut(s) 31, 423, 522, 654
BstMWI GCNNNNNNNGC 5 cut(s) 51, 75, 117, 260, 608
BstNSI RCATGY 2 cut(s) 29, 310
BstSFI CTRYAG 2 cut(s) 220, 543
BstSLI GKGCMC 1 cut(s) 613
BstV1I GCAGC 7 cut(s) 78, 186, 266, 385, 557, 763, 788
BstX2I RGATCY 2 cut(s) 31, 423
BstYI RGATCY 2 cut(s) 31, 423
BsuI GTATCC 1 cut(s) 296
BsuRI GGCC 7 cut(s) 78, 111, 462, 480, 502, 581, 662
BtsCI GGATG 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 265
Cac8I GCNNGC 2 cut(s) 396, 609
CaiI CAGNNNCTG 1 cut(s) 374
CciI TCATGA 1 cut(s) 361
Csp6I GTAC 3 cut(s) 180, 668, 761
CviAII CATG 8 cut(s) 26, 88, 165, 286, 299, 307, 351, 362
CviQI GTAC 3 cut(s) 180, 668, 761
DdeI CTNAG 2 cut(s) 170, 464
DpnI GATC 4 cut(s) 33, 425, 524, 656
DpnII GATC 4 cut(s) 31, 423, 522, 654
EaeI YGGCCR 1 cut(s) 579
Eco130I CCWWGG 1 cut(s) 713
Eco147I AGGCCT 1 cut(s) 78
Eco57I CTGAAG 2 cut(s) 162, 321
Eco88I CYCGRG 1 cut(s) 156
EcoT14I CCWWGG 1 cut(s) 713
EcoT22I ATGCAT 1 cut(s) 679
ErhI CCWWGG 1 cut(s) 713
FaeI CATG 8 cut(s) 29, 91, 168, 289, 302, 310, 354, 365
FatI CATG 8 cut(s) 25, 87, 164, 285, 298, 306, 350, 361
FbaI TGATCA 1 cut(s) 522
FokI GGATG 1 cut(s) 110
FspBI CTAG 1 cut(s) 498
HaeIII GGCC 7 cut(s) 78, 111, 462, 480, 502, 581, 662
HapII CCGG 1 cut(s) 585
Hin1II CATG 8 cut(s) 29, 91, 168, 289, 302, 310, 354, 365
HinfI GANTC 2 cut(s) 365, 473
HpaII CCGG 1 cut(s) 585
HphI GGTGA 3 cut(s) 30, 664, 684
Hpy166II GTNNAC 1 cut(s) 611
Hpy188I TCNGA 2 cut(s) 527, 734
Hpy188III TCNNGA 2 cut(s) 94, 362
Hpy8I GTNNAC 1 cut(s) 611
Hpy99I CGWCG 1 cut(s) 416
HpyAV CCTTC 5 cut(s) 122, 190, 194, 345, 524
HpyCH4III ACNGT 1 cut(s) 571
HpyCH4V TGCA 8 cut(s) 29, 216, 254, 263, 317, 545, 611, 677
HpyF10VI GCNNNNNNNGC 5 cut(s) 51, 75, 117, 260, 608
HpyF3I CTNAG 2 cut(s) 170, 464
Hsp92II CATG 8 cut(s) 29, 91, 168, 289, 302, 310, 354, 365
Ksp22I TGATCA 1 cut(s) 522
Kzo9I GATC 4 cut(s) 31, 423, 522, 654
LmnI GCTCC 4 cut(s) 59, 295, 355, 774
LpnPI CCDG 8 cut(s) 60, 271, 462, 478, 534, 563, 598, 755
Lsp1109I GCAGC 7 cut(s) 78, 186, 266, 385, 557, 763, 788
LweI GCATC 2 cut(s) 225, 686
MaeI CTAG 1 cut(s) 498
MaeIII GTNAC 2 cut(s) 19, 160
MalI GATC 4 cut(s) 33, 425, 524, 656
MboI GATC 4 cut(s) 31, 423, 522, 654
MboII GAAGA 2 cut(s) 200, 400
MfeI CAATTG 1 cut(s) 511
MflI RGATCY 2 cut(s) 31, 423
MhlI GDGCHC 2 cut(s) 613, 771
MluCI AATT 6 cut(s) 135, 279, 318, 511, 618, 687
MlyI GAGTC 1 cut(s) 482
MnlI CCTC 4 cut(s) 369, 643, 652, 705
Mph1103I ATGCAT 1 cut(s) 679
MseI TTAA 4 cut(s) 62, 134, 248, 782
MslI CAYNNNNRTG 1 cut(s) 290
MspA1I CMGCKG 2 cut(s) 177, 665
MspI CCGG 1 cut(s) 585
MunI CAATTG 1 cut(s) 511
MwoI GCNNNNNNNGC 5 cut(s) 51, 75, 117, 260, 608
NdeII GATC 4 cut(s) 31, 423, 522, 654
NlaIII CATG 8 cut(s) 29, 91, 168, 289, 302, 310, 354, 365
NlaIV GGNNCC 1 cut(s) 357
NmuCI GTSAC 1 cut(s) 19
NsiI ATGCAT 1 cut(s) 679
NspI RCATGY 2 cut(s) 29, 310
PagI TCATGA 1 cut(s) 361
PceI AGGCCT 1 cut(s) 78
PciI ACATGT 1 cut(s) 306
PfeI GAWTC 1 cut(s) 365
PleI GAGTC 1 cut(s) 481
PpsI GAGTC 1 cut(s) 481
PscI ACATGT 1 cut(s) 306
PspN4I GGNNCC 1 cut(s) 357
PstI CTGCAG 1 cut(s) 547
PstNI CAGNNNCTG 1 cut(s) 374
PsuI RGATCY 2 cut(s) 31, 423
RsaI GTAC 3 cut(s) 181, 669, 762
RsaNI GTAC 3 cut(s) 180, 668, 761
RseI CAYNNNNRTG 1 cut(s) 290
SaqAI TTAA 4 cut(s) 62, 134, 248, 782
Sau3AI GATC 4 cut(s) 31, 423, 522, 654
ScaI AGTACT 1 cut(s) 762
SchI GAGTC 1 cut(s) 482
SduI GDGCHC 2 cut(s) 613, 771
SetI ASST 8 cut(s) 148, 244, 337, 373, 535, 654, 697, 781
SfaNI GCATC 2 cut(s) 225, 686
SfcI CTRYAG 2 cut(s) 220, 543
SmiMI CAYNNNNRTG 1 cut(s) 290
Sse9I AATT 6 cut(s) 135, 279, 318, 511, 618, 687
SseBI AGGCCT 1 cut(s) 78
SsiI CCGC 5 cut(s) 46, 57, 177, 582, 663
SspMI CTAG 1 cut(s) 498
StuI AGGCCT 1 cut(s) 78
StyI CCWWGG 1 cut(s) 713
TaaI ACNGT 1 cut(s) 571
TaqI TCGA 1 cut(s) 657
TasI AATT 6 cut(s) 135, 279, 318, 511, 618, 687
TatI WGTACW 2 cut(s) 667, 760
TauI GCSGC 3 cut(s) 48, 584, 665
TfiI GAWTC 1 cut(s) 365
Tru1I TTAA 4 cut(s) 62, 134, 248, 782
Tru9I TTAA 4 cut(s) 62, 134, 248, 782
TscAI CASTG 1 cut(s) 265
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 7 cut(s) 66, 174, 254, 398, 545, 751, 776
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 2 cut(s) 112, 201
TspRI CASTG 1 cut(s) 265
VneI GTGCAC 1 cut(s) 609
XapI RAATTY 1 cut(s) 618
XceI RCATGY 2 cut(s) 29, 310
XcmI CCANNNNNNNNNTGG 1 cut(s) 265
XspI CTAG 1 cut(s) 498
ZrmI AGTACT 1 cut(s) 762
Zsp2I ATGCAT 1 cut(s) 679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.