FvH4_4g24550

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0017288
Physical Location & Seq
Reverse (-)
26656425 .. 26657809
1385 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g24550.t1

Sequence Viewer

Length: 1314 bp
ATGGAAGTTGAAATAGTATCCAGAGAAACCATCAAACCTTCCACCCCAACCTTGCCACATTACAGAACATACAACCTTTCTTTTCTTGAACAGTTGAATCCTCGTACTTACACACCAATTGTTTACTTCTACCCCAAGGAAGCATCTGCTTCTGACCATTATCCTAATTTTTGTGATAAATCCGATCAGCTCAAGAAATCTCTGTCAGAAACACTAGCCATATACTACCCATTTTCCGGTAGGATCAAAGATAGAGTCTCCATCGATTGCAATGACGAAGGAGTCATTTTTATAGAAGCAAGAATCAAAGTCCAGCTGTCTCAAATTCTCGAGCAGCCGAAAGATGAGGAGCTGGACCTGTTATTCACAGACAAGTTACAGTGGAACGATGACTCCAATCTAACAGTCATCTTGGCTGTGCAAGTAAGCTTCTTCGACTGTGGTGGAATGGCAATTGGTATCTGCATGTCACATAAAGTAGCTGATACTTCCACCATGATCAACTTCATCAATGACTGGGCAGCCATGACCCGTGATCACAAAGCTGATCAATATGTGTCTCCCAAGTTTATTGCAGAAACTGTATTCCCCCGGGGTGAGATTCCACTGCCACCAGAATCTGTGATTGAGAAAGGAGACTGCATTTCCAAGAGATATGTTTTTGATGCCTCAAAAATTGCTGCCCTCAAAGCCCTGGTATGTGACAAAGTGCAAAACCCCACAAGAGTTGAAGTTGTGACTGCTTTCATCCATAGATGTGCCATATCTGCCTTGAAATCGAATTCTGGCTCCTTATCGAACCCTAATACCCTTTTGATCCAGACGGTGAATATGCGTGCTAGAATGGTTCCTCCATTGCCGAAAAGCTCAGTAGGTAGCATGGTTTGGTACTATGCAGTGTCCACAGCCGAGGAAGAGAGTGTGATAGAGTTGCATGAGCTGGTGACTCAAATGAAGGAGAGGATGGCCCAATTCTGTGGTACCTATTTGGAGAAGTTTGGTAAAGAATGGCCTTCGATCTTCTTGGAGTGTATGGAAGAGTCAAGGAAATCGTTTCATATACAGAATCTGGTTGTGTACAGATGTAGTAGCTGGTGTAGATTCCCAATTTATGAAGCAGACTTTGGCTGGGGAAAGCCAATTTGGGTCACTATTGCTAGCTGTGTGCTGAAAAATACTATCTTTCTGATTGATGCTAGGAATGGGGAAGGAATTGAAGTATATGTGAATTTGGAAAAGCAACACATGGATATGTTTGAGCGTGATCCTGAGCTTCTGGCATTTGCTTCTTTGAATCCAAGTGTGCTAATATAG

Protein Analysis

438

Amino Acids

49.78

Weight (kDa)

5.37

Isoelectric Point (pI)

34.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 1 - 425 4e-88 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017288)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24550
malus_domestica MD16G1110600.v1.1 MD16G1110700.v1.1
pyrus_communis pycom16g09390
rosa_chinensis RchiOBHm_Chr4g0431311 RchiOBHm_Chr4g0431461
rosa_laevigata RLG00000006912
rosa_multiflora Rmu_sc0007885.1_g000012
rosa_roxburghii Rroxscaffold_5G00372910
rosa_rugosa Rorug04G0250400
rosa_samantha Rh4AG306500 Rh4DG309700
rosa_wichuraiana Rw4G026600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 281
Acc65I GGTACC 1 cut(s) 980
AccB1I GGYRCC 1 cut(s) 980
AclWI GGATC 3 cut(s) 251, 811, 1259
AcsI RAATTY 3 cut(s) 324, 781, 1228
AfaI GTAC 4 cut(s) 106, 890, 982, 1079
AfiI CCNNNNNNNGG 1 cut(s) 236
AgsI TTSAA 7 cut(s) 11, 89, 97, 731, 775, 1217, 1294
AjnI CCWGG 1 cut(s) 693
AjuI GAANNNNNNNTTGG 4 cut(s) 1107, 1126, 1139, 1158
AloI GAACNNNNNNTCC 2 cut(s) 377, 409
Alw26I GTCTC 4 cut(s) 262, 324, 564, 630
AlwI GGATC 3 cut(s) 251, 811, 1259
AlwNI CAGNNNCTG 3 cut(s) 581, 620, 1069
Ama87I CYCGRG 2 cut(s) 329, 591
AoxI GGCC 2 cut(s) 966, 1010
ApeKI GCWGC 3 cut(s) 334, 521, 680
ApoI RAATTY 3 cut(s) 324, 781, 1228
ArsI GACNNNNNNTTYG 2 cut(s) 240, 272
Asp718I GGTACC 1 cut(s) 980
AspS9I GGNCC 2 cut(s) 355, 967
AsuC2I CCSGG 2 cut(s) 592, 593
AsuHPI GGTGA 3 cut(s) 608, 838, 955
AsuNHI GCTAGC 1 cut(s) 1157
AvaI CYCGRG 2 cut(s) 329, 591
AvaII GGWCC 1 cut(s) 355
BanI GGYRCC 1 cut(s) 980
BbvI GCAGC 3 cut(s) 346, 533, 667
BccI CCATC 3 cut(s) 38, 269, 958
BciT130I CCWGG 1 cut(s) 695
BciVI GTATCC 1 cut(s) 28
BclI TGATCA 3 cut(s) 498, 535, 547
BcnI CCSGG 2 cut(s) 592, 593
BcoDI GTCTC 4 cut(s) 262, 324, 564, 630
BfaI CTAG 4 cut(s) 215, 840, 1158, 1197
BfuI GTATCC 1 cut(s) 28
BisI GCNGC 3 cut(s) 335, 522, 681
BlsI GCNGC 3 cut(s) 336, 523, 682
Bme1390I CCNGG 3 cut(s) 592, 593, 695
Bme18I GGWCC 1 cut(s) 355
BmeT110I CYCGRG 2 cut(s) 329, 591
BmgT120I GGNCC 2 cut(s) 355, 967
BmiI GGNNCC 3 cut(s) 790, 849, 982
BmrFI CCNGG 3 cut(s) 592, 593, 695
BmrI ACTGGG 1 cut(s) 526
BmsI GCATC 3 cut(s) 152, 655, 1183
BmtI GCTAGC 1 cut(s) 1161
BmuI ACTGGG 1 cut(s) 526
Bpu10I CCTNAGC 1 cut(s) 1269
BpuEI CTTGAG 1 cut(s) 176
BpuMI CCSGG 2 cut(s) 592, 593
Bsa29I ATCGAT 1 cut(s) 264
BsaJI CCNNGG 6 cut(s) 135, 590, 591, 592, 693, 909
BsaWI WCCGGW 1 cut(s) 236
BsaXI ACNNNNNCTCC 2 cut(s) 377, 407
Bsc4I CCNNNNNNNGG 1 cut(s) 236
Bse1I ACTGG 1 cut(s) 521
Bse3DI GCAATG 2 cut(s) 277, 854
BseBI CCWGG 1 cut(s) 695
BseCI ATCGAT 1 cut(s) 264
BseDI CCNNGG 6 cut(s) 135, 590, 591, 592, 693, 909
BseGI GGATG 2 cut(s) 747, 969
BseLI CCNNNNNNNGG 1 cut(s) 236
BseMI GCAATG 2 cut(s) 277, 854
BseMII CTCAG 2 cut(s) 882, 1260
BseNI ACTGG 1 cut(s) 521
BseRI GAGGAG 1 cut(s) 362
BseXI GCAGC 3 cut(s) 346, 533, 667
BseYI CCCAGC 1 cut(s) 1128
BshFI GGCC 2 cut(s) 968, 1012
BshNI GGYRCC 1 cut(s) 980
BshVI ATCGAT 1 cut(s) 264
BsiHKCI CYCGRG 2 cut(s) 329, 591
BsiSI CCGG 2 cut(s) 237, 592
BslI CCNNNNNNNGG 1 cut(s) 236
BsmAI GTCTC 4 cut(s) 262, 324, 564, 630
BsnI GGCC 2 cut(s) 968, 1012
BsoBI CYCGRG 2 cut(s) 329, 591
Bsp1407I TGTACA 1 cut(s) 1077
Bsp143I GATC 8 cut(s) 184, 243, 498, 535, 547, 816, 1017, 1264
BspANI GGCC 2 cut(s) 968, 1012
BspCNI CTCAG 2 cut(s) 881, 1261
BspDI ATCGAT 1 cut(s) 264
BspLI GGNNCC 3 cut(s) 790, 849, 982
BspOI GCTAGC 1 cut(s) 1161
BspPI GGATC 3 cut(s) 251, 811, 1259
BspT107I GGYRCC 1 cut(s) 980
BsrDI GCAATG 2 cut(s) 277, 854
BsrGI TGTACA 1 cut(s) 1077
BsrI ACTGG 1 cut(s) 521
BssECI CCNNGG 6 cut(s) 135, 590, 591, 592, 693, 909
BssMI GATC 8 cut(s) 184, 243, 498, 535, 547, 816, 1017, 1264
BssT1I CCWWGG 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 695
Bst4CI ACNGT 6 cut(s) 93, 381, 406, 440, 583, 826
Bst6I CTCTTC 2 cut(s) 909, 1032
BstAUI TGTACA 1 cut(s) 1077
BstC8I GCNNGC 2 cut(s) 837, 1159
BstDEI CTNAG 2 cut(s) 868, 1269
BstF5I GGATG 2 cut(s) 747, 969
BstKTI GATC 8 cut(s) 187, 246, 501, 538, 550, 819, 1020, 1267
BstMAI GTCTC 4 cut(s) 262, 324, 564, 630
BstMBI GATC 8 cut(s) 184, 243, 498, 535, 547, 816, 1017, 1264
BstMWI GCNNNNNNNGC 2 cut(s) 689, 767
BstNI CCWGG 1 cut(s) 695
BstNSI RCATGY 1 cut(s) 469
BstSCI CCNGG 3 cut(s) 590, 591, 693
BstV1I GCAGC 3 cut(s) 346, 533, 667
BstXI CCANNNNNNTGG 1 cut(s) 977
Bsu15I ATCGAT 1 cut(s) 264
BsuI GTATCC 1 cut(s) 28
BsuRI GGCC 2 cut(s) 968, 1012
BsuTUI ATCGAT 1 cut(s) 264
BtsCI GGATG 2 cut(s) 747, 969
BtsI GCAGTG 2 cut(s) 605, 903
BtsIMutI CAGTG 3 cut(s) 386, 605, 903
Cac8I GCNNGC 2 cut(s) 837, 1159
CaiI CAGNNNCTG 3 cut(s) 581, 620, 1069
Cfr13I GGNCC 2 cut(s) 355, 967
Cfr9I CCCGGG 1 cut(s) 591
ClaI ATCGAT 1 cut(s) 264
Csp6I GTAC 4 cut(s) 105, 889, 981, 1078
CspCI CAANNNNNGTGG 2 cut(s) 709, 744
CviAII CATG 6 cut(s) 466, 496, 526, 880, 935, 1246
CviQI GTAC 4 cut(s) 105, 889, 981, 1078
DdeI CTNAG 2 cut(s) 868, 1269
DpnI GATC 8 cut(s) 186, 245, 500, 537, 549, 818, 1019, 1266
DpnII GATC 8 cut(s) 184, 243, 498, 535, 547, 816, 1017, 1264
DrdI GACNNNNNNGTC 1 cut(s) 281
DseDI GACNNNNNNGTC 1 cut(s) 281
Eam1104I CTCTTC 2 cut(s) 909, 1032
EarI CTCTTC 2 cut(s) 909, 1032
Eco130I CCWWGG 1 cut(s) 135
Eco47I GGWCC 1 cut(s) 355
Eco88I CYCGRG 2 cut(s) 329, 591
EcoRI GAATTC 1 cut(s) 781
EcoRII CCWGG 1 cut(s) 693
EcoT14I CCWWGG 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 135
FaeI CATG 6 cut(s) 469, 499, 529, 883, 938, 1249
FatI CATG 6 cut(s) 465, 495, 525, 879, 934, 1245
FbaI TGATCA 3 cut(s) 498, 535, 547
Fnu4HI GCNGC 3 cut(s) 335, 522, 681
FokI GGATG 2 cut(s) 734, 976
Fsp4HI GCNGC 3 cut(s) 335, 522, 681
FspBI CTAG 4 cut(s) 215, 840, 1158, 1197
GluI GCNGC 3 cut(s) 335, 522, 681
GsaI CCCAGC 1 cut(s) 1132
HaeIII GGCC 2 cut(s) 968, 1012
HapII CCGG 2 cut(s) 237, 592
Hin1II CATG 6 cut(s) 469, 499, 529, 883, 938, 1249
HindIII AAGCTT 1 cut(s) 427
HpaII CCGG 2 cut(s) 237, 592
HphI GGTGA 3 cut(s) 608, 838, 955
Hpy166II GTNNAC 3 cut(s) 124, 903, 1078
Hpy188I TCNGA 4 cut(s) 154, 184, 208, 1188
Hpy188III TCNNGA 6 cut(s) 21, 86, 193, 329, 820, 1268
Hpy8I GTNNAC 3 cut(s) 124, 903, 1078
HpyAV CCTTC 5 cut(s) 48, 272, 949, 1023, 1202
HpyCH4III ACNGT 6 cut(s) 93, 381, 406, 440, 583, 826
HpyCH4V TGCA 8 cut(s) 270, 421, 465, 575, 642, 712, 896, 934
HpyF10VI GCNNNNNNNGC 2 cut(s) 689, 767
HpyF3I CTNAG 2 cut(s) 868, 1269
Hsp92II CATG 6 cut(s) 469, 499, 529, 883, 938, 1249
KpnI GGTACC 1 cut(s) 984
Ksp22I TGATCA 3 cut(s) 498, 535, 547
Kzo9I GATC 8 cut(s) 184, 243, 498, 535, 547, 816, 1017, 1264
LmnI GCTCC 2 cut(s) 349, 794
Lsp1109I GCAGC 3 cut(s) 346, 533, 667
LweI GCATC 3 cut(s) 152, 655, 1183
MaeI CTAG 4 cut(s) 215, 840, 1158, 1197
MaeIII GTNAC 6 cut(s) 375, 468, 701, 736, 943, 1147
MalI GATC 8 cut(s) 186, 245, 500, 537, 549, 818, 1019, 1266
MboI GATC 8 cut(s) 184, 243, 498, 535, 547, 816, 1017, 1264
MboII GAAGA 4 cut(s) 424, 926, 1012, 1049
MfeI CAATTG 2 cut(s) 117, 453
MlyI GAGTC 5 cut(s) 264, 291, 386, 940, 1049
MnlI CCTC 7 cut(s) 111, 340, 679, 695, 861, 904, 954
MslI CAYNNNNRTG 2 cut(s) 756, 1250
MspA1I CMGCKG 1 cut(s) 316
MspI CCGG 2 cut(s) 237, 592
MspR9I CCNGG 3 cut(s) 592, 593, 695
MunI CAATTG 2 cut(s) 117, 453
MvaI CCWGG 1 cut(s) 695
MwoI GCNNNNNNNGC 2 cut(s) 689, 767
NciI CCSGG 2 cut(s) 592, 593
NdeII GATC 8 cut(s) 184, 243, 498, 535, 547, 816, 1017, 1264
NheI GCTAGC 1 cut(s) 1157
NlaIII CATG 6 cut(s) 469, 499, 529, 883, 938, 1249
NlaIV GGNNCC 3 cut(s) 790, 849, 982
NmeAIII GCCGAG 1 cut(s) 934
NmuCI GTSAC 5 cut(s) 468, 701, 736, 943, 1147
NspI RCATGY 1 cut(s) 469
PaeR7I CTCGAG 1 cut(s) 329
PfeI GAWTC 7 cut(s) 97, 303, 601, 617, 1066, 1101, 1294
PkrI GCNGC 3 cut(s) 336, 523, 682
PleI GAGTC 5 cut(s) 263, 290, 386, 940, 1048
PpsI GAGTC 5 cut(s) 263, 290, 386, 940, 1048
Psp6I CCWGG 1 cut(s) 693
PspFI CCCAGC 1 cut(s) 1128
PspGI CCWGG 1 cut(s) 693
PspN4I GGNNCC 3 cut(s) 790, 849, 982
PspPI GGNCC 2 cut(s) 355, 967
PstNI CAGNNNCTG 3 cut(s) 581, 620, 1069
PvuII CAGCTG 1 cut(s) 316
RsaI GTAC 4 cut(s) 106, 890, 982, 1079
RsaNI GTAC 4 cut(s) 105, 889, 981, 1078
RseI CAYNNNNRTG 2 cut(s) 756, 1250
SatI GCNGC 3 cut(s) 335, 522, 681
Sau3AI GATC 8 cut(s) 184, 243, 498, 535, 547, 816, 1017, 1264
Sau96I GGNCC 2 cut(s) 355, 967
SchI GAGTC 5 cut(s) 264, 291, 386, 940, 1049
ScrFI CCNGG 3 cut(s) 592, 593, 695
SfaNI GCATC 3 cut(s) 152, 655, 1183
Sfr274I CTCGAG 1 cut(s) 329
SinI GGWCC 1 cut(s) 355
SlaI CTCGAG 1 cut(s) 329
SmaI CCCGGG 1 cut(s) 593
SmiMI CAYNNNNRTG 2 cut(s) 756, 1250
SmlI CTYRAG 2 cut(s) 191, 329
SmoI CTYRAG 2 cut(s) 191, 329
SspMI CTAG 4 cut(s) 215, 840, 1158, 1197
StyD4I CCNGG 3 cut(s) 590, 591, 693
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 6 cut(s) 93, 381, 406, 440, 583, 826
TaqI TCGA 6 cut(s) 264, 330, 435, 779, 797, 1016
TatI WGTACW 1 cut(s) 1077
TfiI GAWTC 7 cut(s) 97, 303, 601, 617, 1066, 1101, 1294
TscAI CASTG 3 cut(s) 386, 612, 903
TseFI GTSAC 5 cut(s) 468, 701, 736, 943, 1147
TseI GCWGC 3 cut(s) 334, 521, 680
Tsp45I GTSAC 5 cut(s) 468, 701, 736, 943, 1147
TspDTI ATGAA 5 cut(s) 496, 736, 968, 1046, 1128
TspMI CCCGGG 1 cut(s) 591
TspRI CASTG 3 cut(s) 386, 612, 903
VpaK11BI GGWCC 1 cut(s) 355
XapI RAATTY 3 cut(s) 324, 781, 1228
XceI RCATGY 1 cut(s) 469
XhoI CTCGAG 1 cut(s) 329
XmaI CCCGGG 1 cut(s) 591
XspI CTAG 4 cut(s) 215, 840, 1158, 1197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.