RchiOBHm_Chr4g0431311

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0017288
Physical Location & Seq
Reverse (-)
55585180 .. 55586121
942 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40000

Sequence Viewer

Length: 942 bp
ATGACGTACTCCAATTTAACTGTCATCTTGGCTGTTCAAGTAAGCTTCTTCGACTGTGGTGGAATGGCAATTGCTATCTGTATGTCACACAAAGTAGCTGACACTTCCACCCTGATCAACTTCATCAACGACTGGGCAGCCATAACCCGTGATCACAAAGCTGATCAATATGTGTCTCCTGAGTTTATTGCAGCAACTGTATTCCCCCAAGCTGAGATTCCACTGCTACCGCAATCTGTGATTGAGAAAGGGGATTATGTTTCCAAGAGATTCGTGTTTGCTGCCCCGAAAGTTGCTGCCCTCAAAGCCATGGTGTGTGACAAAGTGCAAAACCCCTCAAAAGTTGAAGTTGTGACTGCTTTTATTCATAAATGTGCCATATCTGCATTGAAATCCAATTCTGGGTCCTTGTTGAATCCTAGTACCCTTTTGATCCAAACGGTGAATTTGCGTGGTAGAATGGTTCCTCCATTGCCGAAAAGCTCAGTAGGTAGCATGGTTTGGTTCTATGCAGTGCCCACAGCGGAGGATGAGAGTGTGATAGAGTTGCATGACCTGGTGACTCAAATGAAGGAGAGGATGGCCCATTTCTGTGTTACATATGCCGAGAAATTTGGAAAAGAATGGCCTTTGATATTTATGGAGTGTATGAAAGATTCAAGGAAACTGTTTCAAAAACAAAACCTGGTTGTGTATAGATGTAGCAGTTGGTGTAGAATCCCAGTTTATGAAGCAGAATTTGGTTGGGGAAAGCCAATTTGGGTCACTATTGCTAGCTGTGTGATGAAAAATAGTATCTTTCTGATTGATACTAGGAATGGAGAAGGGATTGAAGCATATGTGAATTTGGAAAAGCAACACATGGATGTGTTTGAGCGGGATGCAGAGCTTCTTGCATTTGCTTCTCTGAATCCAAGTGCTAATATAGACTACAATACGTGA

Protein Analysis

313

Amino Acids

35.08

Weight (kDa)

6.32

Isoelectric Point (pI)

35.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 9 - 297 5.3e-51 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017288)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24550
malus_domestica MD16G1110600.v1.1 MD16G1110700.v1.1
pyrus_communis pycom16g09390
rosa_chinensis RchiOBHm_Chr4g0431311 RchiOBHm_Chr4g0431461
rosa_laevigata RLG00000006912
rosa_multiflora Rmu_sc0007885.1_g000012
rosa_roxburghii Rroxscaffold_5G00372910
rosa_rugosa Rorug04G0250400
rosa_samantha Rh4AG306500 Rh4DG309700
rosa_wichuraiana Rw4G026600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 877
AciI CCGC 3 cut(s) 230, 524, 877
AclWI GGATC 1 cut(s) 427
AcsI RAATTY 4 cut(s) 445, 611, 737, 844
AfaI GTAC 2 cut(s) 8, 424
AfiI CCNNNNNNNGG 1 cut(s) 402
AgsI TTSAA 7 cut(s) 38, 347, 391, 415, 660, 674, 833
AjnI CCWGG 2 cut(s) 555, 684
AjuI GAANNNNNNNTTGG 6 cut(s) 201, 233, 723, 742, 755, 774
AluBI AGCT 7 cut(s) 45, 98, 161, 212, 483, 777, 889
AluI AGCT 7 cut(s) 45, 98, 161, 212, 483, 777, 889
Alw26I GTCTC 1 cut(s) 180
AlwI GGATC 1 cut(s) 427
AlwNI CAGNNNCTG 1 cut(s) 197
AoxI GGCC 2 cut(s) 582, 626
ApeKI GCWGC 4 cut(s) 137, 191, 281, 296
ApoI RAATTY 4 cut(s) 445, 611, 737, 844
AspS9I GGNCC 2 cut(s) 405, 583
AsuHPI GGTGA 2 cut(s) 454, 571
AsuNHI GCTAGC 1 cut(s) 773
AvaII GGWCC 1 cut(s) 405
BaeGI GKGCMC 1 cut(s) 519
BbvI GCAGC 4 cut(s) 149, 203, 268, 283
BccI CCATC 1 cut(s) 574
BciT130I CCWGG 2 cut(s) 557, 686
BclI TGATCA 3 cut(s) 114, 151, 163
BcoDI GTCTC 1 cut(s) 180
BfaI CTAG 3 cut(s) 420, 774, 813
BisI GCNGC 4 cut(s) 138, 192, 282, 297
BlsI GCNGC 4 cut(s) 139, 193, 283, 298
Bme1390I CCNGG 2 cut(s) 557, 686
Bme18I GGWCC 1 cut(s) 405
BmgT120I GGNCC 2 cut(s) 405, 583
BmiI GGNNCC 2 cut(s) 406, 465
BmrFI CCNGG 2 cut(s) 557, 686
BmrI ACTGGG 2 cut(s) 142, 716
BmsI GCATC 1 cut(s) 871
BmtI GCTAGC 1 cut(s) 777
BmuI ACTGGG 2 cut(s) 142, 716
BsaAI YACGTR 1 cut(s) 939
BsaJI CCNNGG 1 cut(s) 309
Bsc4I CCNNNNNNNGG 1 cut(s) 402
Bse1I ACTGG 2 cut(s) 137, 722
Bse3DI GCAATG 1 cut(s) 470
BseBI CCWGG 2 cut(s) 557, 686
BseDI CCNNGG 1 cut(s) 309
BseGI GGATG 4 cut(s) 535, 585, 871, 886
BseLI CCNNNNNNNGG 1 cut(s) 402
BseMI GCAATG 1 cut(s) 470
BseMII CTCAG 3 cut(s) 171, 204, 498
BseNI ACTGG 2 cut(s) 137, 722
BseSI GKGCMC 1 cut(s) 519
BseXI GCAGC 4 cut(s) 149, 203, 268, 283
BshFI GGCC 2 cut(s) 584, 628
BslI CCNNNNNNNGG 1 cut(s) 402
BsmAI GTCTC 1 cut(s) 180
BsnI GGCC 2 cut(s) 584, 628
Bsp1286I GDGCHC 1 cut(s) 519
Bsp143I GATC 4 cut(s) 114, 151, 163, 432
Bsp19I CCATGG 1 cut(s) 309
BspACI CCGC 3 cut(s) 230, 524, 877
BspANI GGCC 2 cut(s) 584, 628
BspCNI CTCAG 3 cut(s) 172, 205, 497
BspLI GGNNCC 2 cut(s) 406, 465
BspOI GCTAGC 1 cut(s) 777
BspPI GGATC 1 cut(s) 427
BsrBI CCGCTC 1 cut(s) 877
BsrDI GCAATG 1 cut(s) 470
BsrI ACTGG 2 cut(s) 137, 722
BssECI CCNNGG 1 cut(s) 309
BssMI GATC 4 cut(s) 114, 151, 163, 432
BssT1I CCWWGG 1 cut(s) 309
Bst2UI CCWGG 2 cut(s) 557, 686
Bst4CI ACNGT 5 cut(s) 22, 56, 199, 442, 669
BstBAI YACGTR 1 cut(s) 939
BstC8I GCNNGC 1 cut(s) 775
BstDEI CTNAG 3 cut(s) 180, 213, 484
BstDSI CCRYGG 1 cut(s) 309
BstF5I GGATG 4 cut(s) 535, 585, 871, 886
BstKTI GATC 4 cut(s) 117, 154, 166, 435
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 4 cut(s) 114, 151, 163, 432
BstMWI GCNNNNNNNGC 2 cut(s) 305, 383
BstNI CCWGG 2 cut(s) 557, 686
BstSCI CCNGG 2 cut(s) 555, 684
BstSLI GKGCMC 1 cut(s) 519
BstV1I GCAGC 4 cut(s) 149, 203, 268, 283
BsuRI GGCC 2 cut(s) 584, 628
BtgI CCRYGG 1 cut(s) 309
BtsCI GGATG 4 cut(s) 535, 585, 871, 886
BtsI GCAGTG 2 cut(s) 221, 519
BtsIMutI CAGTG 2 cut(s) 221, 519
Cac8I GCNNGC 1 cut(s) 775
CaiI CAGNNNCTG 1 cut(s) 197
Cfr13I GGNCC 2 cut(s) 405, 583
CsiI ACCWGGT 2 cut(s) 555, 684
Csp6I GTAC 2 cut(s) 7, 423
CviAII CATG 4 cut(s) 310, 496, 551, 862
CviQI GTAC 2 cut(s) 7, 423
DdeI CTNAG 3 cut(s) 180, 213, 484
DpnI GATC 4 cut(s) 116, 153, 165, 434
DpnII GATC 4 cut(s) 114, 151, 163, 432
Eco130I CCWWGG 1 cut(s) 309
Eco47I GGWCC 1 cut(s) 405
EcoO109I RGGNCCY 1 cut(s) 405
EcoRII CCWGG 2 cut(s) 555, 684
EcoT14I CCWWGG 1 cut(s) 309
ErhI CCWWGG 1 cut(s) 309
FaeI CATG 4 cut(s) 313, 499, 554, 865
FatI CATG 4 cut(s) 309, 495, 550, 861
FauI CCCGC 1 cut(s) 870
FauNDI CATATG 2 cut(s) 601, 838
FbaI TGATCA 3 cut(s) 114, 151, 163
Fnu4HI GCNGC 4 cut(s) 138, 192, 282, 297
FokI GGATG 4 cut(s) 542, 592, 878, 893
Fsp4HI GCNGC 4 cut(s) 138, 192, 282, 297
FspBI CTAG 3 cut(s) 420, 774, 813
GluI GCNGC 4 cut(s) 138, 192, 282, 297
HaeIII GGCC 2 cut(s) 584, 628
Hin1II CATG 4 cut(s) 313, 499, 554, 865
HindIII AAGCTT 1 cut(s) 43
HinfI GANTC 7 cut(s) 217, 270, 415, 562, 656, 717, 910
HphI GGTGA 2 cut(s) 454, 571
Hpy188I TCNGA 2 cut(s) 804, 909
Hpy188III TCNNGA 1 cut(s) 179
HpyAV CCTTC 2 cut(s) 565, 818
HpyCH4III ACNGT 5 cut(s) 22, 56, 199, 442, 669
HpyCH4IV ACGT 2 cut(s) 5, 938
HpyCH4V TGCA 7 cut(s) 191, 328, 386, 512, 550, 884, 896
HpyF10VI GCNNNNNNNGC 2 cut(s) 305, 383
HpyF3I CTNAG 3 cut(s) 180, 213, 484
HpySE526I ACGT 2 cut(s) 5, 938
Hsp92II CATG 4 cut(s) 313, 499, 554, 865
Ksp22I TGATCA 3 cut(s) 114, 151, 163
Kzo9I GATC 4 cut(s) 114, 151, 163, 432
LpnPI CCDG 9 cut(s) 118, 125, 192, 387, 542, 569, 671, 698, 735
Lsp1109I GCAGC 4 cut(s) 149, 203, 268, 283
LweI GCATC 1 cut(s) 871
MabI ACCWGGT 2 cut(s) 555, 684
MaeI CTAG 3 cut(s) 420, 774, 813
MaeII ACGT 2 cut(s) 5, 938
MaeIII GTNAC 6 cut(s) 84, 317, 352, 559, 595, 763
MalI GATC 4 cut(s) 116, 153, 165, 434
MbiI CCGCTC 1 cut(s) 877
MboI GATC 4 cut(s) 114, 151, 163, 432
MboII GAAGA 1 cut(s) 40
MfeI CAATTG 1 cut(s) 69
MhlI GDGCHC 1 cut(s) 519
MluCI AATT 8 cut(s) 13, 69, 397, 445, 611, 737, 756, 844
MlyI GAGTC 1 cut(s) 556
MnlI CCTC 5 cut(s) 311, 346, 477, 520, 570
MseI TTAA 1 cut(s) 17
MslI CAYNNNNRTG 4 cut(s) 372, 591, 864, 866
MspA1I CMGCKG 1 cut(s) 524
MspR9I CCNGG 2 cut(s) 557, 686
MunI CAATTG 1 cut(s) 69
MvaI CCWGG 2 cut(s) 557, 686
MwoI GCNNNNNNNGC 2 cut(s) 305, 383
NcoI CCATGG 1 cut(s) 309
NdeI CATATG 2 cut(s) 601, 838
NdeII GATC 4 cut(s) 114, 151, 163, 432
NheI GCTAGC 1 cut(s) 773
NlaIII CATG 4 cut(s) 313, 499, 554, 865
NlaIV GGNNCC 2 cut(s) 406, 465
NmeAIII GCCGAG 1 cut(s) 631
NmuCI GTSAC 5 cut(s) 84, 317, 352, 559, 763
PfeI GAWTC 6 cut(s) 217, 270, 415, 656, 717, 910
PkrI GCNGC 4 cut(s) 139, 193, 283, 298
PleI GAGTC 1 cut(s) 556
PpsI GAGTC 1 cut(s) 556
Ppu21I YACGTR 1 cut(s) 939
PpuMI RGGWCCY 1 cut(s) 405
Psp5II RGGWCCY 1 cut(s) 405
Psp6I CCWGG 2 cut(s) 555, 684
PspGI CCWGG 2 cut(s) 555, 684
PspN4I GGNNCC 2 cut(s) 406, 465
PspPI GGNCC 2 cut(s) 405, 583
PspPPI RGGWCCY 1 cut(s) 405
PstNI CAGNNNCTG 1 cut(s) 197
RsaI GTAC 2 cut(s) 8, 424
RsaNI GTAC 2 cut(s) 7, 423
RseI CAYNNNNRTG 4 cut(s) 372, 591, 864, 866
SaqAI TTAA 1 cut(s) 17
SatI GCNGC 4 cut(s) 138, 192, 282, 297
Sau3AI GATC 4 cut(s) 114, 151, 163, 432
Sau96I GGNCC 2 cut(s) 405, 583
SchI GAGTC 1 cut(s) 556
ScrFI CCNGG 2 cut(s) 557, 686
SduI GDGCHC 1 cut(s) 519
SexAI ACCWGGT 2 cut(s) 555, 684
SfaNI GCATC 1 cut(s) 871
SinI GGWCC 1 cut(s) 405
SmiMI CAYNNNNRTG 4 cut(s) 372, 591, 864, 866
Sse9I AATT 8 cut(s) 13, 69, 397, 445, 611, 737, 756, 844
SsiI CCGC 3 cut(s) 230, 524, 877
SspMI CTAG 3 cut(s) 420, 774, 813
StyD4I CCNGG 2 cut(s) 555, 684
StyI CCWWGG 1 cut(s) 309
TaaI ACNGT 5 cut(s) 22, 56, 199, 442, 669
TaiI ACGT 2 cut(s) 8, 941
TaqI TCGA 1 cut(s) 51
TasI AATT 8 cut(s) 13, 69, 397, 445, 611, 737, 756, 844
TfiI GAWTC 6 cut(s) 217, 270, 415, 656, 717, 910
Tru1I TTAA 1 cut(s) 17
Tru9I TTAA 1 cut(s) 17
TscAI CASTG 2 cut(s) 228, 519
TseFI GTSAC 5 cut(s) 84, 317, 352, 559, 763
TseI GCWGC 4 cut(s) 137, 191, 281, 296
Tsp45I GTSAC 5 cut(s) 84, 317, 352, 559, 763
TspDTI ATGAA 6 cut(s) 112, 356, 584, 665, 744, 800
TspRI CASTG 2 cut(s) 228, 519
VpaK11BI GGWCC 1 cut(s) 405
XapI RAATTY 4 cut(s) 445, 611, 737, 844
XspI CTAG 3 cut(s) 420, 774, 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.