Rh4DG309700

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0017288
Physical Location & Seq
Reverse (-)
53186145 .. 53187023
879 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG309700.1

Sequence Viewer

Length: 879 bp
ATGGCAATTGGCATCTGTATGTCACACAAAGTAGCTGACACTTGCACCATGATCAACTTCATCAATGACTGGGCAGCCATAACCTGTGATCACAAAGCTGATCAATATGTGTCTCCCGAGTTTATTGCAGCAACTGTATTCCCCCAAGGTGAGATTCCACTGCTACCGCAATCTGTGATTGAGAAAGGGGATTACGTTTCCAAGAGATTTGTGTTTGCTGCCCCGAAAGTTGCTGCCCTCAAAGCCATGGTGTGTGACAAAGTGCAAAACCCCTCAAAAGTTGAAGTTGTGACTGCTTTTATTCATAGATGTGCCATATCTGCATTGAAATTGAATTCTGGGTCCTTGTTGAATCCTAGTACCCTTTTGATCCAGACGGTGAATTTGCGTGGTAGAATGGTTCCTCCATTGCCGAAAAGCTCAGTAGGTAGCATGGTTTGGTTCTATGCAGTGCCCACAGCGGAGGATGAGAGTGTGATAGAGTTGCATGACCTGGTGTCTCAAATGAAGGAGAGGATGGCCCATTTCTGTGTTACATATGCCGAGAAATTTGGAAAAGAATGGCCTTTGATATTTATGGAGTGCATGAAAGATTCAAGGAAACTGTTTCAAAAACAGAACCTGGTTGTGTATAGATGTAGCAGTTGGTGCAGATTCCCAGTTTACGAAGCAGACTTTGGTTGGGGCAAGCCAATTTGGGTCACTATTGCTAGCTGTGTGATGAAAAATAGTATCTTTCTGATTGATACTAGGAATGGAGAAGGGATTGAAGCACATGTGAATTTGGAAAAGCAACACATGGATGTGTTTGCGCGTGATGCAGAGCTTCTTGCATTTGCTTCTCTGAATCCCAGTGCTAATATAGACTACAACATGTGA

Protein Analysis

292

Amino Acids

32.79

Weight (kDa)

6.65

Isoelectric Point (pI)

38.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 1 - 276 6e-43 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017288)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24550
malus_domestica MD16G1110600.v1.1 MD16G1110700.v1.1
pyrus_communis pycom16g09390
rosa_chinensis RchiOBHm_Chr4g0431311 RchiOBHm_Chr4g0431461
rosa_laevigata RLG00000006912
rosa_multiflora Rmu_sc0007885.1_g000012
rosa_roxburghii Rroxscaffold_5G00372910
rosa_rugosa Rorug04G0250400
rosa_samantha Rh4AG306500 Rh4DG309700
rosa_wichuraiana Rw4G026600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 814
AciI CCGC 2 cut(s) 167, 461
AclWI GGATC 1 cut(s) 364
AcsI RAATTY 4 cut(s) 334, 382, 548, 781
AfaI GTAC 1 cut(s) 361
AflIII ACRYGT 2 cut(s) 775, 873
AgsI TTSAA 7 cut(s) 284, 328, 334, 352, 597, 611, 770
AhdI GACNNNNNGTC 1 cut(s) 496
AjnI CCWGG 2 cut(s) 492, 621
AjuI GAANNNNNNNTTGG 4 cut(s) 138, 170, 660, 692
AluBI AGCT 5 cut(s) 35, 98, 420, 714, 826
AluI AGCT 5 cut(s) 35, 98, 420, 714, 826
Alw26I GTCTC 2 cut(s) 117, 504
AlwI GGATC 1 cut(s) 364
AlwNI CAGNNNCTG 2 cut(s) 134, 622
Ama87I CYCGRG 1 cut(s) 116
AoxI GGCC 2 cut(s) 519, 563
ApeKI GCWGC 4 cut(s) 74, 128, 218, 233
ApoI RAATTY 4 cut(s) 334, 382, 548, 781
ArsI GACNNNNNNTTYG 2 cut(s) 367, 399
AspLEI GCGC 1 cut(s) 814
AspS9I GGNCC 2 cut(s) 342, 520
AsuHPI GGTGA 2 cut(s) 161, 391
AsuNHI GCTAGC 1 cut(s) 710
AvaI CYCGRG 1 cut(s) 116
AvaII GGWCC 1 cut(s) 342
BaeGI GKGCMC 1 cut(s) 456
BbvI GCAGC 4 cut(s) 86, 140, 205, 220
BccI CCATC 1 cut(s) 511
BcgI CGANNNNNNTGC 2 cut(s) 107, 141
BciT130I CCWGG 2 cut(s) 494, 623
BclI TGATCA 3 cut(s) 51, 88, 100
BcoDI GTCTC 2 cut(s) 117, 504
BfaI CTAG 3 cut(s) 357, 711, 750
BisI GCNGC 4 cut(s) 75, 129, 219, 234
BlsI GCNGC 4 cut(s) 76, 130, 220, 235
Bme1390I CCNGG 2 cut(s) 494, 623
Bme18I GGWCC 1 cut(s) 342
BmeRI GACNNNNNGTC 1 cut(s) 496
BmeT110I CYCGRG 1 cut(s) 116
BmgT120I GGNCC 2 cut(s) 342, 520
BmiI GGNNCC 2 cut(s) 343, 402
BmrFI CCNGG 2 cut(s) 494, 623
BmrI ACTGGG 3 cut(s) 79, 653, 846
BmsI GCATC 2 cut(s) 21, 808
BmtI GCTAGC 1 cut(s) 714
BmuI ACTGGG 3 cut(s) 79, 653, 846
BsaJI CCNNGG 2 cut(s) 145, 246
Bse1I ACTGG 3 cut(s) 74, 659, 852
Bse3DI GCAATG 1 cut(s) 407
BseBI CCWGG 2 cut(s) 494, 623
BseDI CCNNGG 2 cut(s) 145, 246
BseGI GGATG 3 cut(s) 472, 522, 808
BseMI GCAATG 1 cut(s) 407
BseMII CTCAG 1 cut(s) 435
BseNI ACTGG 3 cut(s) 74, 659, 852
BseSI GKGCMC 1 cut(s) 456
BseXI GCAGC 4 cut(s) 86, 140, 205, 220
BsgI GTGCAG 1 cut(s) 670
Bsh1236I CGCG 1 cut(s) 814
BshFI GGCC 2 cut(s) 521, 565
BsiHKCI CYCGRG 1 cut(s) 116
BsmAI GTCTC 2 cut(s) 117, 504
BsnI GGCC 2 cut(s) 521, 565
BsoBI CYCGRG 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 456
Bsp143I GATC 4 cut(s) 51, 88, 100, 369
Bsp19I CCATGG 1 cut(s) 246
BspACI CCGC 2 cut(s) 167, 461
BspANI GGCC 2 cut(s) 521, 565
BspCNI CTCAG 1 cut(s) 434
BspFNI CGCG 1 cut(s) 814
BspLI GGNNCC 2 cut(s) 343, 402
BspOI GCTAGC 1 cut(s) 714
BspPI GGATC 1 cut(s) 364
BsrDI GCAATG 1 cut(s) 407
BsrI ACTGG 3 cut(s) 74, 659, 852
BssECI CCNNGG 2 cut(s) 145, 246
BssMI GATC 4 cut(s) 51, 88, 100, 369
BssT1I CCWWGG 2 cut(s) 145, 246
Bst2UI CCWGG 2 cut(s) 494, 623
Bst4CI ACNGT 3 cut(s) 136, 379, 606
BstAPI GCANNNNNTGC 1 cut(s) 648
BstC8I GCNNGC 2 cut(s) 689, 712
BstDEI CTNAG 1 cut(s) 421
BstDSI CCRYGG 1 cut(s) 246
BstF5I GGATG 3 cut(s) 472, 522, 808
BstFNI CGCG 1 cut(s) 814
BstHHI GCGC 1 cut(s) 814
BstKTI GATC 4 cut(s) 54, 91, 103, 372
BstMAI GTCTC 2 cut(s) 117, 504
BstMBI GATC 4 cut(s) 51, 88, 100, 369
BstMWI GCNNNNNNNGC 4 cut(s) 242, 320, 648, 818
BstNI CCWGG 2 cut(s) 494, 623
BstNSI RCATGY 2 cut(s) 779, 877
BstSCI CCNGG 2 cut(s) 492, 621
BstSLI GKGCMC 1 cut(s) 456
BstUI CGCG 1 cut(s) 814
BstV1I GCAGC 4 cut(s) 86, 140, 205, 220
BsuRI GGCC 2 cut(s) 521, 565
BtgI CCRYGG 1 cut(s) 246
BtsCI GGATG 3 cut(s) 472, 522, 808
BtsI GCAGTG 2 cut(s) 158, 456
BtsIMutI CAGTG 3 cut(s) 158, 456, 859
Cac8I GCNNGC 2 cut(s) 689, 712
CaiI CAGNNNCTG 2 cut(s) 134, 622
CfoI GCGC 1 cut(s) 814
Cfr13I GGNCC 2 cut(s) 342, 520
CsiI ACCWGGT 2 cut(s) 492, 621
Csp6I GTAC 1 cut(s) 360
CviAII CATG 8 cut(s) 49, 247, 433, 488, 586, 776, 799, 874
CviQI GTAC 1 cut(s) 360
DdeI CTNAG 1 cut(s) 421
DpnI GATC 4 cut(s) 53, 90, 102, 371
DpnII GATC 4 cut(s) 51, 88, 100, 369
DriI GACNNNNNGTC 1 cut(s) 496
Eam1105I GACNNNNNGTC 1 cut(s) 496
Eco130I CCWWGG 2 cut(s) 145, 246
Eco47I GGWCC 1 cut(s) 342
Eco88I CYCGRG 1 cut(s) 116
EcoO109I RGGNCCY 1 cut(s) 342
EcoRI GAATTC 1 cut(s) 334
EcoRII CCWGG 2 cut(s) 492, 621
EcoT14I CCWWGG 2 cut(s) 145, 246
ErhI CCWWGG 2 cut(s) 145, 246
FaeI CATG 8 cut(s) 52, 250, 436, 491, 589, 779, 802, 877
FatI CATG 8 cut(s) 48, 246, 432, 487, 585, 775, 798, 873
FauNDI CATATG 1 cut(s) 538
FbaI TGATCA 3 cut(s) 51, 88, 100
Fnu4HI GCNGC 4 cut(s) 75, 129, 219, 234
FokI GGATG 3 cut(s) 479, 529, 815
Fsp4HI GCNGC 4 cut(s) 75, 129, 219, 234
FspBI CTAG 3 cut(s) 357, 711, 750
GlaI GCGC 1 cut(s) 813
GluI GCNGC 4 cut(s) 75, 129, 219, 234
HaeIII GGCC 2 cut(s) 521, 565
HhaI GCGC 1 cut(s) 814
Hin1II CATG 8 cut(s) 52, 250, 436, 491, 589, 779, 802, 877
Hin6I GCGC 1 cut(s) 812
HinP1I GCGC 1 cut(s) 812
HinfI GANTC 5 cut(s) 154, 352, 593, 654, 847
HphI GGTGA 2 cut(s) 161, 391
Hpy166II GTNNAC 1 cut(s) 664
Hpy188I TCNGA 2 cut(s) 741, 846
Hpy188III TCNNGA 2 cut(s) 116, 373
Hpy8I GTNNAC 1 cut(s) 664
HpyAV CCTTC 2 cut(s) 502, 755
HpyCH4III ACNGT 3 cut(s) 136, 379, 606
HpyCH4IV ACGT 1 cut(s) 195
HpyF10VI GCNNNNNNNGC 4 cut(s) 242, 320, 648, 818
HpyF3I CTNAG 1 cut(s) 421
HpySE526I ACGT 1 cut(s) 195
Hsp92II CATG 8 cut(s) 52, 250, 436, 491, 589, 779, 802, 877
HspAI GCGC 1 cut(s) 812
Ksp22I TGATCA 3 cut(s) 51, 88, 100
Kzo9I GATC 4 cut(s) 51, 88, 100, 369
Lsp1109I GCAGC 4 cut(s) 86, 140, 205, 220
LweI GCATC 2 cut(s) 21, 808
MabI ACCWGGT 2 cut(s) 492, 621
MaeI CTAG 3 cut(s) 357, 711, 750
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 5 cut(s) 21, 254, 289, 532, 700
MalI GATC 4 cut(s) 53, 90, 102, 371
MboI GATC 4 cut(s) 51, 88, 100, 369
MfeI CAATTG 1 cut(s) 6
MhlI GDGCHC 1 cut(s) 456
MluCI AATT 7 cut(s) 6, 329, 334, 382, 548, 693, 781
MnlI CCTC 5 cut(s) 248, 283, 414, 457, 507
MslI CAYNNNNRTG 5 cut(s) 17, 309, 528, 801, 803
MspA1I CMGCKG 1 cut(s) 461
MspR9I CCNGG 2 cut(s) 494, 623
MunI CAATTG 1 cut(s) 6
MvaI CCWGG 2 cut(s) 494, 623
MvnI CGCG 1 cut(s) 814
MwoI GCNNNNNNNGC 4 cut(s) 242, 320, 648, 818
NcoI CCATGG 1 cut(s) 246
NdeI CATATG 1 cut(s) 538
NdeII GATC 4 cut(s) 51, 88, 100, 369
NheI GCTAGC 1 cut(s) 710
NlaIII CATG 8 cut(s) 52, 250, 436, 491, 589, 779, 802, 877
NlaIV GGNNCC 2 cut(s) 343, 402
NmeAIII GCCGAG 1 cut(s) 568
NmuCI GTSAC 4 cut(s) 21, 254, 289, 700
NspI RCATGY 2 cut(s) 779, 877
PciI ACATGT 2 cut(s) 775, 873
PfeI GAWTC 5 cut(s) 154, 352, 593, 654, 847
PkrI GCNGC 4 cut(s) 76, 130, 220, 235
PpuMI RGGWCCY 1 cut(s) 342
PscI ACATGT 2 cut(s) 775, 873
Psp5II RGGWCCY 1 cut(s) 342
Psp6I CCWGG 2 cut(s) 492, 621
PspGI CCWGG 2 cut(s) 492, 621
PspN4I GGNNCC 2 cut(s) 343, 402
PspPI GGNCC 2 cut(s) 342, 520
PspPPI RGGWCCY 1 cut(s) 342
PstNI CAGNNNCTG 2 cut(s) 134, 622
RsaI GTAC 1 cut(s) 361
RsaNI GTAC 1 cut(s) 360
RseI CAYNNNNRTG 5 cut(s) 17, 309, 528, 801, 803
SatI GCNGC 4 cut(s) 75, 129, 219, 234
Sau3AI GATC 4 cut(s) 51, 88, 100, 369
Sau96I GGNCC 2 cut(s) 342, 520
ScrFI CCNGG 2 cut(s) 494, 623
SduI GDGCHC 1 cut(s) 456
SexAI ACCWGGT 2 cut(s) 492, 621
SfaNI GCATC 2 cut(s) 21, 808
SinI GGWCC 1 cut(s) 342
SmiMI CAYNNNNRTG 5 cut(s) 17, 309, 528, 801, 803
Sse9I AATT 7 cut(s) 6, 329, 334, 382, 548, 693, 781
SsiI CCGC 2 cut(s) 167, 461
SspMI CTAG 3 cut(s) 357, 711, 750
StyD4I CCNGG 2 cut(s) 492, 621
StyI CCWWGG 2 cut(s) 145, 246
TaaI ACNGT 3 cut(s) 136, 379, 606
TaiI ACGT 1 cut(s) 198
TasI AATT 7 cut(s) 6, 329, 334, 382, 548, 693, 781
TfiI GAWTC 5 cut(s) 154, 352, 593, 654, 847
TscAI CASTG 3 cut(s) 165, 456, 859
TseFI GTSAC 4 cut(s) 21, 254, 289, 700
TseI GCWGC 4 cut(s) 74, 128, 218, 233
Tsp45I GTSAC 4 cut(s) 21, 254, 289, 700
TspDTI ATGAA 5 cut(s) 49, 293, 521, 602, 737
TspRI CASTG 3 cut(s) 165, 456, 859
VpaK11BI GGWCC 1 cut(s) 342
XapI RAATTY 4 cut(s) 334, 382, 548, 781
XceI RCATGY 2 cut(s) 779, 877
XspI CTAG 3 cut(s) 357, 711, 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.