Rorug04G0250400

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0017288
Physical Location & Seq
Forward (+)
42254548 .. 42255018
471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0250400.1

Sequence Viewer

Length: 471 bp
ATGGGAAGTAGAGTTGATTACATTAGTGTCTTTTTGGTTATTTTTAGGATTTTCTTTGTTGGTTTTTTAGGTCTGATAATAAGTCCCTACTCACTTGAGCTAGGGTTTGGGAGTCTTGGTCTTGCTGTGCTATTTTTATGGTGTTCTACCCGGGGACTATTTGTTAAATTGTCGGTGCTTTCTGGTTATCAATGTGATGGTGAATTGCCCTTGCACGTGGTCTGGTTTTGGGACACGGTGTTGAAGAGGGTGAAGCAGTTTGTCTTGATGTTGGTGACGAGGTCGTATCGGGACACTCGGGATTGGTTATCGTTCTGTGTAGCCTGGGGTGATAGGCGTAAAAATTGGTTAGGGGTTGGACCTTTTCGGTTCATGGAAGTTACTATTAGTGACGGACCCATAACTAGGGATCTTGGTAGGAATATGTGTCGTGGTGTTGTTACCACAACCGGTTATTCCAATGCTTTGTAA

Protein Analysis

156

Amino Acids

17.81

Weight (kDa)

9.46

Isoelectric Point (pI)

17.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017288)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24550
malus_domestica MD16G1110600.v1.1 MD16G1110700.v1.1
pyrus_communis pycom16g09390
rosa_chinensis RchiOBHm_Chr4g0431311 RchiOBHm_Chr4g0431461
rosa_laevigata RLG00000006912
rosa_multiflora Rmu_sc0007885.1_g000012
rosa_roxburghii Rroxscaffold_5G00372910
rosa_rugosa Rorug04G0250400
rosa_samantha Rh4AG306500 Rh4DG309700
rosa_wichuraiana Rw4G026600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 417
AcvI CACGTG 1 cut(s) 217
AfiI CCNNNNNNNGG 1 cut(s) 405
AgeI ACCGGT 1 cut(s) 449
AgsI TTSAA 1 cut(s) 244
AjnI CCWGG 1 cut(s) 323
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
AlwI GGATC 1 cut(s) 417
Ama87I CYCGRG 2 cut(s) 150, 297
AsiGI ACCGGT 1 cut(s) 449
AspS9I GGNCC 2 cut(s) 359, 395
AsuC2I CCSGG 2 cut(s) 151, 152
AsuHPI GGTGA 4 cut(s) 212, 262, 286, 341
AvaI CYCGRG 2 cut(s) 150, 297
AvaII GGWCC 2 cut(s) 359, 395
BbrPI CACGTG 1 cut(s) 217
BccI CCATC 1 cut(s) 191
BciT130I CCWGG 1 cut(s) 325
BcnI CCSGG 2 cut(s) 151, 152
BfaI CTAG 2 cut(s) 101, 405
Bme1390I CCNGG 3 cut(s) 151, 152, 325
Bme18I GGWCC 2 cut(s) 359, 395
BmeT110I CYCGRG 2 cut(s) 150, 297
BmgT120I GGNCC 2 cut(s) 359, 395
BmiI GGNNCC 1 cut(s) 397
BmrFI CCNGG 3 cut(s) 151, 152, 325
BpuEI CTTGAG 1 cut(s) 116
BpuMI CCSGG 2 cut(s) 151, 152
BsaAI YACGTR 1 cut(s) 217
BsaJI CCNNGG 3 cut(s) 150, 151, 324
BsaWI WCCGGW 1 cut(s) 449
BsaXI ACNNNNNCTCC 2 cut(s) 103, 133
Bsc4I CCNNNNNNNGG 1 cut(s) 405
Bse118I RCCGGY 1 cut(s) 449
BseBI CCWGG 1 cut(s) 325
BseDI CCNNGG 3 cut(s) 150, 151, 324
BseLI CCNNNNNNNGG 1 cut(s) 405
BshTI ACCGGT 1 cut(s) 449
BsiHKCI CYCGRG 2 cut(s) 150, 297
BsiSI CCGG 2 cut(s) 151, 450
BslFI GGGAC 4 cut(s) 69, 168, 245, 305
BslI CCNNNNNNNGG 1 cut(s) 405
BsmFI GGGAC 4 cut(s) 69, 168, 245, 305
BsoBI CYCGRG 2 cut(s) 150, 297
Bsp143I GATC 1 cut(s) 409
BspLI GGNNCC 1 cut(s) 397
BspPI GGATC 1 cut(s) 417
BsrFI RCCGGY 1 cut(s) 449
BssAI RCCGGY 1 cut(s) 449
BssECI CCNNGG 3 cut(s) 150, 151, 324
BssMI GATC 1 cut(s) 409
Bst2UI CCWGG 1 cut(s) 325
Bst4CI ACNGT 1 cut(s) 238
Bst6I CTCTTC 1 cut(s) 239
BstBAI YACGTR 1 cut(s) 217
BstKTI GATC 1 cut(s) 412
BstMBI GATC 1 cut(s) 409
BstNI CCWGG 1 cut(s) 325
BstSCI CCNGG 3 cut(s) 149, 150, 323
BstX2I RGATCY 1 cut(s) 409
BstYI RGATCY 1 cut(s) 409
Cfr10I RCCGGY 1 cut(s) 449
Cfr13I GGNCC 2 cut(s) 359, 395
Cfr9I CCCGGG 1 cut(s) 150
CspAI ACCGGT 1 cut(s) 449
CviAII CATG 1 cut(s) 373
CviJI RGCY 2 cut(s) 100, 323
CviKI_1 RGCY 2 cut(s) 100, 323
DpnI GATC 1 cut(s) 411
DpnII GATC 1 cut(s) 409
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Eco47I GGWCC 2 cut(s) 359, 395
Eco72I CACGTG 1 cut(s) 217
Eco88I CYCGRG 2 cut(s) 150, 297
EcoRII CCWGG 1 cut(s) 323
FaeI CATG 1 cut(s) 376
FaiI YATR 4 cut(s) 139, 374, 401, 425
FaqI GGGAC 4 cut(s) 69, 168, 245, 305
FatI CATG 1 cut(s) 372
FspBI CTAG 2 cut(s) 101, 405
HapII CCGG 2 cut(s) 151, 450
Hin1II CATG 1 cut(s) 376
HinfI GANTC 1 cut(s) 112
HpaII CCGG 2 cut(s) 151, 450
HphI GGTGA 4 cut(s) 212, 262, 286, 341
Hpy188I TCNGA 1 cut(s) 75
Hpy188III TCNNGA 3 cut(s) 265, 290, 299
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 1 cut(s) 214
HpySE526I ACGT 1 cut(s) 216
Hsp92II CATG 1 cut(s) 376
Kzo9I GATC 1 cut(s) 409
LpnPI CCDG 6 cut(s) 164, 168, 208, 310, 337, 463
MaeI CTAG 2 cut(s) 101, 405
MaeII ACGT 1 cut(s) 216
MaeIII GTNAC 4 cut(s) 274, 379, 389, 439
MalI GATC 1 cut(s) 411
MboI GATC 1 cut(s) 409
MboII GAAGA 1 cut(s) 256
MflI RGATCY 1 cut(s) 409
MluCI AATT 3 cut(s) 167, 203, 343
MlyI GAGTC 1 cut(s) 121
MmeI TCCRAC 1 cut(s) 337
MnlI CCTC 2 cut(s) 240, 273
MseI TTAA 1 cut(s) 165
MspI CCGG 2 cut(s) 151, 450
MspR9I CCNGG 3 cut(s) 151, 152, 325
MvaI CCWGG 1 cut(s) 325
NciI CCSGG 2 cut(s) 151, 152
NdeII GATC 1 cut(s) 409
NlaIII CATG 1 cut(s) 376
NlaIV GGNNCC 1 cut(s) 397
NmuCI GTSAC 2 cut(s) 274, 389
PflFI GACNNNGTC 1 cut(s) 280
PinAI ACCGGT 1 cut(s) 449
PleI GAGTC 1 cut(s) 120
PmaCI CACGTG 1 cut(s) 217
PmlI CACGTG 1 cut(s) 217
PpsI GAGTC 1 cut(s) 120
Ppu21I YACGTR 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 323
PspCI CACGTG 1 cut(s) 217
PspGI CCWGG 1 cut(s) 323
PspN4I GGNNCC 1 cut(s) 397
PspPI GGNCC 2 cut(s) 359, 395
PsuI RGATCY 1 cut(s) 409
PsyI GACNNNGTC 1 cut(s) 280
SaqAI TTAA 1 cut(s) 165
Sau3AI GATC 1 cut(s) 409
Sau96I GGNCC 2 cut(s) 359, 395
SchI GAGTC 1 cut(s) 121
ScrFI CCNGG 3 cut(s) 151, 152, 325
SetI ASST 5 cut(s) 73, 102, 219, 284, 364
SinI GGWCC 2 cut(s) 359, 395
SmaI CCCGGG 1 cut(s) 152
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 3 cut(s) 167, 203, 343
SspMI CTAG 2 cut(s) 101, 405
StyD4I CCNGG 3 cut(s) 149, 150, 323
TaaI ACNGT 1 cut(s) 238
TaiI ACGT 1 cut(s) 219
TasI AATT 3 cut(s) 167, 203, 343
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TseFI GTSAC 2 cut(s) 274, 389
Tsp45I GTSAC 2 cut(s) 274, 389
TspDTI ATGAA 1 cut(s) 361
TspGWI ACGGA 1 cut(s) 408
TspMI CCCGGG 1 cut(s) 150
Tth111I GACNNNGTC 1 cut(s) 280
VpaK11BI GGWCC 2 cut(s) 359, 395
XmaI CCCGGG 1 cut(s) 150
XspI CTAG 2 cut(s) 101, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.