Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0017651

Physical Location & Seq

Genomic Coordinates Forward (+)

26737475 .. 26738780

Gene Structure 1306 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g24660.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGCGACGGTGCAGCTCGAAGTGATATCCAGAGAGTTCATCAAGCCCTCCTCCCAAACTCCAGCTCACCTAAGGAATTTCAACCTCTCTTACTTCGATCAGATCGCTGCTCGTATGTACATCCCACTTGTCTTCTTCTATAATCCTTGCAATACCACTTCCACCACTTTTGAGACATCCAATCTCCTCAAAAAATCTTTATCTGAAACCCTAACCGTGTACTACCCCTTTGCCGGAAAGATCAAAGACCGAGAATTCATCGACTGCAACGACGAGGGAGTTTTGTTCTTGGAAGCAAAGGTCAAAGTGAAGATGTCTGAAATTCTTGATGATCGGAGACATGAGAACTTGGACCTTTTGTTTGCAGACAATTTGCAGTGGAACGATGCGACAACTTCGGTCAACTTCGTCAATGACTGGGCTGCCAAGGCTTCAAACTCAGGCAAACATGTGTCCCCTTTACTCTGTGTACCCCCGATTTTTCCGAGGGGTGACATACCGCTTATGCCGGAATCTTCCCCCAATAAAGGAAAATGTTCCTCCAGAAGATTTGTATTCGATGCGCCAAAAATTGCTGCCCTCAAAGCCATAGTAGCTGACAGAGTGCAAAAGCCTACAAAGGTAGAAGTTGTGAGTGGTCTACTATATAAATGTGCAATTTCTGCAGCCAATGCAAGTTCATCAGGTGCAACAAGACCAGCCCTTCTGATCCCAAATGTCAACCTCCGAAGCAGGATGAGTCCTCCGCTGCCAGAAAACTATGTGGGTAACCTCAGTTGGGTATTTCCGGTTCTGAAGAGAGAGGACAGTTTGCATAGCTTGGTGAGTCAAATGAAAGAGGGTTTGTCAGACTTCTGCAACACATATGTCAAGAATGTTTCAAGGGGTACTGAATTGGCCTTGAGTATTAGGAAACAGATGGAGAAGGTAAAGGAAATGTACAAGAGCAGTGAGCAAGTAGTACAACACAATTGTAGTAGCTGGTGCAGGTTCCCAATATATGAAGCAGATTTTGGGTGGGGAAAGCCTGTGTGGGTGAGTATTGGTGCTTGTCTTGACAAGAATGTCATGATTCTGATGGATAGTAAAAGTGGGGATGGGATTGAAGCTATTGTGACTCTGGAAGAGCAAGACATGGCTGCTTTCGAATGTGATGAGGAGTTGCTAGCATTTGCTGCTCAAAATCCAAATCCGTTAAGTCAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0005984 GO:0005985 GO:0008150 GO:0008152 GO:0009311 GO:0009987 GO:0016740 GO:0016746 GO:0044237 GO:0044238 GO:0044262 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

403

Amino Acids

44.93

Weight (kDa)

6.27

Isoelectric Point (pI)

45.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	5 - 119	1.1e-27	Transferase family
Transferase	PF02458	129 - 388	2e-36	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017651)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24660
malus_domestica	MD14G1155800.v1.1
pyrus_communis	pycom14g12950
rosa_chinensis	RchiOBHm_Chr4g0431761
rosa_laevigata	RLG00000006892
rosa_multiflora	Rmu_sc0001459.1_g000022
rosa_roxburghii	Rroxscaffold_5G00373160
rosa_rugosa	Rorug04G0252200
rosa_samantha	Rh4AG308600 Rh4BG316400
rosa_wichuraiana	Rw4G026770 Rw4G026840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1064
Acc36I	ACCTGC	1 cut(s)	978
AccI	GTMKAC	1 cut(s)	640
AciI	CCGC	2 cut(s)	500, 746
AclWI	GGATC	1 cut(s)	703
AcsI	RAATTY	3 cut(s)	76, 254, 321
AcuI	CTGAAG	1 cut(s)	815
AfaI	GTAC	6 cut(s)	119, 221, 471, 889, 941, 963
AfiI	CCNNNNNNNGG	3 cut(s)	233, 527, 778
AflIII	ACRYGT	1 cut(s)	448
AgsI	TTSAA	4 cut(s)	82, 435, 882, 1106
AjuI	GAANNNNNNNTTGG	2 cut(s)	996, 1028
AluBI	AGCT	6 cut(s)	16, 65, 596, 819, 981, 1109
AluI	AGCT	6 cut(s)	16, 65, 596, 819, 981, 1109
Alw26I	GTCTC	2 cut(s)	167, 331
AlwI	GGATC	1 cut(s)	703
AoxI	GGCC	1 cut(s)	897
ApeKI	GCWGC	8 cut(s)	13, 107, 422, 575, 665, 748, 1139, 1175
ApoI	RAATTY	3 cut(s)	76, 254, 321
ArsI	GACNNNNNNTTYG	2 cut(s)	344, 376
Asp700I	GAANNNNTTC	1 cut(s)	535
AspLEI	GCGC	1 cut(s)	565
AspS9I	GGNCC	1 cut(s)	352
AsuHPI	GGTGA	4 cut(s)	59, 503, 835, 1048
AsuII	TTCGAA	1 cut(s)	1146
AsuNHI	GCTAGC	1 cut(s)	1165
AvaII	GGWCC	1 cut(s)	352
AxyI	CCTNAGG	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	124
BbvI	GCAGC	8 cut(s)	25, 94, 409, 562, 677, 735, 1126, 1162
BccI	CCATC	3 cut(s)	913, 1072, 1091
BcoDI	GTCTC	2 cut(s)	167, 331
BfaI	CTAG	1 cut(s)	1166
BfmI	CTRYAG	1 cut(s)	663
BfuAI	ACCTGC	1 cut(s)	978
BisI	GCNGC	8 cut(s)	14, 108, 423, 576, 666, 749, 1140, 1176
BlsI	GCNGC	8 cut(s)	15, 109, 424, 577, 667, 750, 1141, 1177
Bme18I	GGWCC	1 cut(s)	352
BmgT120I	GGNCC	1 cut(s)	352
BmiI	GGNNCC	1 cut(s)	992
BmrI	ACTGGG	1 cut(s)	427
BmsI	GCATC	2 cut(s)	376, 550
BmtI	GCTAGC	1 cut(s)	1169
BmuI	ACTGGG	1 cut(s)	427
BpiI	GAAGAC	1 cut(s)	124
BpmI	CTGGAG	2 cut(s)	45, 526
Bpu14I	TTCGAA	1 cut(s)	1146
BpuEI	CTTGAG	1 cut(s)	922
BsaJI	CCNNGG	2 cut(s)	426, 485
BsaWI	WCCGGW	1 cut(s)	787
Bsc4I	CCNNNNNNNGG	3 cut(s)	233, 527, 778
Bse1I	ACTGG	1 cut(s)	422
Bse21I	CCTNAGG	1 cut(s)	71
BseDI	CCNNGG	2 cut(s)	426, 485
BseGI	GGATG	4 cut(s)	120, 176, 741, 1102
BseLI	CCNNNNNNNGG	3 cut(s)	233, 527, 778
BseMII	CTCAG	2 cut(s)	453, 787
BseNI	ACTGG	1 cut(s)	422
BseRI	GAGGAG	3 cut(s)	40, 176, 1172
BseXI	GCAGC	8 cut(s)	25, 94, 409, 562, 677, 735, 1126, 1162
BsgI	GTGCAG	2 cut(s)	32, 1006
BshFI	GGCC	1 cut(s)	899
BsiSI	CCGG	3 cut(s)	234, 509, 788
BslFI	GGGAC	1 cut(s)	439
BslI	CCNNNNNNNGG	3 cut(s)	233, 527, 778
BsmAI	GTCTC	2 cut(s)	167, 331
BsmFI	GGGAC	1 cut(s)	439
BsnI	GGCC	1 cut(s)	899
Bsp119I	TTCGAA	1 cut(s)	1146
Bsp1407I	TGTACA	2 cut(s)	117, 939
Bsp143I	GATC	5 cut(s)	97, 102, 240, 331, 708
BspACI	CCGC	2 cut(s)	500, 746
BspANI	GGCC	1 cut(s)	899
BspCNI	CTCAG	2 cut(s)	452, 786
BspHI	TCATGA	1 cut(s)	1068
BspLI	GGNNCC	1 cut(s)	992
BspMAI	CTGCAG	1 cut(s)	667
BspMI	ACCTGC	1 cut(s)	978
BspOI	GCTAGC	1 cut(s)	1169
BspPI	GGATC	1 cut(s)	703
BspQI	GCTCTTC	1 cut(s)	1119
BspT104I	TTCGAA	1 cut(s)	1146
BsrGI	TGTACA	2 cut(s)	117, 939
BsrI	ACTGG	1 cut(s)	422
BssECI	CCNNGG	2 cut(s)	426, 485
BssMI	GATC	5 cut(s)	97, 102, 240, 331, 708
BssT1I	CCWWGG	1 cut(s)	426
Bst4CI	ACNGT	3 cut(s)	10, 217, 809
Bst6I	CTCTTC	2 cut(s)	791, 1119
BstAPI	GCANNNNNTGC	3 cut(s)	662, 671, 1175
BstAUI	TGTACA	2 cut(s)	117, 939
BstBI	TTCGAA	1 cut(s)	1146
BstC8I	GCNNGC	1 cut(s)	1167
BstDEI	CTNAG	3 cut(s)	71, 439, 773
BstEII	GGTNACC	1 cut(s)	767
BstF5I	GGATG	4 cut(s)	120, 176, 741, 1102
BstHHI	GCGC	1 cut(s)	565
BstKTI	GATC	5 cut(s)	100, 105, 243, 334, 711
BstMAI	GTCTC	2 cut(s)	167, 331
BstMBI	GATC	5 cut(s)	97, 102, 240, 331, 708
BstMWI	GCNNNNNNNGC	6 cut(s)	428, 584, 593, 662, 671, 1175
BstNSI	RCATGY	1 cut(s)	452
BstPI	GGTNACC	1 cut(s)	767
BstSFI	CTRYAG	1 cut(s)	663
BstV1I	GCAGC	8 cut(s)	25, 94, 409, 562, 677, 735, 1126, 1162
BstV2I	GAAGAC	1 cut(s)	124
Bsu36I	CCTNAGG	1 cut(s)	71
BsuRI	GGCC	1 cut(s)	899
BtsCI	GGATG	4 cut(s)	120, 176, 741, 1102
BtsI	GCAGTG	2 cut(s)	383, 955
BtsIMutI	CAGTG	2 cut(s)	383, 955
BveI	ACCTGC	1 cut(s)	978
Cac8I	GCNNGC	1 cut(s)	1167
CciI	TCATGA	1 cut(s)	1068
CfoI	GCGC	1 cut(s)	565
Cfr13I	GGNCC	1 cut(s)	352
Csp6I	GTAC	6 cut(s)	118, 220, 470, 888, 940, 962
CspCI	CAANNNNNGTGG	2 cut(s)	151, 186
CviAII	CATG	4 cut(s)	341, 449, 1069, 1135
CviQI	GTAC	6 cut(s)	118, 220, 470, 888, 940, 962
DdeI	CTNAG	3 cut(s)	71, 439, 773
DpnI	GATC	5 cut(s)	99, 104, 242, 333, 710
DpnII	GATC	5 cut(s)	97, 102, 240, 331, 708
DrdI	GACNNNNNNGTC	1 cut(s)	1064
DseDI	GACNNNNNNGTC	1 cut(s)	1064
Eam1104I	CTCTTC	2 cut(s)	791, 1119
EarI	CTCTTC	2 cut(s)	791, 1119
Eco130I	CCWWGG	1 cut(s)	426
Eco32I	GATATC	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	815
Eco81I	CCTNAGG	1 cut(s)	71
Eco91I	GGTNACC	1 cut(s)	767
EcoO65I	GGTNACC	1 cut(s)	767
EcoRI	GAATTC	1 cut(s)	254
EcoRV	GATATC	1 cut(s)	27
EcoT14I	CCWWGG	1 cut(s)	426
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	4 cut(s)	344, 452, 1072, 1138
FaqI	GGGAC	1 cut(s)	439
FatI	CATG	4 cut(s)	340, 448, 1068, 1134
FauNDI	CATATG	1 cut(s)	865
FblI	GTMKAC	1 cut(s)	640
Fnu4HI	GCNGC	8 cut(s)	14, 108, 423, 576, 666, 749, 1140, 1176
FokI	GGATG	4 cut(s)	107, 163, 748, 1109
Fsp4HI	GCNGC	8 cut(s)	14, 108, 423, 576, 666, 749, 1140, 1176
FspBI	CTAG	1 cut(s)	1166
GlaI	GCGC	1 cut(s)	564
GluI	GCNGC	8 cut(s)	14, 108, 423, 576, 666, 749, 1140, 1176
GsuI	CTGGAG	2 cut(s)	45, 526
HaeIII	GGCC	1 cut(s)	899
HapII	CCGG	3 cut(s)	234, 509, 788
HhaI	GCGC	1 cut(s)	565
Hin1II	CATG	4 cut(s)	344, 452, 1072, 1138
Hin6I	GCGC	1 cut(s)	563
HinP1I	GCGC	1 cut(s)	563
HincII	GTYRAC	2 cut(s)	403, 721
HindII	GTYRAC	2 cut(s)	403, 721
HinfI	GANTC	5 cut(s)	512, 739, 826, 1072, 1117
HpaII	CCGG	3 cut(s)	234, 509, 788
HphI	GGTGA	4 cut(s)	59, 503, 835, 1048
Hpy166II	GTNNAC	5 cut(s)	220, 403, 470, 641, 721
Hpy188III	TCNNGA	7 cut(s)	30, 326, 543, 871, 1055, 1069, 1121
Hpy8I	GTNNAC	5 cut(s)	220, 403, 470, 641, 721
Hpy99I	CGWCG	2 cut(s)	10, 275
HpyAV	CCTTC	2 cut(s)	713, 919
HpyCH4III	ACNGT	3 cut(s)	10, 217, 809
HpyF10VI	GCNNNNNNNGC	6 cut(s)	428, 584, 593, 662, 671, 1175
HpyF3I	CTNAG	3 cut(s)	71, 439, 773
Hsp92II	CATG	4 cut(s)	344, 452, 1072, 1138
HspAI	GCGC	1 cut(s)	563
Kzo9I	GATC	5 cut(s)	97, 102, 240, 331, 708
LguI	GCTCTTC	1 cut(s)	1119
Lsp1109I	GCAGC	8 cut(s)	25, 94, 409, 562, 677, 735, 1126, 1162
LweI	GCATC	2 cut(s)	376, 550
MaeI	CTAG	1 cut(s)	1166
MaeIII	GTNAC	3 cut(s)	491, 767, 1114
MalI	GATC	5 cut(s)	99, 104, 242, 333, 710
MboI	GATC	5 cut(s)	97, 102, 240, 331, 708
MboII	GAAGA	7 cut(s)	124, 127, 322, 507, 558, 808, 1136
MfeI	CAATTG	1 cut(s)	970
MluCI	AATT	8 cut(s)	76, 254, 321, 370, 570, 657, 893, 970
MlyI	GAGTC	3 cut(s)	748, 835, 1111
MroXI	GAANNNNTTC	1 cut(s)	535
MseI	TTAA	1 cut(s)	1196
MspA1I	CMGCKG	1 cut(s)	748
MspI	CCGG	3 cut(s)	234, 509, 788
MunI	CAATTG	1 cut(s)	970
MwoI	GCNNNNNNNGC	6 cut(s)	428, 584, 593, 662, 671, 1175
NdeI	CATATG	1 cut(s)	865
NdeII	GATC	5 cut(s)	97, 102, 240, 331, 708
NheI	GCTAGC	1 cut(s)	1165
NlaIII	CATG	4 cut(s)	344, 452, 1072, 1138
NlaIV	GGNNCC	1 cut(s)	992
NmuCI	GTSAC	2 cut(s)	491, 1114
NspI	RCATGY	1 cut(s)	452
NspV	TTCGAA	1 cut(s)	1146
PagI	TCATGA	1 cut(s)	1068
PciI	ACATGT	1 cut(s)	448
PciSI	GCTCTTC	1 cut(s)	1119
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PdmI	GAANNNNTTC	1 cut(s)	535
PfeI	GAWTC	2 cut(s)	512, 1072
PkrI	GCNGC	8 cut(s)	15, 109, 424, 577, 667, 750, 1141, 1177
PleI	GAGTC	3 cut(s)	747, 834, 1111
PpsI	GAGTC	3 cut(s)	747, 834, 1111
PscI	ACATGT	1 cut(s)	448
PspEI	GGTNACC	1 cut(s)	767
PspN4I	GGNNCC	1 cut(s)	992
PspPI	GGNCC	1 cut(s)	352
PsrI	GAACNNNNNNTAC	2 cut(s)	774, 806
PstI	CTGCAG	1 cut(s)	667
RsaI	GTAC	6 cut(s)	119, 221, 471, 889, 941, 963
RsaNI	GTAC	6 cut(s)	118, 220, 470, 888, 940, 962
SapI	GCTCTTC	1 cut(s)	1119
SaqAI	TTAA	1 cut(s)	1196
SatI	GCNGC	8 cut(s)	14, 108, 423, 576, 666, 749, 1140, 1176
Sau3AI	GATC	5 cut(s)	97, 102, 240, 331, 708
Sau96I	GGNCC	1 cut(s)	352
SchI	GAGTC	3 cut(s)	748, 835, 1111
SfaNI	GCATC	2 cut(s)	376, 550
SfcI	CTRYAG	1 cut(s)	663
SfuI	TTCGAA	1 cut(s)	1146
SinI	GGWCC	1 cut(s)	352
SmlI	CTYRAG	1 cut(s)	901
SmoI	CTYRAG	1 cut(s)	901
Sse9I	AATT	8 cut(s)	76, 254, 321, 370, 570, 657, 893, 970
SsiI	CCGC	2 cut(s)	500, 746
SspMI	CTAG	1 cut(s)	1166
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	3 cut(s)	10, 217, 809
TaqI	TCGA	5 cut(s)	18, 96, 261, 558, 1146
TaqII	GACCGA	2 cut(s)	264, 388
TasI	AATT	8 cut(s)	76, 254, 321, 370, 570, 657, 893, 970
TatI	WGTACW	4 cut(s)	117, 219, 939, 961
TfiI	GAWTC	2 cut(s)	512, 1072
Tru1I	TTAA	1 cut(s)	1196
Tru9I	TTAA	1 cut(s)	1196
TscAI	CASTG	2 cut(s)	383, 955
TseFI	GTSAC	2 cut(s)	491, 1114
TseI	GCWGC	8 cut(s)	13, 107, 422, 575, 665, 748, 1139, 1175
Tsp45I	GTSAC	2 cut(s)	491, 1114
TspDTI	ATGAA	5 cut(s)	28, 247, 669, 848, 1017
TspGWI	ACGGA	1 cut(s)	1182
TspRI	CASTG	2 cut(s)	383, 955
VpaK11BI	GGWCC	1 cut(s)	352
XapI	RAATTY	3 cut(s)	76, 254, 321
XceI	RCATGY	1 cut(s)	452
XmiI	GTMKAC	1 cut(s)	640
XmnI	GAANNNNTTC	1 cut(s)	535
XspI	CTAG	1 cut(s)	1166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.