Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001459.1

Orthogroup ID

OG0017651

Physical Location & Seq

Genomic Coordinates Reverse (-)

76768 .. 78066

Gene Structure 1299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001459.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

atggctacggtgcagctggaagtaatatccagagagctcatcaaaccctcctctcaaactccacatcacctaagaaactacgacctctcctacttcgatcagctctctcctcgtaagtacatcccgcttgttcttttctataacccttgcaataccacttttgagacatccattctcctcaaaaaatctttatctgaaaccctagccttttactacccatttgccggaaaggtcaaagatcaagagttcatcgactgcaacgacgagggaattttgttcttagaagcaaaggtcaaactcaagttgtctgaaattcttgagaatccgaaacatgaaattttggaccttttatttgcagacaacttgcagtggaatgatacgaatttgagtactttacttgctgtacaagtcagctactttgattgtgggggaatggcattaagtgtgtgcatgtcacacaaaattggcgatgcagcaaccatggtcaatttcatcaatgactgggccgccaaggcttcaaactcaggtaaacaagtttcccctttgctctatacaccctcgatttttccaaggggtgacttaccacttatgccgcagccggaatattccatcaagaaagaaaattgtgcctccagaaggtttgtattcgatgcccaaaaaattgcggccctcaaagccattgtagctgacaaagtgcaaaaggctacaaaggtagaggttgtgagtgctctactatttaagtgtgcaatttctgccgccaatgcaagttcatcaggtactacaagaccaatcctttttctccaaaatgttaaccttcgtaccaggatgattcctccgctaccagaaaactatgtgggtaacatcagttgggtatttccagtaccaaaaagggaggacagtttgcattgcttggtgggtcaaatgaaagaggccttgtcagatttctgcaacacatatgttaagaatgtaaggggtacagaattggccttgagcattagcaaaaccatggagaagatgcgggctatgttcaaaagcagtaagcaatgtgtgcaatacaattgtagtagctggtgcaggttcccagtatacgaagcagattttgggtggggaaagcctgtgtgggtgagtattggggcttgtcttgacaagaatgttataattctgatggatagtaaaagtggggatgggatcgaagcttttgtgactctggaagagcaagacatggctgcttttgagtgtgatgaggagttactagcatttgctgctctaaatccaactccattaacaagtcaagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0005984 GO:0005985 GO:0008150 GO:0008152 GO:0009311 GO:0009987 GO:0016740 GO:0016746 GO:0044237 GO:0044238 GO:0044262 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

432

Amino Acids

48.34

Weight (kDa)

6.05

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017651)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24660
malus_domestica	MD14G1155800.v1.1
pyrus_communis	pycom14g12950
rosa_chinensis	RchiOBHm_Chr4g0431761
rosa_laevigata	RLG00000006892
rosa_multiflora	Rmu_sc0001459.1_g000022
rosa_roxburghii	Rroxscaffold_5G00373160
rosa_rugosa	Rorug04G0252200
rosa_samantha	Rh4AG308600 Rh4BG316400
rosa_wichuraiana	Rw4G026770 Rw4G026840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1157
Acc36I	ACCTGC	1 cut(s)	1065
AccI	GTMKAC	1 cut(s)	1086
AciI	CCGC	7 cut(s)	125, 507, 593, 665, 756, 836, 1018
AclWI	GGATC	1 cut(s)	1196
AcsI	RAATTY	4 cut(s)	270, 312, 336, 382
AfaI	GTAC	7 cut(s)	119, 391, 405, 778, 820, 882, 976
AfiI	CCNNNNNNNGG	2 cut(s)	224, 636
AgsI	TTSAA	2 cut(s)	519, 1030
AjnI	CCWGG	1 cut(s)	821
AjuI	GAANNNNNNNTTGG	2 cut(s)	1083, 1115
AluBI	AGCT	7 cut(s)	16, 37, 103, 414, 686, 1068, 1196
AluI	AGCT	7 cut(s)	16, 37, 103, 414, 686, 1068, 1196
Alw21I	GWGCWC	2 cut(s)	39, 730
Alw26I	GTCTC	1 cut(s)	158
AlwI	GGATC	1 cut(s)	1196
AoxI	GGCC	4 cut(s)	504, 666, 930, 984
ApeKI	GCWGC	5 cut(s)	13, 473, 595, 1226, 1262
ApoI	RAATTY	4 cut(s)	270, 312, 336, 382
ArsI	GACNNNNNNTTYG	2 cut(s)	335, 367
AspS9I	GGNCC	3 cut(s)	343, 504, 667
AsuHPI	GGTGA	3 cut(s)	59, 587, 1135
AvaII	GGWCC	1 cut(s)	343
BaeI	ACNNNNGTAYC	2 cut(s)	802, 835
BanII	GRGCYC	1 cut(s)	39
Bbv12I	GWGCWC	2 cut(s)	39, 730
BbvI	GCAGC	5 cut(s)	25, 485, 607, 1213, 1249
BccI	CCATC	3 cut(s)	617, 1159, 1178
BciT130I	CCWGG	1 cut(s)	823
BcoDI	GTCTC	1 cut(s)	158
BfaI	CTAG	2 cut(s)	203, 1253
BfuAI	ACCTGC	1 cut(s)	1065
BglI	GCCNNNNNGGC	1 cut(s)	512
BisI	GCNGC	9 cut(s)	14, 474, 507, 593, 596, 666, 756, 1227, 1263
BlsI	GCNGC	9 cut(s)	15, 475, 508, 594, 597, 667, 757, 1228, 1264
BmcAI	AGTACT	1 cut(s)	391
Bme1390I	CCNGG	1 cut(s)	823
Bme18I	GGWCC	1 cut(s)	343
BmgT120I	GGNCC	3 cut(s)	343, 504, 667
BmiI	GGNNCC	1 cut(s)	1079
BmrFI	CCNGG	1 cut(s)	823
BmrI	ACTGGG	2 cut(s)	511, 1076
BmsI	GCATC	3 cut(s)	460, 640, 1005
BmuI	ACTGGG	2 cut(s)	511, 1076
BpmI	CTGGAG	1 cut(s)	616
BpuEI	CTTGAG	3 cut(s)	284, 338, 1009
BsaJI	CCNNGG	4 cut(s)	480, 510, 569, 1005
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bsc4I	CCNNNNNNNGG	2 cut(s)	224, 636
Bse1I	ACTGG	3 cut(s)	506, 878, 1082
Bse3DI	GCAATG	2 cut(s)	904, 1049
BseBI	CCWGG	1 cut(s)	823
BseDI	CCNNGG	4 cut(s)	480, 510, 569, 1005
BseGI	GGATG	4 cut(s)	120, 167, 831, 1189
BseLI	CCNNNNNNNGG	2 cut(s)	224, 636
BseMI	GCAATG	2 cut(s)	904, 1049
BseMII	CTCAG	1 cut(s)	537
BseNI	ACTGG	3 cut(s)	506, 878, 1082
BseRI	GAGGAG	4 cut(s)	40, 99, 167, 1259
BseXI	GCAGC	5 cut(s)	25, 485, 607, 1213, 1249
BsgI	GTGCAG	2 cut(s)	32, 1093
BshFI	GGCC	4 cut(s)	506, 668, 932, 986
BsiHKAI	GWGCWC	2 cut(s)	39, 730
BsiSI	CCGG	2 cut(s)	225, 599
BslI	CCNNNNNNNGG	2 cut(s)	224, 636
BsmAI	GTCTC	1 cut(s)	158
BsnI	GGCC	4 cut(s)	506, 668, 932, 986
Bsp1286I	GDGCHC	2 cut(s)	39, 730
Bsp1407I	TGTACA	1 cut(s)	403
Bsp143I	GATC	3 cut(s)	97, 238, 1188
Bsp19I	CCATGG	2 cut(s)	480, 1005
BspACI	CCGC	7 cut(s)	125, 507, 593, 665, 756, 836, 1018
BspANI	GGCC	4 cut(s)	506, 668, 932, 986
BspCNI	CTCAG	1 cut(s)	536
BspLI	GGNNCC	1 cut(s)	1079
BspMI	ACCTGC	1 cut(s)	1065
BspPI	GGATC	1 cut(s)	1196
BspQI	GCTCTTC	1 cut(s)	1206
BsrDI	GCAATG	2 cut(s)	904, 1049
BsrGI	TGTACA	1 cut(s)	403
BsrI	ACTGG	3 cut(s)	506, 878, 1082
BssECI	CCNNGG	4 cut(s)	480, 510, 569, 1005
BssMI	GATC	3 cut(s)	97, 238, 1188
BssNAI	GTATAC	1 cut(s)	1087
BssT1I	CCWWGG	4 cut(s)	480, 510, 569, 1005
Bst1107I	GTATAC	1 cut(s)	1087
Bst2UI	CCWGG	1 cut(s)	823
Bst4CI	ACNGT	2 cut(s)	10, 899
Bst6I	CTCTTC	1 cut(s)	1206
BstAPI	GCANNNNNTGC	3 cut(s)	752, 1048, 1262
BstAUI	TGTACA	1 cut(s)	403
BstC8I	GCNNGC	1 cut(s)	1020
BstDEI	CTNAG	3 cut(s)	71, 280, 523
BstDSI	CCRYGG	2 cut(s)	480, 1005
BstENI	CCTNNNNNAGG	1 cut(s)	634
BstF5I	GGATG	4 cut(s)	120, 167, 831, 1189
BstKTI	GATC	3 cut(s)	100, 241, 1191
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	3 cut(s)	97, 238, 1188
BstMWI	GCNNNNNNNGC	7 cut(s)	512, 674, 683, 752, 761, 1048, 1262
BstNI	CCWGG	1 cut(s)	823
BstNSI	RCATGY	1 cut(s)	454
BstSCI	CCNGG	1 cut(s)	821
BstV1I	GCAGC	5 cut(s)	25, 485, 607, 1213, 1249
BstZ17I	GTATAC	1 cut(s)	1087
BsuRI	GGCC	4 cut(s)	506, 668, 932, 986
BtgI	CCRYGG	2 cut(s)	480, 1005
BtgZI	GCGATG	1 cut(s)	483
BtsCI	GGATG	4 cut(s)	120, 167, 831, 1189
BtsI	GCAGTG	1 cut(s)	374
BtsIMutI	CAGTG	1 cut(s)	374
BveI	ACCTGC	1 cut(s)	1065
Cac8I	GCNNGC	1 cut(s)	1020
Cfr13I	GGNCC	3 cut(s)	343, 504, 667
Csp6I	GTAC	7 cut(s)	118, 390, 404, 777, 819, 881, 975
CviAII	CATG	5 cut(s)	332, 451, 481, 1006, 1222
CviQI	GTAC	7 cut(s)	118, 390, 404, 777, 819, 881, 975
DdeI	CTNAG	3 cut(s)	71, 280, 523
DpnI	GATC	3 cut(s)	99, 240, 1190
DpnII	GATC	3 cut(s)	97, 238, 1188
Eam1104I	CTCTTC	1 cut(s)	1206
EarI	CTCTTC	1 cut(s)	1206
Ecl136II	GAGCTC	1 cut(s)	37
Eco130I	CCWWGG	4 cut(s)	480, 510, 569, 1005
Eco147I	AGGCCT	1 cut(s)	932
Eco24I	GRGCYC	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	343
Eco53kI	GAGCTC	1 cut(s)	37
EcoICRI	GAGCTC	1 cut(s)	37
EcoNI	CCTNNNNNAGG	1 cut(s)	634
EcoRII	CCWGG	1 cut(s)	821
EcoT14I	CCWWGG	4 cut(s)	480, 510, 569, 1005
EcoT38I	GRGCYC	1 cut(s)	39
ErhI	CCWWGG	4 cut(s)	480, 510, 569, 1005
FaeI	CATG	5 cut(s)	335, 454, 484, 1009, 1225
FatI	CATG	5 cut(s)	331, 450, 480, 1005, 1221
FauI	CCCGC	2 cut(s)	132, 1011
FauNDI	CATATG	1 cut(s)	955
FblI	GTMKAC	1 cut(s)	1086
Fnu4HI	GCNGC	9 cut(s)	14, 474, 507, 593, 596, 666, 756, 1227, 1263
FokI	GGATG	4 cut(s)	107, 154, 838, 1196
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	9 cut(s)	14, 474, 507, 593, 596, 666, 756, 1227, 1263
FspBI	CTAG	2 cut(s)	203, 1253
GluI	GCNGC	9 cut(s)	14, 474, 507, 593, 596, 666, 756, 1227, 1263
GsuI	CTGGAG	1 cut(s)	616
HaeIII	GGCC	4 cut(s)	506, 668, 932, 986
HapII	CCGG	2 cut(s)	225, 599
Hin1II	CATG	5 cut(s)	335, 454, 484, 1009, 1225
HincII	GTYRAC	1 cut(s)	811
HindII	GTYRAC	1 cut(s)	811
HindIII	AAGCTT	1 cut(s)	1194
HinfI	GANTC	3 cut(s)	322, 829, 1204
HpaI	GTTAAC	1 cut(s)	811
HpaII	CCGG	2 cut(s)	225, 599
HphI	GGTGA	3 cut(s)	59, 587, 1135
Hpy166II	GTNNAC	3 cut(s)	530, 811, 1087
Hpy188I	TCNGA	5 cut(s)	196, 310, 327, 940, 1164
Hpy188III	TCNNGA	7 cut(s)	30, 242, 317, 613, 633, 1142, 1208
Hpy8I	GTNNAC	3 cut(s)	530, 811, 1087
Hpy99I	CGWCG	1 cut(s)	266
HpyAV	CCTTC	2 cut(s)	630, 824
HpyCH4III	ACNGT	2 cut(s)	10, 899
HpyF10VI	GCNNNNNNNGC	7 cut(s)	512, 674, 683, 752, 761, 1048, 1262
HpyF3I	CTNAG	3 cut(s)	71, 280, 523
Hsp92II	CATG	5 cut(s)	335, 454, 484, 1009, 1225
KspAI	GTTAAC	1 cut(s)	811
Kzo9I	GATC	3 cut(s)	97, 238, 1188
LguI	GCTCTTC	1 cut(s)	1206
Lsp1109I	GCAGC	5 cut(s)	25, 485, 607, 1213, 1249
LweI	GCATC	3 cut(s)	460, 640, 1005
MaeI	CTAG	2 cut(s)	203, 1253
MaeIII	GTNAC	5 cut(s)	453, 575, 857, 1201, 1248
MalI	GATC	3 cut(s)	99, 240, 1190
MboI	GATC	3 cut(s)	97, 238, 1188
MboII	GAAGA	2 cut(s)	1024, 1223
MfeI	CAATTG	1 cut(s)	1057
MhlI	GDGCHC	2 cut(s)	39, 730
MlyI	GAGTC	1 cut(s)	1198
MmeI	TCCRAC	1 cut(s)	1298
MseI	TTAA	5 cut(s)	440, 738, 810, 960, 1283
MspA1I	CMGCKG	1 cut(s)	16
MspI	CCGG	2 cut(s)	225, 599
MspR9I	CCNGG	1 cut(s)	823
MunI	CAATTG	1 cut(s)	1057
MvaI	CCWGG	1 cut(s)	823
MwoI	GCNNNNNNNGC	7 cut(s)	512, 674, 683, 752, 761, 1048, 1262
NcoI	CCATGG	2 cut(s)	480, 1005
NdeI	CATATG	1 cut(s)	955
NdeII	GATC	3 cut(s)	97, 238, 1188
NlaIII	CATG	5 cut(s)	335, 454, 484, 1009, 1225
NlaIV	GGNNCC	1 cut(s)	1079
NmuCI	GTSAC	3 cut(s)	453, 575, 1201
NspI	RCATGY	1 cut(s)	454
PceI	AGGCCT	1 cut(s)	932
PciSI	GCTCTTC	1 cut(s)	1206
PcsI	WCGNNNNNNNCGW	1 cut(s)	258
PfeI	GAWTC	2 cut(s)	322, 829
PkrI	GCNGC	9 cut(s)	15, 475, 508, 594, 597, 667, 757, 1228, 1264
PleI	GAGTC	1 cut(s)	1198
PpsI	GAGTC	1 cut(s)	1198
PsiI	TTATAA	1 cut(s)	1157
Psp124BI	GAGCTC	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	821
PspGI	CCWGG	1 cut(s)	821
PspN4I	GGNNCC	1 cut(s)	1079
PspPI	GGNCC	3 cut(s)	343, 504, 667
PvuII	CAGCTG	1 cut(s)	16
RsaI	GTAC	7 cut(s)	119, 391, 405, 778, 820, 882, 976
RsaNI	GTAC	7 cut(s)	118, 390, 404, 777, 819, 881, 975
SacI	GAGCTC	1 cut(s)	39
SapI	GCTCTTC	1 cut(s)	1206
SaqAI	TTAA	5 cut(s)	440, 738, 810, 960, 1283
SatI	GCNGC	9 cut(s)	14, 474, 507, 593, 596, 666, 756, 1227, 1263
Sau3AI	GATC	3 cut(s)	97, 238, 1188
Sau96I	GGNCC	3 cut(s)	343, 504, 667
ScaI	AGTACT	1 cut(s)	391
SchI	GAGTC	1 cut(s)	1198
ScrFI	CCNGG	1 cut(s)	823
SduI	GDGCHC	2 cut(s)	39, 730
SfaNI	GCATC	3 cut(s)	460, 640, 1005
SinI	GGWCC	1 cut(s)	343
SmlI	CTYRAG	3 cut(s)	299, 317, 988
SmoI	CTYRAG	3 cut(s)	299, 317, 988
SseBI	AGGCCT	1 cut(s)	932
SsiI	CCGC	7 cut(s)	125, 507, 593, 665, 756, 836, 1018
SspI	AATATT	1 cut(s)	605
SspMI	CTAG	2 cut(s)	203, 1253
SstI	GAGCTC	1 cut(s)	39
StuI	AGGCCT	1 cut(s)	932
StyD4I	CCNGG	1 cut(s)	821
StyI	CCWWGG	4 cut(s)	480, 510, 569, 1005
TaaI	ACNGT	2 cut(s)	10, 899
TaqI	TCGA	5 cut(s)	96, 252, 560, 648, 1191
TatI	WGTACW	3 cut(s)	117, 389, 403
TauI	GCSGC	4 cut(s)	509, 595, 668, 758
TfiI	GAWTC	2 cut(s)	322, 829
Tru1I	TTAA	5 cut(s)	440, 738, 810, 960, 1283
Tru9I	TTAA	5 cut(s)	440, 738, 810, 960, 1283
TscAI	CASTG	1 cut(s)	374
TseFI	GTSAC	3 cut(s)	453, 575, 1201
TseI	GCWGC	5 cut(s)	13, 473, 595, 1226, 1262
Tsp45I	GTSAC	3 cut(s)	453, 575, 1201
TspDTI	ATGAA	5 cut(s)	238, 348, 481, 759, 938
TspRI	CASTG	1 cut(s)	374
VpaK11BI	GGWCC	1 cut(s)	343
XagI	CCTNNNNNAGG	1 cut(s)	634
XapI	RAATTY	4 cut(s)	270, 312, 336, 382
XceI	RCATGY	1 cut(s)	454
XmiI	GTMKAC	1 cut(s)	1086
XspI	CTAG	2 cut(s)	203, 1253
ZrmI	AGTACT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.