RchiOBHm_Chr4g0431761

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0017651
Physical Location & Seq
Forward (+)
55926666 .. 55928171
1506 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40040

Sequence Viewer

Length: 1458 bp
ATGATGAAGAAGTCTCACATGACAATTGGACTCGATGAAAAGCCAACCAACCAGGTGGAACTCATTTCGAACCATCCTTTCATTTTAACAAATTGCGCCGCCTCTGACTTTAAATCAGCGACTCCATCCACCACAGAAGCTCGATCGTCCTCGGTGATCATGGCTACGGTGCAGCTCGAAGTAATATCCAGAGAGCTCATCAAACCCTCCTCTCAAACTCCACATCACCTAAGAAACTACAACCTCTCCTACTTCGATCAGCTCTCTCCTCGTAAGTACATCCCGCTTGTTCTTTTCTATAACCCTTGCAATACCACTTTTGAGACATCCATTCTTCTCAAAAAATCTTTATCTGAAACCCTAGCCTTTTACTACCCATTTGCCGGAAAGGTCAAAGATCAAGAGTTCATCGATTGCAACGACGAGGGAATTTTGTTCTTAGAAGCAAAGGTCAAACTGAAGTTGTCTGAAATTCTTGAGAATCCGAAACATGAAATTTTGGACCTTTTATTTGCAGACAACTTGCAGTGGAATGATACAAATCTGAGTACTTTACTTGCTGTACAAGTCAGCTACTTTGATTGTGGGGGAATGGCATTAAGTGTGTGCATGTCACACAAAATTGGCGATGCAGCAACCATGGTCAATTTCGTCAATGACTGGGCCGCCAAGGCTTCAAACTCAGGTAAACAAGTTTCCCCTTTGCTCTATACACCCTCGATTTTTCCAAGGGGTGACTTAACACTTATGCCGCAGCCGGAATATTCCATCAAGAAAGAAACTTGTTCCTCCAGAAGGTTTGTATTCGATGCCCAAAAAATTGCGGCCCTCAAAGCCATTGTAGCTGACAAAGTGCAGAAGGCTACAAAGGTAGAGGTTGTGAGTGCTCTACTATATAAGTGTGCAATTTCTGCCGCCAATGCAAGTTCATCAGGTACTACAAGACCAATTCTTTTTCTCCAAAATGTTAACCTTCGTACCAGGATGATTCCTCCGCTACCAGAAAACTATGTGGGTAACATCAGTTGGGTATTTCCAGTACCAAAAAGGGAGGACAGTTTGCATTGCTTGGTGGGTCAAATGAAAGAGGCCTTGTCAGATTTCTGCAACACATATGTTAAGAATGTAAGGGGTACAGAATTGGCCTTGAGCATCAGCAAAACCATGGAGAAGATGCGGGCTATGTTCAAAAGCAGTAAGCAATGTGTGCAATACAATTGTAGTAGCTGGTGCAGGTTCCCAGTATACGAAGCAGATTTTGGGTGGGGAAAGCCTGTGTGGGTGAGTATTGGGGCTTGTCTTGACAAGAATGTTATAATTCTGATGGATAGTAAAAGTGGGGATGGGATCGAAGCTTTTGTGACTCTGGAAGAGCAAGACATGGCTGCTTTTGAGTGTGATGAAGAGTTACTAGCATTTGCTGCTCTAAATCCAACTCCATTAACAAGTCAAGTTTGA

Protein Analysis

485

Amino Acids

54.1

Weight (kDa)

6.42

Isoelectric Point (pI)

38.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 58 - 470 3.1e-85 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017651)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24660
malus_domestica MD14G1155800.v1.1
pyrus_communis pycom14g12950
rosa_chinensis RchiOBHm_Chr4g0431761
rosa_laevigata RLG00000006892
rosa_multiflora Rmu_sc0001459.1_g000022
rosa_roxburghii Rroxscaffold_5G00373160
rosa_rugosa Rorug04G0252200
rosa_samantha Rh4AG308600 Rh4BG316400
rosa_wichuraiana Rw4G026770 Rw4G026840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1316
Acc36I ACCTGC 1 cut(s) 1224
AccI GTMKAC 1 cut(s) 1245
AciI CCGC 8 cut(s) 99, 284, 666, 752, 824, 915, 995, 1177
AclWI GGATC 1 cut(s) 1355
AcsI RAATTY 3 cut(s) 429, 471, 495
AcuI CTGAAG 1 cut(s) 479
AfaI GTAC 7 cut(s) 278, 550, 564, 937, 979, 1041, 1135
AfiI CCNNNNNNNGG 2 cut(s) 383, 795
AgsI TTSAA 2 cut(s) 678, 1189
AjnI CCWGG 2 cut(s) 51, 980
AjuI GAANNNNNNNTTGG 2 cut(s) 1242, 1274
AluBI AGCT 8 cut(s) 140, 175, 196, 262, 573, 845, 1227, 1355
AluI AGCT 8 cut(s) 140, 175, 196, 262, 573, 845, 1227, 1355
Alw21I GWGCWC 2 cut(s) 198, 889
Alw26I GTCTC 2 cut(s) 18, 317
AlwI GGATC 1 cut(s) 1355
AoxI GGCC 4 cut(s) 663, 825, 1089, 1143
ApeKI GCWGC 5 cut(s) 172, 632, 754, 1385, 1421
ApoI RAATTY 3 cut(s) 429, 471, 495
ArsI GACNNNNNNTTYG 2 cut(s) 494, 526
AspLEI GCGC 1 cut(s) 98
AspS9I GGNCC 3 cut(s) 502, 663, 826
AsuHPI GGTGA 4 cut(s) 166, 218, 746, 1294
AsuII TTCGAA 1 cut(s) 68
AvaII GGWCC 1 cut(s) 502
BaeI ACNNNNGTAYC 2 cut(s) 961, 994
BanII GRGCYC 1 cut(s) 198
Bbv12I GWGCWC 2 cut(s) 198, 889
BbvI GCAGC 5 cut(s) 184, 644, 766, 1372, 1408
BccI CCATC 5 cut(s) 81, 133, 776, 1318, 1337
BciT130I CCWGG 2 cut(s) 53, 982
BclI TGATCA 1 cut(s) 156
BcoDI GTCTC 2 cut(s) 18, 317
BfaI CTAG 2 cut(s) 362, 1412
BfuAI ACCTGC 1 cut(s) 1224
BglI GCCNNNNNGGC 1 cut(s) 671
BmcAI AGTACT 1 cut(s) 550
Bme1390I CCNGG 2 cut(s) 53, 982
Bme18I GGWCC 1 cut(s) 502
BmgT120I GGNCC 3 cut(s) 502, 663, 826
BmiI GGNNCC 1 cut(s) 1238
BmrFI CCNGG 2 cut(s) 53, 982
BmrI ACTGGG 2 cut(s) 670, 1235
BmsI GCATC 4 cut(s) 619, 799, 1161, 1164
BmuI ACTGGG 2 cut(s) 670, 1235
BpmI CTGGAG 1 cut(s) 775
Bpu14I TTCGAA 1 cut(s) 68
BpuEI CTTGAG 2 cut(s) 497, 1168
Bsa29I ATCGAT 1 cut(s) 411
BsaBI GATNNNNATC 1 cut(s) 540
BsaJI CCNNGG 5 cut(s) 150, 639, 669, 728, 1164
BsaXI ACNNNNNCTCC 2 cut(s) 230, 260
Bsc4I CCNNNNNNNGG 2 cut(s) 383, 795
Bse1I ACTGG 3 cut(s) 665, 1037, 1241
Bse3DI GCAATG 2 cut(s) 1063, 1208
Bse8I GATNNNNATC 1 cut(s) 540
BseBI CCWGG 2 cut(s) 53, 982
BseCI ATCGAT 1 cut(s) 411
BseDI CCNNGG 5 cut(s) 150, 639, 669, 728, 1164
BseGI GGATG 6 cut(s) 73, 125, 279, 326, 990, 1348
BseJI GATNNNNATC 1 cut(s) 540
BseLI CCNNNNNNNGG 2 cut(s) 383, 795
BseMI GCAATG 2 cut(s) 1063, 1208
BseMII CTCAG 2 cut(s) 536, 696
BseNI ACTGG 3 cut(s) 665, 1037, 1241
BseRI GAGGAG 2 cut(s) 199, 258
BseXI GCAGC 5 cut(s) 184, 644, 766, 1372, 1408
BsgI GTGCAG 3 cut(s) 191, 875, 1252
Bsh1285I CGRYCG 1 cut(s) 146
BshFI GGCC 4 cut(s) 665, 827, 1091, 1145
BshVI ATCGAT 1 cut(s) 411
BsiEI CGRYCG 1 cut(s) 146
BsiHKAI GWGCWC 2 cut(s) 198, 889
BsiSI CCGG 2 cut(s) 384, 758
BslI CCNNNNNNNGG 2 cut(s) 383, 795
BsmAI GTCTC 2 cut(s) 18, 317
BsnI GGCC 4 cut(s) 665, 827, 1091, 1145
Bsp119I TTCGAA 1 cut(s) 68
Bsp1286I GDGCHC 2 cut(s) 198, 889
Bsp1407I TGTACA 1 cut(s) 562
Bsp143I GATC 5 cut(s) 143, 156, 256, 397, 1347
Bsp19I CCATGG 2 cut(s) 639, 1164
BspACI CCGC 8 cut(s) 99, 284, 666, 752, 824, 915, 995, 1177
BspANI GGCC 4 cut(s) 665, 827, 1091, 1145
BspCNI CTCAG 2 cut(s) 537, 695
BspDI ATCGAT 1 cut(s) 411
BspLI GGNNCC 1 cut(s) 1238
BspMI ACCTGC 1 cut(s) 1224
BspPI GGATC 1 cut(s) 1355
BspQI GCTCTTC 1 cut(s) 1365
BspT104I TTCGAA 1 cut(s) 68
BsrDI GCAATG 2 cut(s) 1063, 1208
BsrGI TGTACA 1 cut(s) 562
BsrI ACTGG 3 cut(s) 665, 1037, 1241
BssECI CCNNGG 5 cut(s) 150, 639, 669, 728, 1164
BssMI GATC 5 cut(s) 143, 156, 256, 397, 1347
BssNAI GTATAC 1 cut(s) 1246
BssT1I CCWWGG 4 cut(s) 639, 669, 728, 1164
Bst1107I GTATAC 1 cut(s) 1246
Bst2UI CCWGG 2 cut(s) 53, 982
Bst4CI ACNGT 2 cut(s) 169, 1058
Bst6I CTCTTC 2 cut(s) 1365, 1398
BstAPI GCANNNNNTGC 3 cut(s) 911, 1207, 1421
BstAUI TGTACA 1 cut(s) 562
BstBI TTCGAA 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 1179
BstDEI CTNAG 4 cut(s) 230, 439, 545, 682
BstDSI CCRYGG 2 cut(s) 639, 1164
BstENI CCTNNNNNAGG 1 cut(s) 793
BstF5I GGATG 6 cut(s) 73, 125, 279, 326, 990, 1348
BstHHI GCGC 1 cut(s) 98
BstKTI GATC 5 cut(s) 146, 159, 259, 400, 1350
BstMAI GTCTC 2 cut(s) 18, 317
BstMBI GATC 5 cut(s) 143, 156, 256, 397, 1347
BstMCI CGRYCG 1 cut(s) 146
BstMWI GCNNNNNNNGC 7 cut(s) 671, 833, 842, 911, 920, 1207, 1421
BstNI CCWGG 2 cut(s) 53, 982
BstNSI RCATGY 1 cut(s) 613
BstSCI CCNGG 2 cut(s) 51, 980
BstV1I GCAGC 5 cut(s) 184, 644, 766, 1372, 1408
BstXI CCANNNNNNTGG 1 cut(s) 55
BstZ17I GTATAC 1 cut(s) 1246
Bsu15I ATCGAT 1 cut(s) 411
BsuRI GGCC 4 cut(s) 665, 827, 1091, 1145
BsuTUI ATCGAT 1 cut(s) 411
BtgI CCRYGG 2 cut(s) 639, 1164
BtgZI GCGATG 1 cut(s) 642
BtsCI GGATG 6 cut(s) 73, 125, 279, 326, 990, 1348
BtsI GCAGTG 1 cut(s) 533
BtsIMutI CAGTG 1 cut(s) 533
BveI ACCTGC 1 cut(s) 1224
Cac8I GCNNGC 1 cut(s) 1179
CfoI GCGC 1 cut(s) 98
Cfr13I GGNCC 3 cut(s) 502, 663, 826
ClaI ATCGAT 1 cut(s) 411
CsiI ACCWGGT 1 cut(s) 51
Csp6I GTAC 7 cut(s) 277, 549, 563, 936, 978, 1040, 1134
CviAII CATG 7 cut(s) 19, 160, 491, 610, 640, 1165, 1381
CviQI GTAC 7 cut(s) 277, 549, 563, 936, 978, 1040, 1134
DdeI CTNAG 4 cut(s) 230, 439, 545, 682
DpnI GATC 5 cut(s) 145, 158, 258, 399, 1349
DpnII GATC 5 cut(s) 143, 156, 256, 397, 1347
DraI TTTAAA 1 cut(s) 112
Eam1104I CTCTTC 2 cut(s) 1365, 1398
EarI CTCTTC 2 cut(s) 1365, 1398
Ecl136II GAGCTC 1 cut(s) 196
Eco130I CCWWGG 4 cut(s) 639, 669, 728, 1164
Eco147I AGGCCT 1 cut(s) 1091
Eco24I GRGCYC 1 cut(s) 198
Eco47I GGWCC 1 cut(s) 502
Eco53kI GAGCTC 1 cut(s) 196
Eco57I CTGAAG 1 cut(s) 479
EcoICRI GAGCTC 1 cut(s) 196
EcoNI CCTNNNNNAGG 1 cut(s) 793
EcoRII CCWGG 2 cut(s) 51, 980
EcoT14I CCWWGG 4 cut(s) 639, 669, 728, 1164
EcoT38I GRGCYC 1 cut(s) 198
ErhI CCWWGG 4 cut(s) 639, 669, 728, 1164
FaeI CATG 7 cut(s) 22, 163, 494, 613, 643, 1168, 1384
FatI CATG 7 cut(s) 18, 159, 490, 609, 639, 1164, 1380
FauI CCCGC 2 cut(s) 291, 1170
FauNDI CATATG 1 cut(s) 1114
FbaI TGATCA 1 cut(s) 156
FblI GTMKAC 1 cut(s) 1245
FokI GGATG 6 cut(s) 60, 112, 266, 313, 997, 1355
FriOI GRGCYC 1 cut(s) 198
FspBI CTAG 2 cut(s) 362, 1412
GlaI GCGC 1 cut(s) 97
GsuI CTGGAG 1 cut(s) 775
HaeIII GGCC 4 cut(s) 665, 827, 1091, 1145
HapII CCGG 2 cut(s) 384, 758
HhaI GCGC 1 cut(s) 98
Hin1II CATG 7 cut(s) 22, 163, 494, 613, 643, 1168, 1384
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HincII GTYRAC 1 cut(s) 970
HindII GTYRAC 1 cut(s) 970
HindIII AAGCTT 1 cut(s) 1353
HinfI GANTC 5 cut(s) 30, 121, 481, 988, 1363
HpaI GTTAAC 1 cut(s) 970
HpaII CCGG 2 cut(s) 384, 758
HphI GGTGA 4 cut(s) 166, 218, 746, 1294
Hpy166II GTNNAC 3 cut(s) 689, 970, 1246
Hpy188I TCNGA 7 cut(s) 106, 355, 469, 486, 546, 1099, 1323
Hpy188III TCNNGA 7 cut(s) 189, 401, 476, 772, 792, 1301, 1367
Hpy8I GTNNAC 3 cut(s) 689, 970, 1246
Hpy99I CGWCG 1 cut(s) 425
HpyAV CCTTC 3 cut(s) 789, 853, 983
HpyCH4III ACNGT 2 cut(s) 169, 1058
HpyF10VI GCNNNNNNNGC 7 cut(s) 671, 833, 842, 911, 920, 1207, 1421
HpyF3I CTNAG 4 cut(s) 230, 439, 545, 682
Hsp92II CATG 7 cut(s) 22, 163, 494, 613, 643, 1168, 1384
HspAI GCGC 1 cut(s) 96
Ksp22I TGATCA 1 cut(s) 156
KspAI GTTAAC 1 cut(s) 970
Kzo9I GATC 5 cut(s) 143, 156, 256, 397, 1347
LguI GCTCTTC 1 cut(s) 1365
Lsp1109I GCAGC 5 cut(s) 184, 644, 766, 1372, 1408
LweI GCATC 4 cut(s) 619, 799, 1161, 1164
MabI ACCWGGT 1 cut(s) 51
MaeI CTAG 2 cut(s) 362, 1412
MaeIII GTNAC 5 cut(s) 612, 734, 1016, 1360, 1407
MalI GATC 5 cut(s) 145, 158, 258, 399, 1349
MboI GATC 5 cut(s) 143, 156, 256, 397, 1347
MboII GAAGA 5 cut(s) 19, 326, 1183, 1382, 1415
MfeI CAATTG 2 cut(s) 24, 1216
MhlI GDGCHC 2 cut(s) 198, 889
MlyI GAGTC 3 cut(s) 24, 115, 1357
MmeI TCCRAC 1 cut(s) 1457
MseI TTAA 7 cut(s) 86, 111, 599, 740, 969, 1119, 1442
MspI CCGG 2 cut(s) 384, 758
MspR9I CCNGG 2 cut(s) 53, 982
MunI CAATTG 2 cut(s) 24, 1216
MvaI CCWGG 2 cut(s) 53, 982
MwoI GCNNNNNNNGC 7 cut(s) 671, 833, 842, 911, 920, 1207, 1421
NcoI CCATGG 2 cut(s) 639, 1164
NdeI CATATG 1 cut(s) 1114
NdeII GATC 5 cut(s) 143, 156, 256, 397, 1347
NlaIII CATG 7 cut(s) 22, 163, 494, 613, 643, 1168, 1384
NlaIV GGNNCC 1 cut(s) 1238
NmuCI GTSAC 3 cut(s) 612, 734, 1360
NspI RCATGY 1 cut(s) 613
NspV TTCGAA 1 cut(s) 68
PceI AGGCCT 1 cut(s) 1091
PciSI GCTCTTC 1 cut(s) 1365
PcsI WCGNNNNNNNCGW 1 cut(s) 417
PfeI GAWTC 2 cut(s) 481, 988
Ple19I CGATCG 1 cut(s) 146
PleI GAGTC 3 cut(s) 24, 115, 1357
PpsI GAGTC 3 cut(s) 24, 115, 1357
PsiI TTATAA 1 cut(s) 1316
Psp124BI GAGCTC 1 cut(s) 198
Psp6I CCWGG 2 cut(s) 51, 980
PspGI CCWGG 2 cut(s) 51, 980
PspN4I GGNNCC 1 cut(s) 1238
PspPI GGNCC 3 cut(s) 502, 663, 826
PvuI CGATCG 1 cut(s) 146
RsaI GTAC 7 cut(s) 278, 550, 564, 937, 979, 1041, 1135
RsaNI GTAC 7 cut(s) 277, 549, 563, 936, 978, 1040, 1134
SacI GAGCTC 1 cut(s) 198
SapI GCTCTTC 1 cut(s) 1365
SaqAI TTAA 7 cut(s) 86, 111, 599, 740, 969, 1119, 1442
Sau3AI GATC 5 cut(s) 143, 156, 256, 397, 1347
Sau96I GGNCC 3 cut(s) 502, 663, 826
ScaI AGTACT 1 cut(s) 550
SchI GAGTC 3 cut(s) 24, 115, 1357
ScrFI CCNGG 2 cut(s) 53, 982
SduI GDGCHC 2 cut(s) 198, 889
SexAI ACCWGGT 1 cut(s) 51
SfaNI GCATC 4 cut(s) 619, 799, 1161, 1164
SfuI TTCGAA 1 cut(s) 68
SinI GGWCC 1 cut(s) 502
SmlI CTYRAG 2 cut(s) 476, 1147
SmoI CTYRAG 2 cut(s) 476, 1147
SseBI AGGCCT 1 cut(s) 1091
SsiI CCGC 8 cut(s) 99, 284, 666, 752, 824, 915, 995, 1177
SspI AATATT 1 cut(s) 764
SspMI CTAG 2 cut(s) 362, 1412
SstI GAGCTC 1 cut(s) 198
StuI AGGCCT 1 cut(s) 1091
StyD4I CCNGG 2 cut(s) 51, 980
StyI CCWWGG 4 cut(s) 639, 669, 728, 1164
TaaI ACNGT 2 cut(s) 169, 1058
TaqI TCGA 9 cut(s) 33, 68, 142, 177, 255, 411, 719, 807, 1350
TatI WGTACW 3 cut(s) 276, 548, 562
TauI GCSGC 5 cut(s) 101, 668, 754, 827, 917
TfiI GAWTC 2 cut(s) 481, 988
Tru1I TTAA 7 cut(s) 86, 111, 599, 740, 969, 1119, 1442
Tru9I TTAA 7 cut(s) 86, 111, 599, 740, 969, 1119, 1442
TscAI CASTG 1 cut(s) 533
TseFI GTSAC 3 cut(s) 612, 734, 1360
TseI GCWGC 5 cut(s) 172, 632, 754, 1385, 1421
Tsp45I GTSAC 3 cut(s) 612, 734, 1360
TspDTI ATGAA 8 cut(s) 20, 51, 70, 397, 507, 918, 1097, 1416
TspRI CASTG 1 cut(s) 533
VpaK11BI GGWCC 1 cut(s) 502
XagI CCTNNNNNAGG 1 cut(s) 793
XapI RAATTY 3 cut(s) 429, 471, 495
XceI RCATGY 1 cut(s) 613
XmiI GTMKAC 1 cut(s) 1245
XspI CTAG 2 cut(s) 362, 1412
ZrmI AGTACT 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.